Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

25D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.51Å1.49Å
C1H1sing1.09Å1.10Å
C1H1Asing1.09Å1.10Å
C1H1Bsing1.09Å1.10Å
C2C37doub1.38Å1.37ÅAromatic
C2C3sing1.38Å1.38ÅAromatic
C3C4doub1.38Å1.37ÅAromatic
C3H3sing1.08Å1.08Å
C4C6sing1.39Å1.37ÅAromatic
C4C5sing1.51Å1.49Å
C5H5sing1.09Å1.10Å
C5H5Asing1.09Å1.10Å
C5H5Bsing1.09Å1.10Å
C35C6doub1.39Å1.38ÅAromatic
C6N7sing1.40Å1.40Å
C8N7sing1.35Å1.38Å
N7HN7sing0.97Å1.00Å
N10C8sing1.35Å1.39Å
C8O9doub1.22Å1.22Å
C11N10sing1.39Å1.41Å
N10HN10sing0.97Å1.00Å
C20C11doub1.41Å1.38ÅAromatic
C11C12sing1.37Å1.38ÅAromatic
C13C12doub1.40Å1.38ÅAromatic
C12H12sing1.08Å1.08Å
C18C13sing1.42Å1.37ÅAromatic
C13C14sing1.41Å1.38ÅAromatic
C15C14doub1.36Å1.38ÅAromatic
C14H14sing1.08Å1.08Å
C16C15sing1.39Å1.38ÅAromatic
C15H15sing1.08Å1.08Å
C17C16doub1.36Å1.38ÅAromatic
C16H16sing1.08Å1.08Å
C17C18sing1.41Å1.38ÅAromatic
C17H17sing1.08Å1.08Å
C19C18doub1.40Å1.38ÅAromatic
C19C20sing1.39Å1.38ÅAromatic
C19H19sing1.08Å1.08Å
C21C20sing1.48Å1.48Å
N23C21sing1.35Å1.39Å
C21O22doub1.22Å1.23Å
C24N23sing1.46Å1.45Å
N23HN23sing0.97Å1.00Å
C32C24sing1.51Å1.51Å
C26C24sing1.53Å1.53Å
C24C25sing1.53Å1.51Å
C25H25sing1.09Å1.10Å
C25H25Asing1.09Å1.10Å
C25H25Bsing1.09Å1.10Å
C27C26sing1.53Å1.53Å
C26C31sing1.53Å1.52Å
C26H26sing1.09Å1.10Å
C28C27sing1.53Å1.51Å
C27H27sing1.09Å1.10Å
C27H27Asing1.09Å1.10Å
C28C29sing1.53Å1.51Å
C28H28sing1.09Å1.10Å
C28H28Asing1.09Å1.10Å
C29C30sing1.53Å1.51Å
C29H29sing1.09Å1.10Å
C29H29Asing1.09Å1.10Å
C30C31sing1.53Å1.51Å
C30H30sing1.09Å1.10Å
C30H30Asing1.09Å1.10Å
C31H31sing1.09Å1.10Å
C31H31Asing1.09Å1.10Å
O33C32doub1.21Å1.25Å
C32O34sing1.34Å1.26Å
O34HO34sing0.97Å0.95Å
C37C35sing1.38Å1.38ÅAromatic
C35C36sing1.51Å1.49Å
C36H36sing1.09Å1.10Å
C36H36Asing1.09Å1.10Å
C36H36Bsing1.09Å1.10Å
C37H37sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1H1109.5°109.4°
C2C1H1A109.5°109.5°
C2C1H1B109.5°109.5°
C1C2C37119.8°119.9°
C1C2C3120.0°119.9°
H1C1H1A109.5°109.5°
H1C1H1B109.4°109.5°
H1AC1H1B109.5°109.5°
C37C2C3120.3°120.1°
C2C37C35119.8°120.1°
C2C37H37120.1°119.9°
C2C3C4120.1°120.1°
C2C3H3119.9°119.9°
C4C3H3119.9°120.0°
C3C4C6119.3°120.0°
C3C4C5120.2°120.0°
C6C4C5120.5°120.0°
C4C6C35121.0°119.8°
C4C6N7119.2°120.1°
C4C5H5109.5°109.5°
C4C5H5A109.4°109.5°
C4C5H5B109.5°109.5°
H5C5H5A109.5°109.5°
H5C5H5B109.4°109.4°
H5AC5H5B109.5°109.5°
C35C6N7119.8°120.1°
C6C35C37119.5°119.9°
C6C35C36120.5°120.0°
C6N7C8120.0°120.0°
C6N7HN7120.0°120.0°
C8N7HN7120.0°120.0°
N7C8N10113.7°120.0°
N7C8O9120.7°120.0°
N10C8O9125.6°120.0°
C8N10C11124.4°120.0°
C8N10HN10117.8°120.0°
C11N10HN10117.8°120.0°
N10C11C20120.0°119.7°
N10C11C12121.2°119.7°
C20C11C12118.7°120.6°
C11C20C19120.5°120.4°
C11C20C21121.2°119.8°
C11C12C13120.7°120.0°
C11C12H12119.6°120.0°
C13C12H12119.7°120.0°
C12C13C18120.2°119.8°
C12C13C14120.3°120.9°
C18C13C14119.5°119.3°
C13C18C17120.2°119.3°
C13C18C19119.6°119.6°
C13C14C15120.5°119.7°
C13C14H14119.8°120.2°
C15C14H14119.7°120.1°
C14C15C16120.0°121.0°
C14C15H15120.0°119.5°
C16C15H15120.0°119.5°
C15C16C17119.6°121.0°
C15C16H16120.2°119.5°
C17C16H16120.2°119.5°
C16C17C18120.2°119.7°
C16C17H17119.9°120.1°
C18C17H17119.9°120.2°
C17C18C19120.2°121.0°
C18C19C20120.2°119.5°
C18C19H19119.9°120.2°
C20C19H19119.9°120.3°
C19C20C21118.3°119.8°
C20C21N23114.9°120.0°
C20C21O22119.0°120.0°
N23C21O22126.1°120.0°
C21N23C24121.6°120.0°
C21N23HN23119.2°120.0°
C24N23HN23119.2°119.9°
N23C24C32106.4°109.5°
N23C24C26111.8°109.5°
N23C24C25109.0°109.5°
C32C24C26107.2°109.4°
C32C24C25109.4°109.5°
C24C32O33118.5°120.0°
C24C32O34118.5°120.0°
C26C24C25112.9°109.5°
C24C26C27112.1°109.5°
C24C26C31111.3°109.5°
C24C26H26105.8°109.4°
C24C25H25109.5°109.5°
C24C25H25A109.5°109.5°
C24C25H25B109.4°109.5°
H25C25H25A109.5°109.5°
H25C25H25B109.5°109.5°
H25AC25H25B109.5°109.4°
C27C26C31107.7°109.5°
C27C26H26109.5°109.5°
C26C27C28110.6°109.5°
C26C27H27109.1°109.5°
C26C27H27A108.8°109.5°
C31C26H26110.4°109.5°
C26C31C30110.3°109.4°
C26C31H31109.2°109.5°
C26C31H31A109.0°109.5°
C28C27H27109.1°109.5°
C28C27H27A108.9°109.4°
C27C28C29110.3°109.5°
C27C28H28109.2°109.5°
C27C28H28A109.0°109.5°
H27C27H27A110.3°109.4°
C29C28H28109.2°109.5°
C29C28H28A109.0°109.4°
C28C29C30108.6°109.4°
C28C29H29109.8°109.5°
C28C29H29A109.9°109.5°
H28C28H28A110.1°109.5°
C30C29H29109.8°109.4°
C30C29H29A110.0°109.4°
C29C30C31109.0°109.5°
C29C30H30109.7°109.5°
C29C30H30A109.8°109.5°
H29C29H29A108.8°109.5°
C31C30H30109.6°109.5°
C31C30H30A109.7°109.5°
C30C31H31109.2°109.4°
C30C31H31A109.0°109.5°
H30C30H30A109.1°109.4°
H31C31H31A110.1°109.5°
O33C32O34122.9°120.0°
C32O34HO34109.5°117.0°
C37C35C36120.0°120.1°
C35C37H37120.1°120.0°
C35C36H36109.5°109.5°
C35C36H36A109.5°109.5°
C35C36H36B109.5°109.5°
H36C36H36A109.5°109.5°
H36C36H36B109.4°109.4°
H36AC36H36B109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1H1H1A120.0°120.0°
C2C1H1H1B120.0°120.0°
C2C1H1AH1B120.0°120.0°
C1C2C37C3179.7°179.8°
C1C2C3C4179.7°180.0°
C1C2C3H30.3°0.0°
C1C2C37C35179.9°179.7°
C1C2C37H370.1°0.1°
H1C1H1AH1B120.0°120.0°
H1C1C2C3779.8°90.0°
H1C1C2C399.9°89.7°
H1AC1C2C37160.1°150.0°
H1AC1C2C320.2°30.2°
H1BC1C2C3740.1°30.0°
H1BC1C2C3140.2°150.3°
C37C2C3C40.0°0.3°
C37C2C3H3180.0°179.8°
C2C37C35C60.3°0.5°
C2C37C35H37180.0°179.8°
C2C37C35C36179.7°179.8°
C2C3C4H3180.0°180.0°
C2C3C4C60.2°0.0°
C2C3C4C5179.9°180.0°
C3C2C37C350.3°0.5°
C3C2C37H37179.7°179.7°
C3C4C6C5179.9°179.9°
C3C4C5H579.6°82.1°
C3C4C5H5A40.4°157.9°
C3C4C5H5B160.5°37.9°
C3C4C6C350.2°0.0°
C3C4C6N7179.3°180.0°
H3C3C4C6179.8°180.0°
H3C3C4C50.1°0.1°
C6C4C5H5100.3°97.9°
C6C4C5H5A139.7°22.2°
C6C4C5H5B19.7°142.2°
C4C6C35N7179.5°180.0°
C4C6N7C891.1°47.2°
C4C6N7HN788.9°132.9°
C4C6C35C370.0°0.3°
C4C6C35C36180.0°180.0°
C4C5H5H5A120.0°120.0°
C4C5H5H5B120.0°120.0°
C4C5H5AH5B120.0°120.0°
C5C4C6C35179.9°180.0°
C5C4C6N70.6°0.0°
H5C5H5AH5B120.0°120.0°
C35C6N7C888.4°132.8°
C35C6N7HN791.6°47.1°
C6C35C37C36180.0°179.7°
C6C35C36H36131.6°94.6°
C6C35C36H36A11.6°145.4°
C6C35C36H36B108.5°25.4°
C6C35C37H37179.7°179.7°
C6N7C8HN7180.0°179.9°
C6N7C8N1011.2°176.6°
C6N7C8O9168.2°3.4°
N7C6C35C37179.5°179.7°
N7C6C35C360.5°0.0°
N7C8N10O9179.4°180.0°
N7C8N10C11173.0°174.7°
N7C8N10HN107.0°5.2°
HN7N7C8N10168.8°3.4°
HN7N7C8O911.7°176.5°
C8N10C11HN10180.0°179.9°
C8N10C11C20150.3°141.6°
C8N10C11C1230.8°38.7°
O9C8N10C117.6°5.3°
O9C8N10HN10172.4°174.8°
N10C11C20C12178.9°179.7°
N10C11C12C13179.4°180.0°
N10C11C12H120.6°0.0°
N10C11C20C19179.4°179.7°
N10C11C20C211.0°0.3°
HN10N10C11C2029.7°38.3°
HN10N10C11C12149.2°141.4°
C20C11C12C130.6°0.2°
C20C11C12H12179.4°179.7°
C11C20C19C180.3°0.5°
C11C20C19C21179.6°179.4°
C11C20C19H19179.7°179.7°
C11C20C21N23146.2°176.2°
C11C20C21O2232.9°3.8°
C11C12C13H12180.0°179.9°
C11C12C13C180.4°0.0°
C11C12C13C14179.7°180.0°
C12C11C20C190.5°0.5°
C12C11C20C21179.9°180.0°
C12C13C18C14179.9°180.0°
C12C13C14C15179.9°180.0°
C12C13C14H140.1°0.0°
C12C13C18C17179.9°180.0°
C12C13C18C190.2°0.0°
H12C12C13C18179.6°180.0°
H12C12C13C140.3°0.0°
C18C13C14C150.0°0.0°
C18C13C14H14180.0°180.0°
C13C18C17C160.0°0.1°
C13C18C17C19179.9°180.0°
C13C18C17H17180.0°180.0°
C13C18C19C200.1°0.3°
C13C18C19H19179.8°179.9°
C13C14C15H14180.0°180.0°
C13C14C15C160.0°0.0°
C13C14C15H15180.0°180.0°
C14C13C18C170.0°0.0°
C14C13C18C19179.9°180.0°
C14C15C16H15180.0°180.0°
C14C15C16C170.1°0.0°
C14C15C16H16179.9°180.0°
H14C14C15C16180.0°180.0°
H14C14C15H150.0°0.0°
C15C16C17H16180.0°180.0°
C15C16C17C180.1°0.1°
C15C16C17H17180.0°180.0°
H15C15C16C17180.0°180.0°
H15C15C16H160.1°0.0°
C16C17C18H17180.0°179.9°
C16C17C18C19179.9°180.0°
H16C16C17C18179.9°180.0°
H16C16C17H170.1°0.1°
C17C18C19C20180.0°179.7°
C17C18C19H190.0°0.0°
H17C17C18C190.1°0.0°
C18C19C20H19180.0°179.8°
C18C19C20C21179.9°180.0°
C19C20C21N2333.4°4.4°
C19C20C21O22147.5°175.7°
H19C19C20C210.1°0.3°
C20C21N23O22179.1°179.9°
C20C21N23C24165.6°180.0°
C20C21N23HN2314.4°0.1°
C21N23C24HN23180.0°180.0°
C21N23C24C3260.0°60.0°
C21N23C24C26176.7°180.0°
C21N23C24C2557.8°60.0°
O22C21N23C2413.5°0.1°
O22C21N23HN23166.6°180.0°
N23C24C32C26119.7°120.0°
N23C24C32C25117.6°120.0°
N23C24C26C25123.3°120.0°
N23C24C25H2568.7°60.0°
N23C24C25H25A171.3°180.0°
N23C24C25H25B51.3°60.0°
N23C24C26C27164.0°65.0°
N23C24C26C3175.3°175.0°
N23C24C26H2644.7°55.0°
N23C24C32O3345.8°145.0°
N23C24C32O34135.7°35.0°
HN23N23C24C32120.0°120.0°
HN23N23C24C263.3°0.0°
HN23N23C24C25122.1°120.0°
C32C24C26C25120.5°120.0°
C32C24C25H25175.4°180.0°
C32C24C25H25A55.4°60.0°
C32C24C25H25B64.6°60.0°
C32C24C26C2747.9°55.0°
C32C24C26C31168.6°65.0°
C32C24C26H2671.5°175.0°
C24C32O33O34178.4°180.0°
C24C32O34HO34178.4°180.0°
C26C24C25H2556.2°60.0°
C26C24C25H25A63.8°60.0°
C26C24C25H25B176.2°180.0°
C24C26C27C31122.8°120.0°
C24C26C27H26117.2°119.9°
C24C26C31H26117.2°120.0°
C24C26C27C28179.1°180.0°
C24C26C27H2759.2°60.0°
C24C26C27H27A61.3°60.0°
C24C26C31C30176.7°180.0°
C24C26C31H3163.2°60.1°
C24C26C31H31A57.1°60.0°
C26C24C32O3373.9°95.0°
C26C24C32O34104.6°85.1°
C24C25H25H25A120.0°120.0°
C24C25H25H25B120.0°120.0°
C24C25H25AH25B120.0°120.0°
C25C24C26C2772.6°175.0°
C25C24C26C3148.1°55.0°
C25C24C26H26168.0°65.1°
C25C24C32O33163.4°25.0°
C25C24C32O3418.1°155.0°
H25C25H25AH25B120.0°120.0°
C27C26C31H26119.5°120.0°
C26C27C28H27120.0°120.0°
C26C27C28H27A119.5°120.0°
C26C27H27H27A119.5°120.0°
C26C27C28C2959.3°60.0°
C26C27C28H2860.7°60.0°
C26C27C28H28A178.9°180.0°
C27C26C31C3060.0°60.0°
C27C26C31H3160.0°59.9°
C27C26C31H31A179.6°180.0°
C31C26C27C2858.1°60.0°
C31C26C27H27178.1°180.0°
C31C26C27H27A61.5°60.0°
C26C31C30C2962.5°60.0°
C26C31C30H31120.0°119.9°
C26C31C30H31A119.7°120.0°
C26C31C30H3057.5°60.0°
C26C31C30H30A177.3°180.0°
C26C31H31H31A119.6°120.1°
H26C26C27C2862.0°60.0°
H26C26C27H2758.0°60.0°
H26C26C27H27A178.5°180.0°
H26C26C31C3059.5°60.0°
H26C26C31H31179.6°180.0°
H26C26C31H31A60.1°60.0°
C28C27H27H27A119.5°120.0°
C27C28C29H28120.0°120.0°
C27C28C29H28A119.7°120.0°
C27C28H28H28A119.7°120.0°
C27C28C29C3059.8°60.0°
C27C28C29H29179.9°180.0°
C27C28C29H29A60.5°59.9°
H27C27C28C29179.3°180.0°
H27C27C28H2859.3°60.0°
H27C27C28H28A61.1°60.0°
H27AC27C28C2960.3°60.0°
H27AC27C28H28179.8°180.0°
H27AC27C28H28A59.4°59.9°
C29C28H28H28A119.6°120.0°
C28C29C30H29120.0°120.0°
C28C29C30H29A120.3°120.0°
C28C29H29H29A120.3°120.1°
C28C29C30C3161.1°60.0°
C28C29C30H3058.9°60.0°
C28C29C30H30A178.7°180.0°
H28C28C29C3060.1°60.0°
H28C28C29H2959.9°59.9°
H28C28C29H29A179.5°180.0°
H28AC28C29C30179.5°180.0°
H28AC28C29H2960.5°60.1°
H28AC28C29H29A59.1°60.0°
C30C29H29H29A120.4°120.0°
C29C30C31H30120.0°120.0°
C29C30C31H30A120.2°120.0°
C29C30H30H30A120.2°120.0°
C29C30C31H3157.5°59.9°
C29C30C31H31A177.8°180.0°
H29C29C30C31178.9°180.0°
H29C29C30H3061.1°60.0°
H29C29C30H30A58.7°60.0°
H29AC29C30C3159.3°60.0°
H29AC29C30H30179.3°180.0°
H29AC29C30H30A60.9°60.0°
C31C30H30H30A120.2°120.0°
C30C31H31H31A119.7°120.0°
H30C30C31H31177.5°180.0°
H30C30C31H31A62.2°60.0°
H30AC30C31H3162.7°60.0°
H30AC30C31H31A57.6°60.0°
O33C32O34HO340.0°0.0°
C37C35C36H3648.4°85.1°
C37C35C36H36A168.4°34.9°
C37C35C36H36B71.6°154.9°
C35C36H36H36A120.0°120.0°
C35C36H36H36B120.0°120.0°
C35C36H36AH36B120.0°120.0°
C36C35C37H370.3°0.0°
H36C36H36AH36B120.0°120.0°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon