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2AA

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C13N5sing1.47Å1.33Å
C13H131sing1.09Å1.10Å
C13H132sing1.09Å1.10Å
C13H133sing1.09Å1.10Å
N5C12sing1.47Å1.33Å
N5C11sing1.39Å1.36Å
C12H121sing1.09Å1.10Å
C12H122sing1.09Å1.10Å
C12H123sing1.09Å1.10Å
C11C10doub1.38Å1.40ÅAromatic
C11C6'sing1.41Å1.42ÅAromatic
C10C9'sing1.39Å1.40ÅAromatic
C10H10sing1.08Å1.08Å
C9'C8'doub1.36Å1.39ÅAromatic
C9'H9'sing1.08Å1.08Å
C8'C7'sing1.41Å1.40ÅAromatic
C8'H8'sing1.08Å1.08Å
C7'C6'doub1.42Å1.41ÅAromatic
C7'C2'sing1.41Å1.40ÅAromatic
C6'C5'sing1.40Å1.40ÅAromatic
C5'C4'doub1.36Å1.40ÅAromatic
C5'H5'sing1.08Å1.08Å
C4'C3'sing1.39Å1.40ÅAromatic
C4'H4'sing1.08Å1.08Å
C3'C2'doub1.36Å1.39ÅAromatic
C3'H3'sing1.08Å1.08Å
C2'S1sing1.76Å1.74Å
S1O3'doub1.42Å1.52Å
S1O4'doub1.42Å1.51Å
S1N4sing1.66Å1.64Å
N4C1'sing1.47Å1.46Å
N4HN4sing0.97Å1.00Å
C1'C9sing1.53Å1.52Å
C1'H1'1sing1.09Å1.10Å
C1'H1'2sing1.09Å1.10Å
C9O2'sing1.43Å1.41Å
C9H91sing1.09Å1.10Å
C9H92sing1.09Å1.10Å
O2'P2sing1.61Å1.59Å
P2O1'doub1.48Å1.50Å
P2O9sing1.61Å1.51Å
P2O8sing1.61Å1.61Å
O9HO9sing0.97Å0.95Å
O8P1sing1.61Å1.62Å
P1O7doub1.48Å1.49Å
P1O6sing1.61Å1.47Å
P1O5sing1.61Å1.59Å
O6HO6sing0.97Å0.95Å
O5C14sing1.43Å1.43Å
C14C8sing1.53Å1.52Å
C14H141sing1.09Å1.10Å
C14H142sing1.09Å1.10Å
C8O2sing1.44Å1.46Å
C8C7sing1.54Å1.53Å
C8H8sing1.09Å1.10Å
O2C5sing1.44Å1.46Å
C7O4sing1.43Å1.42Å
C7C6sing1.55Å1.51Å
C7H7sing1.09Å1.10Å
O4HO4sing0.97Å0.95Å
C6O3sing1.43Å1.43Å
C6C5sing1.55Å1.52Å
C6H6sing1.09Å1.10Å
O3HO3sing0.97Å0.95Å
C5N3sing1.46Å1.50Å
C5H5sing1.09Å1.10Å
N3C4sing1.36Å1.42ÅAromatic
N3C1sing1.35Å1.40ÅAromatic
C4C3doub1.35Å1.40ÅAromatic
C4H4sing1.08Å1.08Å
C3C2sing1.41Å1.39ÅAromatic
C3H3sing1.08Å1.08Å
C2N2sing1.38Å1.33Å
C2N1doub1.33Å1.38ÅAromatic
N2HN21sing0.97Å1.00Å
N2HN22sing0.97Å1.00Å
N1C1sing1.33Å1.38ÅAromatic
C1O1doub1.22Å1.23Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N5C13H131109.4°109.5°
N5C13H132109.4°109.5°
N5C13H133109.5°109.5°
C13N5C12117.3°111.0°
C13N5C11120.9°111.0°
H131C13H132109.5°109.5°
H131C13H133109.4°109.5°
H132C13H133109.5°109.5°
C12N5C11121.7°110.9°
N5C12H121109.5°109.5°
N5C12H122109.5°109.5°
N5C12H123109.5°109.4°
N5C11C10117.6°120.3°
N5C11C6'123.8°120.3°
H121C12H122109.5°109.5°
H121C12H123109.4°109.4°
H122C12H123109.5°109.5°
C10C11C6'118.6°119.4°
C11C10C9'121.5°120.7°
C11C10H10119.3°119.6°
C11C6'C7'119.6°119.3°
C11C6'C5'122.1°121.3°
C9'C10H10119.2°119.6°
C10C9'C8'119.5°121.1°
C10C9'H9'120.3°119.5°
C8'C9'H9'120.2°119.4°
C9'C8'C7'120.3°119.9°
C9'C8'H8'119.9°120.0°
C7'C8'H8'119.8°120.0°
C8'C7'C6'120.5°119.5°
C8'C7'C2'119.0°121.2°
C6'C7'C2'120.5°119.3°
C7'C6'C5'118.3°119.4°
C7'C2'C3'120.9°119.7°
C7'C2'S1119.4°120.1°
C6'C5'C4'120.7°119.7°
C6'C5'H5'119.7°120.2°
C4'C5'H5'119.6°120.2°
C5'C4'C3'120.6°121.0°
C5'C4'H4'119.7°119.5°
C3'C4'H4'119.7°119.5°
C4'C3'C2'118.9°120.9°
C4'C3'H3'120.6°119.6°
C2'C3'H3'120.5°119.5°
C3'C2'S1119.7°120.2°
C2'S1O3'110.2°106.3°
C2'S1O4'110.2°106.4°
C2'S1N4105.6°107.2°
O3'S1O4'109.3°123.2°
O3'S1N4111.7°106.4°
O4'S1N4109.8°106.4°
S1N4C1'106.7°120.0°
S1N4HN4110.4°120.0°
C1'N4HN4110.4°120.0°
N4C1'C9105.5°109.5°
N4C1'H1'1111.7°109.4°
N4C1'H1'2110.8°109.5°
C9C1'H1'1111.7°109.5°
C9C1'H1'2110.8°109.5°
C1'C9O2'106.9°109.5°
C1'C9H91110.9°109.5°
C1'C9H92110.3°109.5°
H1'1C1'H1'2106.4°109.5°
O2'C9H91110.9°109.5°
O2'C9H92110.3°109.5°
C9O2'P2114.6°123.0°
H91C9H92107.5°109.4°
O2'P2O1'108.6°109.4°
O2'P2O9111.3°109.5°
O2'P2O896.2°109.5°
O1'P2O9119.5°109.4°
O1'P2O8110.2°109.5°
O9P2O8108.6°109.5°
P2O9HO9109.5°114.0°
P2O8P1122.2°134.0°
O8P1O7106.4°109.5°
O8P1O6110.7°109.5°
O8P1O5106.7°109.5°
O7P1O6119.2°109.5°
O7P1O5106.7°109.4°
O6P1O5106.5°109.5°
P1O6HO6109.5°114.0°
P1O5C14110.3°123.1°
O5C14C8116.7°109.5°
O5C14H141105.5°109.5°
O5C14H142107.1°109.5°
C8C14H141105.5°109.5°
C8C14H142107.2°109.5°
C14C8O2102.3°109.9°
C14C8C7109.2°109.9°
C14C8H8113.3°109.9°
H141C14H142115.3°109.4°
O2C8C7106.6°107.3°
O2C8H8115.6°110.0°
C8O2C5109.4°107.0°
C7C8H8109.4°109.9°
C8C7O4109.1°110.5°
C8C7C6105.1°104.2°
C8C7H7112.1°110.5°
O2C5C6105.3°103.5°
O2C5N3113.9°110.6°
O2C5H5112.1°110.6°
O4C7C6108.3°110.5°
O4C7H7109.2°110.5°
C7O4HO4109.5°114.0°
C6C7H7112.9°110.6°
C7C6O3108.1°110.9°
C7C6C5103.8°102.1°
C7C6H6113.7°110.9°
O3C6C5108.8°110.9°
O3C6H6109.1°110.8°
C6O3HO3109.5°114.0°
C5C6H6113.1°110.9°
C6C5N3116.5°110.6°
C6C5H5109.3°110.6°
N3C5H599.8°110.6°
C5N3C4124.7°119.9°
C5N3C1116.8°119.8°
C4N3C1118.5°120.3°
N3C4C3120.1°119.3°
N3C4H4120.0°120.3°
N3C1N1120.6°121.1°
N3C1O1120.4°119.5°
C3C4H4119.9°120.4°
C4C3C2120.1°119.0°
C4C3H3120.0°120.5°
C2C3H3120.0°120.5°
C3C2N2121.7°120.2°
C3C2N1119.8°119.6°
N2C2N1118.5°120.2°
C2N2HN21125.5°120.0°
C2N2HN22109.0°120.0°
C2N1C1120.9°120.7°
HN21N2HN22125.5°120.0°
N1C1O1119.1°119.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N5C13H131H132120.0°120.0°
N5C13H131H133120.0°120.0°
N5C13H132H133120.0°120.0°
C13N5C12C11178.2°123.9°
C13N5C12H12194.2°59.9°
C13N5C12H12225.8°180.0°
C13N5C12H123145.8°60.0°
C13N5C11C1046.6°60.0°
C13N5C11C6'134.2°119.7°
H131C13H132H133120.0°120.0°
H131C13N5C12139.0°56.1°
H131C13N5C1142.8°180.0°
H132C13N5C12100.9°176.1°
H132C13N5C1177.3°60.0°
H133C13N5C1219.1°63.9°
H133C13N5C11162.7°60.0°
N5C12H121H122120.0°120.1°
N5C12H121H123120.0°119.9°
N5C12H122H123120.0°119.9°
C12N5C11C10131.5°64.0°
C12N5C11C6'47.7°116.3°
C11N5C12H12187.6°64.0°
C11N5C12H122152.4°56.1°
C11N5C12H12332.4°176.0°
N5C11C10C6'179.2°179.7°
N5C11C10C9'179.9°180.0°
N5C11C10H100.1°0.1°
N5C11C6'C7'179.7°179.7°
N5C11C6'C5'0.5°0.0°
H121C12H122H123120.0°120.0°
C11C10C9'H10180.0°180.0°
C11C10C9'C8'0.3°0.0°
C11C10C9'H9'179.6°179.9°
C10C11C6'C7'0.5°0.6°
C10C11C6'C5'179.7°179.7°
C6'C11C10C9'0.7°0.3°
C6'C11C10H10179.4°179.7°
C11C6'C7'C8'0.1°0.6°
C11C6'C7'C5'179.8°179.7°
C11C6'C7'C2'179.8°179.8°
C11C6'C5'C4'179.9°180.0°
C11C6'C5'H5'0.0°0.1°
C10C9'C8'H9'180.0°179.9°
C10C9'C8'C7'0.2°0.0°
C10C9'C8'H8'179.8°180.0°
H10C10C9'C8'179.7°179.9°
H10C10C9'H9'0.3°0.1°
C9'C8'C7'H8'180.0°180.0°
C9'C8'C7'C6'0.3°0.3°
C9'C8'C7'C2'179.9°179.9°
H9'C9'C8'C7'179.9°179.9°
H9'C9'C8'H8'0.1°0.1°
C8'C7'C6'C2'179.9°179.6°
C8'C7'C6'C5'179.9°179.7°
C8'C7'C2'C3'179.6°179.1°
C8'C7'C2'S10.7°0.1°
H8'C8'C7'C6'179.7°179.7°
H8'C8'C7'C2'0.1°0.0°
C7'C6'C5'C4'0.1°0.3°
C7'C6'C5'H5'179.8°179.8°
C6'C7'C2'C3'0.6°0.5°
C6'C7'C2'S1179.4°179.7°
C2'C7'C6'C5'0.0°0.1°
C7'C2'C3'C4'0.9°0.8°
C7'C2'C3'S1178.9°179.2°
C7'C2'C3'H3'179.1°179.7°
C7'C2'S1O3'118.6°176.8°
C7'C2'S1O4'2.1°50.3°
C7'C2'S1N4120.6°63.3°
C6'C5'C4'H5'180.0°179.9°
C6'C5'C4'C3'0.2°0.0°
C6'C5'C4'H4'179.8°180.0°
C5'C4'C3'H4'180.0°180.0°
C5'C4'C3'C2'0.7°0.6°
C5'C4'C3'H3'179.3°179.9°
H5'C5'C4'C3'179.8°179.9°
H5'C5'C4'H4'0.2°0.1°
C4'C3'C2'H3'180.0°179.5°
C4'C3'C2'S1179.8°180.0°
H4'C4'C3'C2'179.3°179.4°
H4'C4'C3'H3'0.7°0.1°
C3'C2'S1O3'62.5°2.4°
C3'C2'S1O4'176.8°130.5°
C3'C2'S1N458.3°115.9°
H3'C3'C2'S10.2°0.5°
C2'S1O3'O4'121.3°122.9°
C2'S1O3'N4117.1°114.1°
C2'S1O4'N4115.9°114.1°
C2'S1N4C1'121.5°63.8°
C2'S1N4HN41.5°116.2°
O3'S1O4'N4122.8°123.0°
O3'S1N4C1'118.7°49.7°
O3'S1N4HN4121.3°130.3°
O4'S1N4C1'2.7°177.3°
O4'S1N4HN4117.3°2.6°
S1N4C1'HN4120.0°180.0°
S1N4C1'C983.6°163.9°
S1N4C1'H1'1154.8°76.2°
S1N4C1'H1'236.4°43.9°
N4C1'C9H1'1121.5°119.9°
N4C1'C9H1'2120.0°120.0°
N4C1'H1'1H1'2121.0°120.0°
N4C1'C9O2'92.4°65.0°
N4C1'C9H91146.6°175.0°
N4C1'C9H9227.6°55.0°
HN4N4C1'C9156.4°16.1°
HN4N4C1'H1'134.8°103.8°
HN4N4C1'H1'283.6°136.1°
C9C1'H1'1H1'2121.1°120.0°
C1'C9O2'H91121.0°120.0°
C1'C9O2'H92120.0°120.0°
C1'C9H91H92120.7°120.0°
C1'C9O2'P2126.5°180.0°
H1'1C1'C9O2'29.1°54.9°
H1'1C1'C9H9191.9°65.1°
H1'1C1'C9H92149.1°175.0°
H1'2C1'C9O2'147.6°175.0°
H1'2C1'C9H9126.6°55.0°
H1'2C1'C9H9292.4°64.9°
O2'C9H91H92120.7°120.0°
C9O2'P2O1'5.2°55.1°
C9O2'P2O9138.7°64.9°
C9O2'P2O8108.5°175.0°
H91C9O2'P25.5°60.1°
H92C9O2'P2113.5°59.9°
O2'P2O1'O9129.1°120.1°
O2'P2O1'O8104.1°120.0°
O2'P2O9O8104.7°120.0°
O2'P2O9HO9177.3°60.0°
O2'P2O8P187.1°165.0°
O1'P2O9O8127.5°120.0°
O1'P2O9HO954.8°180.0°
O1'P2O8P1160.5°45.0°
O9P2O8P127.9°74.9°
O8P2O9HO972.7°60.0°
P2O8P1O7152.0°40.0°
P2O8P1O677.1°80.0°
P2O8P1O538.4°160.0°
O8P1O7O6125.9°120.0°
O8P1O7O5113.6°120.0°
O8P1O6O5115.6°120.0°
O8P1O6HO658.4°60.0°
O8P1O5C14157.8°175.0°
O7P1O6O5120.6°120.0°
O7P1O6HO665.4°180.0°
O7P1O5C1444.4°55.0°
O6P1O5C1484.0°65.0°
O5P1O6HO6174.0°60.0°
P1O5C14C8175.9°180.0°
P1O5C14H14167.4°60.0°
P1O5C14H14255.9°60.0°
O5C14C8H141116.7°120.0°
O5C14C8H142120.0°120.0°
O5C14H141H142118.0°120.0°
O5C14C8O2177.0°66.5°
O5C14C8C770.3°175.7°
O5C14C8H851.9°54.6°
C8C14H141H142118.0°120.0°
C14C8O2C7114.6°119.4°
C14C8O2H8123.6°121.0°
C14C8C7H8124.5°121.0°
C14C8O2C5110.9°145.9°
C14C8C7O4118.4°119.9°
C14C8C7C6125.7°121.4°
C14C8C7H72.7°2.7°
H141C14C8O266.3°53.5°
H141C14C8C746.3°64.3°
H141C14C8H8168.5°174.6°
H142C14C8O257.0°173.5°
H142C14C8C7169.7°55.7°
H142C14C8H868.1°65.4°
O2C8C7H8125.7°119.6°
O2C8C7O4131.8°120.7°
O2C8C7C615.9°2.0°
O2C8C7H7107.1°116.7°
C8O2C5C621.7°40.1°
C8O2C5N3107.1°158.6°
C8O2C5H5140.5°78.4°
C7C8O2C53.7°26.5°
C8C7O4C6113.9°114.7°
C8C7O4H7122.8°122.6°
C8C7C6H7122.5°118.7°
C8C7O4HO470.9°180.0°
C8C7C6O387.0°139.1°
C8C7C6C528.4°20.9°
C8C7C6H6151.7°97.4°
H8C8O2C5125.6°93.0°
H8C8C7O46.1°1.1°
H8C8C7C6109.8°117.5°
H8C8C7H7127.2°123.7°
O2C5C6C731.0°37.0°
O2C5C6O384.0°155.2°
O2C5C6N3127.3°118.5°
O2C5C6H5120.6°118.5°
O2C5C6H6154.6°81.2°
O2C5N3H5119.6°123.0°
O2C5N3C450.1°126.5°
O2C5N3C1129.3°53.3°
O4C7C6H7121.0°122.6°
O4C7C6O329.5°20.4°
O4C7C6C5144.9°97.8°
O4C7C6H691.8°144.0°
C6C7O4HO443.0°65.3°
C7C6O3C5112.1°112.7°
C7C6O3H6124.1°123.6°
C7C6C5H6123.7°118.2°
C7C6O3HO3139.3°61.4°
C7C6C5N396.4°155.6°
C7C6C5H5151.6°81.5°
H7C7O4HO4166.3°57.4°
H7C7C6O3150.5°102.2°
H7C7C6C594.1°139.6°
H7C7C6H629.2°21.3°
O3C6C5H6121.4°123.6°
O3C6C5N3148.6°86.2°
O3C6C5H536.6°36.7°
C5C6O3HO327.2°174.1°
C6C5N3H5117.4°122.9°
C6C5N3C472.8°119.4°
C6C5N3C1107.8°60.8°
H6C6O3HO396.5°62.2°
H6C6C5N327.3°37.3°
H6C6C5H584.8°160.3°
C5N3C4C1179.4°179.8°
C5N3C4C3179.2°180.0°
C5N3C4H40.8°0.1°
C5N3C1N1178.8°179.7°
C5N3C1O11.0°0.0°
H5C5N3C4169.7°3.5°
H5C5N3C19.7°176.3°
N3C4C3H4180.0°179.9°
N3C4C3C20.3°0.1°
N3C4C3H3179.7°180.0°
C4N3C1N10.7°0.5°
C4N3C1O1179.6°179.8°
C1N3C4C30.2°0.2°
C1N3C4H4179.8°179.7°
N3C1N1C20.7°0.6°
N3C1N1O1179.8°179.7°
C4C3C2H3180.0°180.0°
C4C3C2N2180.0°180.0°
C4C3C2N10.3°0.0°
H4C4C3C2179.7°180.0°
H4C4C3H30.3°0.0°
C3C2N2N1179.7°179.9°
C3C2N2HN21179.9°0.1°
C3C2N2HN220.2°180.0°
C3C2N1C10.2°0.3°
H3C3C2N20.0°0.1°
H3C3C2N1179.7°180.0°
C2N2HN21HN22180.0°179.9°
N2C2N1C1179.6°179.7°
N1C2N2HN210.1°180.0°
N1C2N2HN22179.9°0.1°
C2N1C1O1179.6°179.7°

248636

PDB entries from 2026-02-04

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