English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

2A9

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O7	C11	sing	1.43Å	1.42Å
C11	C6	sing	1.51Å	1.40Å
C6	C1	sing	1.38Å	1.39Å	Aromatic
C6	C5	doub	1.38Å	1.39Å	Aromatic
C1	C2	doub	1.39Å	1.39Å	Aromatic
C2	C3	sing	1.39Å	1.39Å	Aromatic
C2	O8	sing	1.36Å	1.25Å
C3	C4	doub	1.38Å	1.39Å	Aromatic
C3	O6	sing	1.36Å	1.33Å
C5	C4	sing	1.38Å	1.39Å	Aromatic
O6	C10	sing	1.43Å	1.42Å
O7	H7	sing	0.97Å	0.95Å
C11	H111	sing	1.09Å	1.10Å
C11	H112	sing	1.09Å	1.10Å
C1	H1	sing	1.08Å	1.08Å
C5	H5	sing	1.08Å	1.08Å
O8	H8	sing	0.97Å	0.95Å
C4	H4	sing	1.08Å	1.08Å
C10	H101	sing	1.09Å	1.10Å
C10	H102	sing	1.09Å	1.10Å
C10	H103	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O7	C11	C6	120.0°	109.5°
C11	O7	H7	109.5°	114.0°
O7	C11	H111	106.1°	109.5°
O7	C11	H112	106.1°	109.5°
C11	C6	C1	120.1°	119.9°
C11	C6	C5	119.9°	119.9°
C6	C11	H111	106.1°	109.4°
C6	C11	H112	106.1°	109.5°
C1	C6	C5	120.0°	120.1°
C6	C1	C2	120.0°	120.0°
C6	C1	H1	120.0°	120.0°
C6	C5	C4	120.0°	120.1°
C6	C5	H5	120.0°	119.9°
C1	C2	C3	120.0°	119.9°
C1	C2	O8	120.0°	120.1°
C2	C1	H1	120.0°	120.0°
C3	C2	O8	120.0°	120.1°
C2	C3	C4	120.0°	119.9°
C2	C3	O6	120.0°	120.1°
C2	O8	H8	109.5°	114.0°
C4	C3	O6	120.0°	120.1°
C3	C4	C5	120.0°	120.0°
C3	C4	H4	120.0°	120.0°
C3	O6	C10	120.0°	117.0°
C4	C5	H5	120.0°	120.0°
C5	C4	H4	120.0°	120.0°
O6	C10	H101	109.5°	109.5°
O6	C10	H102	109.5°	109.5°
O6	C10	H103	109.4°	109.5°
H111	C11	H112	112.6°	109.5°
H101	C10	H102	109.4°	109.4°
H101	C10	H103	109.4°	109.4°
H102	C10	H103	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O7	C11	C6	H111	120.0°	120.0°
O7	C11	C6	H112	120.0°	120.0°
O7	C11	C6	C1	25.6°	90.0°
O7	C11	C6	C5	154.4°	90.3°
O7	C11	H111	H112	115.7°	120.0°
C11	C6	C1	C5	180.0°	179.7°
C11	C6	C1	C2	180.0°	180.0°
C11	C6	C5	C4	180.0°	179.7°
C6	C11	O7	H7	180.0°	180.0°
C6	C11	H111	H112	115.7°	120.0°
C11	C6	C1	H1	0.0°	0.1°
C11	C6	C5	H5	0.0°	0.0°
C6	C1	C2	H1	180.0°	179.9°
C6	C1	C2	C3	0.0°	0.1°
C6	C1	C2	O8	180.0°	180.0°
C1	C6	C5	C4	0.1°	0.5°
C1	C6	C11	H111	145.7°	30.0°
C1	C6	C11	H112	94.4°	150.0°
C1	C6	C5	H5	179.9°	179.7°
C5	C6	C1	C2	0.0°	0.3°
C6	C5	C4	C3	0.1°	0.5°
C6	C5	C4	H5	180.0°	179.8°
C5	C6	C11	H111	34.4°	149.7°
C5	C6	C11	H112	85.6°	29.7°
C5	C6	C1	H1	180.0°	179.8°
C6	C5	C4	H4	179.9°	179.7°
C1	C2	C3	O8	179.9°	180.0°
C1	C2	C3	C4	0.1°	0.1°
C1	C2	C3	O6	179.9°	180.0°
C1	C2	O8	H8	180.0°	90.0°
C2	C3	C4	O6	179.9°	179.9°
C2	C3	C4	C5	0.1°	0.3°
C2	C3	O6	C10	157.2°	179.9°
C3	C2	C1	H1	180.0°	180.0°
C3	C2	O8	H8	0.0°	90.0°
C2	C3	C4	H4	179.9°	179.9°
O8	C2	C3	C4	180.0°	180.0°
O8	C2	C3	O6	0.1°	0.0°
O8	C2	C1	H1	0.0°	0.1°
C3	C4	C5	H4	180.0°	179.8°
C4	C3	O6	C10	22.7°	0.0°
C3	C4	C5	H5	179.9°	179.7°
O6	C3	C4	C5	180.0°	179.8°
O6	C3	C4	H4	0.0°	0.0°
C3	O6	C10	H101	180.0°	60.0°
C3	O6	C10	H102	60.0°	60.0°
C3	O6	C10	H103	60.0°	180.0°
O6	C10	H101	H102	120.0°	120.1°
O6	C10	H101	H103	120.0°	120.0°
O6	C10	H102	H103	120.0°	120.0°
H7	O7	C11	H111	60.0°	60.0°
H7	O7	C11	H112	60.0°	60.1°
H5	C5	C4	H4	0.1°	0.1°
H101	C10	H102	H103	120.0°	119.9°

222415

PDB entries from 2024-07-10

PDB statistics

PDBj update info

Contact PDBj

numon