Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2DE

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1O1sing1.43Å1.43Å
C1C2sing1.51Å1.51Å
O1PAsing1.61Å1.61Å
C2C3doub1.31Å1.33Å
C3C5sing1.51Å1.51Å
C5C6sing1.53Å1.52Å
C6C7sing1.51Å1.51Å
C7C8doub1.31Å1.34Å
C8C9sing1.51Å1.51Å
C8C10sing1.51Å1.50Å
C9C11sing1.53Å1.52Å
PAO1Adoub1.48Å1.51Å
PAO2Asing1.61Å1.52Å
PAO3Asing1.61Å1.61Å
PBO1Bdoub1.48Å1.51Å
PBO2Bsing1.61Å1.51Å
PBO3Asing1.61Å1.61Å
PBO3Bsing1.61Å1.51Å
C11C12sing1.51Å1.51Å
C12C13doub1.31Å1.34Å
C13C14sing1.51Å1.50Å
C13C15sing1.51Å1.50Å
C1H1sing1.09Å1.10Å
C1H1Asing1.09Å1.10Å
C2H2sing1.08Å1.08Å
C3H3sing1.08Å1.08Å
C5H5sing1.09Å1.10Å
C5H5Asing1.09Å1.10Å
C6H6sing1.09Å1.10Å
C6H6Asing1.09Å1.10Å
C7H7sing1.08Å1.08Å
C9H9sing1.09Å1.10Å
C9H9Asing1.09Å1.10Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
C10H10Bsing1.09Å1.10Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
C12H12sing1.08Å1.08Å
C14H14sing1.09Å1.10Å
C14H14Asing1.09Å1.10Å
C14H14Bsing1.09Å1.10Å
C15H15sing1.09Å1.10Å
C15H15Asing1.09Å1.10Å
C15H15Bsing1.09Å1.10Å
O2AHO2Asing0.97Å0.95Å
O2BHO2Bsing0.97Å0.95Å
O3BHO3Bsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C1C2111.6°109.4°
C1O1PA119.7°123.0°
O1C1H1108.8°109.4°
O1C1H1A108.7°109.5°
C1C2C3120.8°120.0°
C2C1H1108.8°109.5°
C2C1H1A108.8°109.5°
C1C2H2119.6°120.0°
O1PAO1A108.8°109.4°
O1PAO2A107.7°109.5°
O1PAO3A102.0°109.5°
C2C3C5121.0°120.0°
C3C2H2119.6°120.0°
C2C3H3119.5°120.0°
C3C5C6111.2°109.5°
C5C3H3119.5°120.0°
C3C5H5108.9°109.5°
C3C5H5A108.9°109.5°
C5C6C7109.5°109.5°
C6C5H5108.9°109.4°
C6C5H5A108.9°109.4°
C5C6H6109.4°109.5°
C5C6H6A109.4°109.4°
C6C7C8121.6°120.0°
C7C6H6109.5°109.5°
C7C6H6A109.5°109.5°
C6C7H7119.2°120.0°
C7C8C9119.8°120.1°
C7C8C10120.4°120.0°
C8C7H7119.2°120.0°
C9C8C10119.8°120.0°
C8C9C11109.6°109.5°
C8C9H9109.4°109.5°
C8C9H9A109.4°109.5°
C8C10H10109.5°109.4°
C8C10H10A109.5°109.5°
C8C10H10B109.5°109.4°
C9C11C12108.1°109.4°
C11C9H9109.4°109.5°
C11C9H9A109.4°109.4°
C9C11H11109.9°109.5°
C9C11H11A109.9°109.4°
O1APAO2A119.9°109.5°
O1APAO3A107.6°109.5°
O2APAO3A109.3°109.5°
PAO2AHO2A109.5°114.0°
PAO3APB121.4°134.0°
O1BPBO2B114.9°109.5°
O1BPBO3A105.3°109.4°
O1BPBO3B114.0°109.5°
O2BPBO3A102.8°109.5°
O2BPBO3B114.4°109.5°
PBO2BHO2B109.5°113.9°
O3APBO3B103.6°109.5°
PBO3BHO3B109.5°114.0°
C11C12C13120.9°120.0°
C12C11H11109.9°109.5°
C12C11H11A109.9°109.4°
C11C12H12119.6°120.1°
C12C13C14119.5°120.0°
C12C13C15120.0°120.0°
C13C12H12119.6°120.0°
C14C13C15120.5°120.0°
C13C14H14109.5°109.4°
C13C14H14A109.5°109.5°
C13C14H14B109.5°109.4°
C13C15H15109.5°109.4°
C13C15H15A109.5°109.5°
C13C15H15B109.5°109.4°
H1C1H1A110.2°109.5°
H5C5H5A110.0°109.5°
H6C6H6A109.5°109.4°
H9C9H9A109.5°109.5°
H10C10H10A109.5°109.5°
H10C10H10B109.4°109.5°
H10AC10H10B109.5°109.5°
H11C11H11A109.0°109.6°
H14C14H14A109.5°109.5°
H14C14H14B109.4°109.6°
H14AC14H14B109.5°109.5°
H15C15H15A109.5°109.5°
H15C15H15B109.5°109.5°
H15AC15H15B109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C1C2H1120.0°119.9°
O1C1C2H1A120.0°120.1°
O1C1C2C374.6°135.0°
C1O1PAO1A160.0°55.1°
C1O1PAO2A68.6°64.9°
C1O1PAO3A46.5°175.0°
O1C1H1H1A119.1°120.0°
O1C1C2H2105.4°45.1°
C2C1O1PA129.1°180.0°
C1C2C3H2180.0°179.9°
C1C2C3C5179.5°180.0°
C2C1H1H1A119.2°120.0°
C1C2C3H30.6°0.1°
O1PAO1AO2A124.5°120.0°
O1PAO1AO3A109.8°120.0°
O1PAO2AO3A110.0°120.0°
O1PAO3APB104.4°160.0°
PAO1C1H19.1°60.1°
PAO1C1H1A110.9°59.9°
O1PAO2AHO2A107.5°60.1°
C2C3C5H3180.0°179.9°
C2C3C5C659.7°125.0°
C3C2C1H1165.4°15.1°
C3C2C1H1A45.4°104.9°
C2C3C5H560.3°115.1°
C2C3C5H5A179.7°5.0°
C3C5C6H5120.0°120.0°
C3C5C6H5A120.0°120.0°
C3C5C6C7148.7°180.0°
C5C3C2H20.5°0.1°
C3C5H5H5A119.3°120.0°
C3C5C6H628.7°60.0°
C3C5C6H6A91.2°60.0°
C5C6C7H6120.0°120.0°
C5C6C7H6A120.0°120.0°
C5C6C7C8135.1°121.5°
C6C5C3H3120.3°55.0°
C6C5H5H5A119.3°120.0°
C5C6H6H6A119.9°120.0°
C5C6C7H744.9°58.5°
C6C7C8H7180.0°180.0°
C6C7C8C9179.7°174.1°
C6C7C8C100.3°5.9°
C7C6C5H591.2°60.0°
C7C6C5H5A28.7°60.0°
C7C6H6H6A120.0°120.0°
C7C8C9C10180.0°179.9°
C7C8C9C11129.2°94.9°
C8C7C6H6104.9°1.5°
C8C7C6H6A15.1°118.4°
C7C8C9H99.2°145.1°
C7C8C9H9A110.8°25.0°
C7C8C10H10180.0°84.8°
C7C8C10H10A60.0°155.2°
C7C8C10H10B60.0°35.2°
C8C9C11H9120.0°120.0°
C8C9C11H9A120.0°120.0°
C8C9C11C1286.3°180.0°
C9C8C7H70.3°5.8°
C8C9H9H9A119.9°120.0°
C9C8C10H100.0°95.3°
C9C8C10H10A120.0°24.8°
C9C8C10H10B120.0°144.8°
C8C9C11H11153.7°60.0°
C8C9C11H11A33.8°60.1°
C10C8C9C1150.8°85.0°
C10C8C7H7179.7°174.1°
C10C8C9H9170.8°35.0°
C10C8C9H9A69.2°155.1°
C8C10H10H10A120.0°120.0°
C8C10H10H10B120.0°119.9°
C8C10H10AH10B120.0°120.0°
C9C11C12H11120.0°120.0°
C9C11C12H11A120.0°119.9°
C9C11C12C13159.2°125.1°
C11C9H9H9A120.0°119.9°
C9C11H11H11A120.5°120.0°
C9C11C12H1220.8°55.0°
O1APAO2AO3A124.9°120.0°
O1APAO3APB141.2°40.1°
O1APAO2AHO2A127.5°180.0°
O2APAO3APB9.4°80.0°
PAO3APBO1B12.2°45.1°
PAO3APBO2B108.5°165.0°
PAO3APBO3B132.1°74.9°
O3APAO2AHO2A2.6°60.0°
O1BPBO2BO3A113.8°119.9°
O1BPBO2BO3B134.6°120.0°
O1BPBO3AO3B120.0°120.0°
O1BPBO2BHO2B0.0°60.1°
O1BPBO3BHO3B0.0°180.0°
O2BPBO3AO3B119.4°120.1°
O2BPBO3BHO3B135.1°60.0°
O3APBO2BHO2B113.8°180.0°
O3APBO3BHO3B113.8°60.0°
O3BPBO2BHO2B134.7°60.0°
C11C12C13H12180.0°179.9°
C11C12C13C14180.0°0.0°
C11C12C13C150.1°180.0°
C12C11C9H933.7°60.0°
C12C11C9H9A153.8°60.0°
C12C11H11H11A120.6°120.0°
C12C13C14C15179.9°180.0°
C13C12C11H1139.2°5.1°
C13C12C11H11A80.8°115.0°
C12C13C14H14180.0°60.0°
C12C13C14H14A60.0°180.0°
C12C13C14H14B60.0°60.0°
C12C13C15H15180.0°89.9°
C12C13C15H15A60.0°150.0°
C12C13C15H15B60.0°30.0°
C14C13C12H120.1°180.0°
C13C14H14H14A120.0°120.0°
C13C14H14H14B120.0°119.9°
C13C14H14AH14B120.0°119.9°
C14C13C15H150.1°90.0°
C14C13C15H15A119.9°30.0°
C14C13C15H15B120.2°150.0°
C15C13C12H12179.9°0.1°
C15C13C14H140.1°120.0°
C15C13C14H14A120.2°0.0°
C15C13C14H14B119.9°120.0°
C13C15H15H15A120.0°120.0°
C13C15H15H15B120.0°119.9°
C13C15H15AH15B120.0°120.0°
H1C1C2H214.6°165.0°
H1AC1C2H2134.6°75.0°
H2C2C3H3179.4°180.0°
H3C3C5H5119.7°65.0°
H3C3C5H5A0.2°175.0°
H5C5C6H6148.8°180.0°
H5C5C6H6A28.8°60.0°
H5AC5C6H691.3°60.1°
H5AC5C6H6A148.8°180.0°
H6C6C7H775.0°178.5°
H6AC6C7H7164.9°61.5°
H9C9C11H1186.3°179.9°
H9C9C11H11A153.8°59.9°
H9AC9C11H1133.8°60.0°
H9AC9C11H11A86.2°179.9°
H10C10H10AH10B120.0°120.0°
H11C11C12H12140.8°175.0°
H11AC11C12H1299.2°64.9°
H14C14H14AH14B119.9°120.1°
H15C15H15AH15B120.0°120.1°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon