2DF
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | doub | 1.50Å | 1.48Å | |
| P | O2P | sing | 1.62Å | 1.48Å | |
| P | O3P | sing | 1.62Å | 10.64Å | |
| P | O5' | sing | 1.62Å | 1.63Å | |
| O2P | HOP2 | sing | 0.98Å | 0.95Å | |
| O3P | HOP3 | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.42Å | |
| C5' | C4' | sing | 1.52Å | 1.53Å | |
| C5' | H5'1 | sing | 1.09Å | 1.09Å | |
| C5' | H5'2 | sing | 1.09Å | 1.09Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C4' | C3' | sing | 1.52Å | 1.54Å | |
| C4' | H4' | sing | 1.10Å | 1.08Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C1' | N1 | sing | 1.44Å | 1.46Å | |
| C1' | C2' | sing | 1.52Å | 1.54Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.38Å | 1.34Å | |
| N1 | H1 | sing | 1.02Å | 1.01Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C2 | H2 | sing | 1.10Å | 1.08Å | |
| C3' | C2' | sing | 1.51Å | 1.54Å | |
| C3' | O3' | sing | 1.41Å | 1.42Å | |
| C3' | H3' | sing | 1.10Å | 1.10Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.10Å | 1.09Å | |
| O3' | H3T | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 119.3° | 115.3° |
| O1P | P | O3P | 117.8° | 115.0° |
| O1P | P | O5' | 108.0° | 115.0° |
| O2P | P | O3P | 84.3° | 103.3° |
| O2P | P | O5' | 106.9° | 103.7° |
| P | O2P | HOP2 | 119.3° | 118.9° |
| O3P | P | O5' | 118.7° | 102.9° |
| P | O3P | HOP3 | 117.8° | 119.0° |
| P | O5' | C5' | 123.3° | 118.4° |
| O5' | C5' | C4' | 111.8° | 108.8° |
| O5' | C5' | H5'1 | 110.6° | 109.0° |
| O5' | C5' | H5'2 | 108.2° | 109.0° |
| C4' | C5' | H5'1 | 110.1° | 110.3° |
| C4' | C5' | H5'2 | 108.3° | 110.3° |
| C5' | C4' | O4' | 109.5° | 109.5° |
| C5' | C4' | C3' | 112.0° | 113.4° |
| C5' | C4' | H4' | 108.3° | 108.6° |
| H5'1 | C5' | H5'2 | 107.6° | 109.3° |
| O4' | C4' | C3' | 107.1° | 106.1° |
| O4' | C4' | H4' | 109.2° | 107.9° |
| C4' | O4' | C1' | 108.2° | 108.7° |
| C3' | C4' | H4' | 110.7° | 111.2° |
| C4' | C3' | C2' | 102.4° | 101.4° |
| C4' | C3' | O3' | 111.6° | 112.4° |
| C4' | C3' | H3' | 110.9° | 111.7° |
| O4' | C1' | N1 | 110.5° | 108.4° |
| O4' | C1' | C2' | 102.1° | 106.9° |
| O4' | C1' | H1' | 109.4° | 109.6° |
| N1 | C1' | C2' | 110.6° | 112.2° |
| N1 | C1' | H1' | 109.7° | 107.3° |
| C1' | N1 | C2 | 124.2° | 123.6° |
| C1' | N1 | H1 | 117.0° | 118.2° |
| C2' | C1' | H1' | 114.3° | 112.3° |
| C1' | C2' | C3' | 104.3° | 102.2° |
| C1' | C2' | H2'1 | 112.7° | 114.3° |
| C1' | C2' | H2'2 | 110.6° | 110.4° |
| C2 | N1 | H1 | 118.8° | 118.3° |
| N1 | C2 | O2 | 123.7° | 127.7° |
| N1 | C2 | H2 | 117.0° | 110.7° |
| O2 | C2 | H2 | 119.2° | 121.6° |
| C2' | C3' | O3' | 111.6° | 111.4° |
| C2' | C3' | H3' | 110.6° | 110.6° |
| C3' | C2' | H2'1 | 105.1° | 113.0° |
| C3' | C2' | H2'2 | 115.2° | 109.7° |
| O3' | C3' | H3' | 109.6° | 109.2° |
| C3' | O3' | H3T | 111.6° | 107.2° |
| H2'1 | C2' | H2'2 | 108.8° | 107.2° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 118.8° | 126.3° |
| O1P | P | O2P | O5' | 122.9° | 126.6° |
| O1P | P | O3P | O5' | 133.5° | 125.8° |
| O1P | P | O2P | HOP2 | 180.0° | 48.8° |
| O1P | P | O3P | HOP3 | 180.0° | 48.0° |
| O1P | P | O5' | C5' | 23.1° | 180.0° |
| O2P | P | O3P | O5' | 106.2° | 107.7° |
| O2P | P | O3P | HOP3 | 59.8° | 78.5° |
| O2P | P | O5' | C5' | 152.7° | 53.2° |
| O3P | P | O2P | HOP2 | 61.2° | 77.4° |
| O3P | P | O5' | C5' | 114.5° | 54.2° |
| O5' | P | O2P | HOP2 | 57.2° | 175.5° |
| O5' | P | O3P | HOP3 | 46.4° | 173.8° |
| P | O5' | C5' | C4' | 79.4° | 180.0° |
| P | O5' | C5' | H5'1 | 43.8° | 59.7° |
| P | O5' | C5' | H5'2 | 161.4° | 59.6° |
| O5' | C5' | C4' | H5'1 | 123.4° | 119.5° |
| O5' | C5' | C4' | H5'2 | 119.1° | 119.6° |
| O5' | C5' | H5'1 | H5'2 | 118.0° | 119.1° |
| O5' | C5' | C4' | O4' | 176.2° | 61.2° |
| O5' | C5' | C4' | C3' | 65.2° | 179.5° |
| O5' | C5' | C4' | H4' | 57.2° | 56.4° |
| C4' | C5' | H5'1 | H5'2 | 117.8° | 121.5° |
| C5' | C4' | O4' | C3' | 121.7° | 122.7° |
| C5' | C4' | O4' | H4' | 118.5° | 118.0° |
| C5' | C4' | C3' | H4' | 121.0° | 122.7° |
| C5' | C4' | O4' | C1' | 150.8° | 139.6° |
| C5' | C4' | C3' | C2' | 124.8° | 154.4° |
| C5' | C4' | C3' | O3' | 115.7° | 86.6° |
| C5' | C4' | C3' | H3' | 6.8° | 36.5° |
| H5'1 | C5' | C4' | O4' | 52.7° | 58.3° |
| H5'1 | C5' | C4' | C3' | 171.4° | 60.0° |
| H5'1 | C5' | C4' | H4' | 66.3° | 175.9° |
| H5'2 | C5' | C4' | O4' | 64.7° | 179.2° |
| H5'2 | C5' | C4' | C3' | 54.0° | 60.9° |
| H5'2 | C5' | C4' | H4' | 176.3° | 63.2° |
| O4' | C4' | C3' | H4' | 119.0° | 117.1° |
| C4' | O4' | C1' | N1 | 158.1° | 113.6° |
| C4' | O4' | C1' | C2' | 40.4° | 7.5° |
| C4' | O4' | C1' | H1' | 81.0° | 129.5° |
| O4' | C4' | C3' | C2' | 4.7° | 34.1° |
| O4' | C4' | C3' | O3' | 124.3° | 153.2° |
| O4' | C4' | C3' | H3' | 113.3° | 83.7° |
| C3' | C4' | O4' | C1' | 29.1° | 16.9° |
| C4' | C3' | C2' | C1' | 18.6° | 37.2° |
| C4' | C3' | C2' | O3' | 119.5° | 119.8° |
| C4' | C3' | C2' | H3' | 118.2° | 118.6° |
| C4' | C3' | O3' | H3' | 123.2° | 124.5° |
| C4' | C3' | C2' | H2'1 | 100.3° | 160.6° |
| C4' | C3' | C2' | H2'2 | 140.0° | 79.9° |
| C4' | C3' | O3' | H3T | 180.0° | 49.5° |
| H4' | C4' | O4' | C1' | 90.8° | 102.4° |
| H4' | C4' | C3' | C2' | 114.2° | 83.0° |
| H4' | C4' | C3' | O3' | 5.3° | 36.1° |
| H4' | C4' | C3' | H3' | 127.8° | 159.2° |
| O4' | C1' | N1 | C2' | 112.3° | 117.8° |
| O4' | C1' | N1 | H1' | 120.6° | 118.3° |
| O4' | C1' | C2' | H1' | 118.0° | 120.3° |
| O4' | C1' | N1 | C2 | 144.2° | 148.3° |
| O4' | C1' | N1 | H1 | 36.7° | 31.7° |
| O4' | C1' | C2' | C3' | 35.8° | 28.6° |
| O4' | C1' | C2' | H2'1 | 77.7° | 151.1° |
| O4' | C1' | C2' | H2'2 | 160.3° | 88.0° |
| N1 | C1' | C2' | H1' | 124.5° | 121.0° |
| C1' | N1 | C2 | H1 | 179.1° | 179.9° |
| C1' | N1 | C2 | O2 | 0.4° | 0.1° |
| C1' | N1 | C2 | H2 | 179.9° | 180.0° |
| N1 | C1' | C2' | C3' | 153.4° | 90.0° |
| N1 | C1' | C2' | H2'1 | 39.9° | 32.5° |
| N1 | C1' | C2' | H2'2 | 82.2° | 153.4° |
| C2' | C1' | N1 | C2 | 103.5° | 93.9° |
| C2' | C1' | N1 | H1 | 75.6° | 86.2° |
| C1' | C2' | C3' | H2'1 | 118.9° | 123.4° |
| C1' | C2' | C3' | H2'2 | 121.5° | 117.1° |
| C1' | C2' | C3' | O3' | 100.9° | 157.0° |
| C1' | C2' | C3' | H3' | 136.8° | 81.4° |
| C1' | C2' | H2'1 | H2'2 | 123.1° | 122.6° |
| H1' | C1' | N1 | C2 | 23.6° | 30.0° |
| H1' | C1' | N1 | H1 | 157.3° | 150.0° |
| H1' | C1' | C2' | C3' | 82.1° | 148.9° |
| H1' | C1' | C2' | H2'1 | 164.3° | 88.6° |
| H1' | C1' | C2' | H2'2 | 42.3° | 32.3° |
| N1 | C2 | O2 | H2 | 179.5° | 179.9° |
| H1 | N1 | C2 | O2 | 179.5° | 180.0° |
| H1 | N1 | C2 | H2 | 1.0° | 0.0° |
| C2' | C3' | O3' | H3' | 122.9° | 122.5° |
| C3' | C2' | H2'1 | H2'2 | 123.9° | 121.0° |
| C2' | C3' | O3' | H3T | 66.1° | 63.5° |
| O3' | C3' | C2' | H2'1 | 140.3° | 79.7° |
| O3' | C3' | C2' | H2'2 | 20.6° | 39.9° |
| H3' | C3' | C2' | H2'1 | 17.9° | 42.0° |
| H3' | C3' | C2' | H2'2 | 101.8° | 161.5° |
| H3' | C3' | O3' | H3T | 56.8° | 174.0° |
