2AU
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | doub | 1.50Å | 1.48Å | |
| P | OP1 | sing | 1.62Å | 1.48Å | |
| P | O5' | sing | 1.62Å | 1.59Å | |
| OP1 | H1P1 | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.43Å | |
| C5' | C4' | sing | 1.52Å | 1.51Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.46Å | |
| C4' | C3' | sing | 1.52Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.52Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.52Å | 1.53Å | |
| C2' | N2' | sing | 1.45Å | 1.45Å | |
| C2' | H2' | sing | 1.10Å | 1.10Å | |
| C1' | N1 | sing | 1.44Å | 1.47Å | |
| C1' | H1' | sing | 1.10Å | 1.10Å | |
| N1 | C2 | sing | 1.42Å | 1.38Å | |
| N1 | C6 | sing | 1.39Å | 1.38Å | |
| C2 | O2 | doub | 1.23Å | 1.22Å | |
| C2 | N3 | sing | 1.40Å | 1.37Å | |
| N3 | C4 | sing | 1.39Å | 1.38Å | |
| N3 | H3 | sing | 1.02Å | 1.00Å | |
| C4 | O4 | doub | 1.23Å | 1.23Å | |
| C4 | C5 | sing | 1.48Å | 1.43Å | |
| C5 | C6 | doub | 1.34Å | 1.34Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.09Å | 1.08Å | |
| N2' | HA1 | sing | 1.00Å | 1.00Å | |
| N2' | H2'' | sing | 1.00Å | 1.00Å | |
| OP2 | P | sing | 1.62Å | 11.79Å | |
| OP2 | H2P1 | sing | 0.98Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP3 | P | OP1 | 119.4° | 115.3° |
| OP3 | P | O5' | 108.3° | 115.0° |
| OP3 | P | OP2 | 123.9° | 115.0° |
| OP1 | P | O5' | 108.4° | 103.7° |
| P | OP1 | H1P1 | 109.5° | 118.9° |
| OP1 | P | OP2 | 105.4° | 103.3° |
| P | O5' | C5' | 121.3° | 118.5° |
| O5' | P | OP2 | 85.6° | 102.9° |
| O5' | C5' | C4' | 110.1° | 108.7° |
| O5' | C5' | H5' | 109.1° | 109.2° |
| O5' | C5' | H5'' | 109.3° | 109.2° |
| C4' | C5' | H5' | 109.1° | 110.0° |
| C4' | C5' | H5'' | 109.2° | 110.0° |
| C5' | C4' | O4' | 108.6° | 108.1° |
| C5' | C4' | C3' | 115.1° | 113.3° |
| C5' | C4' | H4' | 105.0° | 109.3° |
| H5' | C5' | H5'' | 110.0° | 109.6° |
| O4' | C4' | C3' | 105.4° | 106.0° |
| O4' | C4' | H4' | 114.8° | 107.7° |
| C4' | O4' | C1' | 109.9° | 109.4° |
| C3' | C4' | H4' | 108.2° | 112.1° |
| C4' | C3' | O3' | 112.3° | 108.8° |
| C4' | C3' | C2' | 102.8° | 102.3° |
| C4' | C3' | H3' | 113.0° | 113.5° |
| O4' | C1' | C2' | 106.8° | 106.8° |
| O4' | C1' | N1 | 108.4° | 109.0° |
| O4' | C1' | H1' | 113.6° | 107.5° |
| O3' | C3' | C2' | 112.3° | 111.4° |
| O3' | C3' | H3' | 103.7° | 107.5° |
| C3' | O3' | HO3' | 109.5° | 106.4° |
| C2' | C3' | H3' | 113.0° | 113.4° |
| C3' | C2' | C1' | 101.0° | 102.2° |
| C3' | C2' | N2' | 110.9° | 114.1° |
| C3' | C2' | H2' | 113.9° | 108.8° |
| C1' | C2' | N2' | 109.3° | 113.1° |
| C1' | C2' | H2' | 115.4° | 109.8° |
| C2' | C1' | N1 | 114.0° | 112.9° |
| C2' | C1' | H1' | 107.9° | 112.8° |
| N2' | C2' | H2' | 106.3° | 108.6° |
| C2' | N2' | HA1 | 109.5° | 118.4° |
| C2' | N2' | H2'' | 109.5° | 118.5° |
| N1 | C1' | H1' | 106.3° | 107.7° |
| C1' | N1 | C2 | 117.9° | 121.3° |
| C1' | N1 | C6 | 121.2° | 118.6° |
| C2 | N1 | C6 | 120.9° | 120.1° |
| N1 | C2 | O2 | 123.0° | 123.7° |
| N1 | C2 | N3 | 115.0° | 115.1° |
| N1 | C6 | C5 | 122.4° | 124.1° |
| N1 | C6 | H6 | 118.8° | 115.5° |
| O2 | C2 | N3 | 122.0° | 121.1° |
| C2 | N3 | C4 | 127.1° | 126.8° |
| C2 | N3 | H3 | 116.5° | 116.6° |
| C4 | N3 | H3 | 116.4° | 116.6° |
| N3 | C4 | O4 | 119.4° | 124.5° |
| N3 | C4 | C5 | 114.6° | 114.6° |
| O4 | C4 | C5 | 126.0° | 120.9° |
| C4 | C5 | C6 | 120.0° | 119.2° |
| C4 | C5 | H5 | 120.0° | 118.8° |
| C6 | C5 | H5 | 120.0° | 121.9° |
| C5 | C6 | H6 | 118.8° | 120.4° |
| HA1 | N2' | H2'' | 109.5° | 121.7° |
| P | OP2 | H2P1 | 90.0° | 118.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | O5' | 124.5° | 126.6° |
| OP3 | P | OP1 | OP2 | 145.0° | 126.3° |
| OP3 | P | O5' | OP2 | 124.4° | 125.8° |
| OP3 | P | OP1 | H1P1 | 175.0° | 48.9° |
| OP3 | P | O5' | C5' | 110.2° | 180.0° |
| OP3 | P | OP2 | H2P1 | 90.0° | 48.0° |
| OP1 | P | O5' | OP2 | 104.7° | 107.4° |
| OP1 | P | O5' | C5' | 20.7° | 53.2° |
| OP1 | P | OP2 | H2P1 | 90.0° | 78.5° |
| O5' | P | OP1 | H1P1 | 50.5° | 175.4° |
| P | O5' | C5' | C4' | 142.7° | 180.0° |
| P | O5' | C5' | H5' | 22.9° | 59.9° |
| P | O5' | C5' | H5'' | 97.3° | 60.0° |
| O5' | P | OP2 | H2P1 | 90.0° | 173.8° |
| H1P1 | OP1 | P | OP2 | 40.0° | 77.4° |
| O5' | C5' | C4' | H5' | 119.7° | 119.5° |
| O5' | C5' | C4' | H5'' | 120.0° | 119.5° |
| O5' | C5' | H5' | H5'' | 119.8° | 119.6° |
| O5' | C5' | C4' | O4' | 77.8° | 62.4° |
| O5' | C5' | C4' | C3' | 40.0° | 179.5° |
| O5' | C5' | C4' | H4' | 158.9° | 54.6° |
| C5' | O5' | P | OP2 | 125.4° | 54.2° |
| C4' | C5' | H5' | H5'' | 119.8° | 121.2° |
| C5' | C4' | O4' | C3' | 123.8° | 121.8° |
| C5' | C4' | O4' | H4' | 117.2° | 118.0° |
| C5' | C4' | C3' | H4' | 117.1° | 124.4° |
| C5' | C4' | O4' | C1' | 115.6° | 107.5° |
| C5' | C4' | C3' | O3' | 147.9° | 155.2° |
| C5' | C4' | C3' | C2' | 91.1° | 86.8° |
| C5' | C4' | C3' | H3' | 31.0° | 35.6° |
| H5' | C5' | C4' | O4' | 41.9° | 57.2° |
| H5' | C5' | C4' | C3' | 159.7° | 60.0° |
| H5' | C5' | C4' | H4' | 81.3° | 174.1° |
| H5'' | C5' | C4' | O4' | 162.2° | 178.1° |
| H5'' | C5' | C4' | C3' | 80.0° | 60.9° |
| H5'' | C5' | C4' | H4' | 38.9° | 64.9° |
| O4' | C4' | C3' | H4' | 123.3° | 117.2° |
| O4' | C4' | C3' | O3' | 92.5° | 86.4° |
| O4' | C4' | C3' | C2' | 28.5° | 31.6° |
| O4' | C4' | C3' | H3' | 150.6° | 154.1° |
| C4' | O4' | C1' | C2' | 15.7° | 9.0° |
| C4' | O4' | C1' | N1 | 139.0° | 131.2° |
| C4' | O4' | C1' | H1' | 103.1° | 112.3° |
| C3' | C4' | O4' | C1' | 8.2° | 14.3° |
| C4' | C3' | O3' | C2' | 115.3° | 112.0° |
| C4' | C3' | O3' | H3' | 122.4° | 123.2° |
| C4' | C3' | C2' | H3' | 122.2° | 122.5° |
| C4' | C3' | O3' | HO3' | 127.1° | 169.5° |
| C4' | C3' | C2' | C1' | 36.5° | 35.8° |
| C4' | C3' | C2' | N2' | 152.3° | 158.3° |
| C4' | C3' | C2' | H2' | 87.8° | 80.3° |
| H4' | C4' | O4' | C1' | 127.2° | 134.5° |
| H4' | C4' | C3' | O3' | 30.8° | 30.8° |
| H4' | C4' | C3' | C2' | 151.8° | 148.8° |
| H4' | C4' | C3' | H3' | 86.1° | 88.7° |
| O4' | C1' | C2' | C3' | 32.8° | 28.4° |
| O4' | C1' | C2' | N1 | 119.7° | 119.7° |
| O4' | C1' | C2' | H1' | 122.5° | 117.9° |
| O4' | C1' | C2' | N2' | 149.7° | 151.5° |
| O4' | C1' | C2' | H2' | 90.5° | 86.9° |
| O4' | C1' | N1 | H1' | 122.5° | 116.4° |
| O4' | C1' | N1 | C2 | 147.5° | 146.4° |
| O4' | C1' | N1 | C6 | 32.5° | 33.6° |
| O3' | C3' | C2' | H3' | 116.9° | 121.4° |
| O3' | C3' | C2' | C1' | 84.4° | 80.3° |
| O3' | C3' | C2' | N2' | 31.4° | 42.2° |
| O3' | C3' | C2' | H2' | 151.2° | 163.6° |
| C2' | C3' | O3' | HO3' | 117.6° | 78.4° |
| C3' | C2' | C1' | N2' | 117.0° | 123.1° |
| C3' | C2' | C1' | H2' | 123.3° | 115.3° |
| C3' | C2' | N2' | H2' | 124.3° | 121.5° |
| C3' | C2' | C1' | N1 | 152.5° | 148.1° |
| C3' | C2' | C1' | H1' | 89.7° | 89.4° |
| C3' | C2' | N2' | HA1 | 34.2° | 162.4° |
| C3' | C2' | N2' | H2'' | 85.8° | 4.2° |
| H3' | C3' | O3' | HO3' | 4.7° | 46.3° |
| H3' | C3' | C2' | C1' | 158.7° | 158.3° |
| H3' | C3' | C2' | N2' | 85.5° | 79.2° |
| H3' | C3' | C2' | H2' | 34.3° | 42.2° |
| C1' | C2' | N2' | H2' | 125.1° | 122.2° |
| C2' | C1' | N1 | H1' | 118.8° | 125.2° |
| C2' | C1' | N1 | C2 | 93.7° | 95.2° |
| C2' | C1' | N1 | C6 | 86.2° | 84.8° |
| C1' | C2' | N2' | HA1 | 76.4° | 46.1° |
| C1' | C2' | N2' | H2'' | 163.7° | 120.5° |
| N2' | C2' | C1' | N1 | 90.5° | 88.8° |
| N2' | C2' | C1' | H1' | 27.3° | 33.7° |
| C2' | N2' | HA1 | H2'' | 120.0° | 166.1° |
| H2' | C2' | C1' | N1 | 29.2° | 32.8° |
| H2' | C2' | C1' | H1' | 147.0° | 155.2° |
| H2' | C2' | N2' | HA1 | 158.5° | 76.1° |
| H2' | C2' | N2' | H2'' | 38.5° | 117.3° |
| C1' | N1 | C2 | C6 | 180.0° | 180.0° |
| C1' | N1 | C2 | O2 | 0.1° | 0.0° |
| C1' | N1 | C2 | N3 | 180.0° | 180.0° |
| C1' | N1 | C6 | C5 | 180.0° | 179.9° |
| C1' | N1 | C6 | H6 | 0.0° | 0.0° |
| H1' | C1' | N1 | C2 | 25.0° | 30.1° |
| H1' | C1' | N1 | C6 | 155.0° | 150.0° |
| N1 | C2 | O2 | N3 | 179.9° | 180.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.0° |
| N1 | C2 | N3 | H3 | 179.9° | 180.0° |
| C2 | N1 | C6 | C5 | 0.1° | 0.0° |
| C2 | N1 | C6 | H6 | 179.9° | 180.0° |
| C6 | N1 | C2 | O2 | 180.0° | 180.0° |
| C6 | N1 | C2 | N3 | 0.0° | 0.0° |
| N1 | C6 | C5 | C4 | 0.1° | 0.1° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| N1 | C6 | C5 | H5 | 179.9° | 180.0° |
| O2 | C2 | N3 | C4 | 179.9° | 180.0° |
| O2 | C2 | N3 | H3 | 0.1° | 0.0° |
| C2 | N3 | C4 | H3 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 179.2° | 180.0° |
| C2 | N3 | C4 | C5 | 0.2° | 0.0° |
| N3 | C4 | O4 | C5 | 179.3° | 180.0° |
| N3 | C4 | C5 | C6 | 0.2° | 0.0° |
| N3 | C4 | C5 | H5 | 179.8° | 180.0° |
| H3 | N3 | C4 | O4 | 0.8° | 0.0° |
| H3 | N3 | C4 | C5 | 179.8° | 180.0° |
| O4 | C4 | C5 | C6 | 179.1° | 180.0° |
| O4 | C4 | C5 | H5 | 0.9° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 179.9° |
| C4 | C5 | C6 | H6 | 179.9° | 180.0° |
| H5 | C5 | C6 | H6 | 0.0° | 0.1° |
