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Summary Geometry Related PDB entries

23B

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O2	C1	doub	1.21Å	1.25Å
C1	O1	sing	1.34Å	1.26Å
C1	C2	sing	1.51Å	1.49Å
O1	HO1	sing	0.97Å	0.95Å
C5	C2	sing	1.53Å	1.54Å
C2	C3	sing	1.53Å	1.54Å
C2	O3	sing	1.43Å	1.45Å
C3	C4	sing	1.53Å	1.51Å
C3	O4	sing	1.43Å	1.45Å
C3	H3	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C4	H4	sing	1.09Å	1.10Å
C4	H4A	sing	1.09Å	1.10Å
C4	H4B	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
C5	H5	sing	1.09Å	1.10Å
C5	H5A	sing	1.09Å	1.10Å
C5	H5B	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O2	C1	O1	124.4°	120.0°
O2	C1	C2	116.0°	120.0°
O1	C1	C2	119.5°	120.0°
C1	O1	HO1	109.5°	117.0°
C1	C2	C5	109.7°	109.5°
C1	C2	C3	109.2°	109.4°
C1	C2	O3	106.9°	109.5°
C5	C2	C3	111.6°	109.5°
C5	C2	O3	109.4°	109.5°
C2	C5	H5	109.5°	109.5°
C2	C5	H5A	109.5°	109.5°
C2	C5	H5B	109.5°	109.5°
C3	C2	O3	110.0°	109.5°
C2	C3	C4	113.6°	109.4°
C2	C3	O4	109.3°	109.4°
C2	C3	H3	107.8°	109.5°
C2	O3	HO3	109.5°	114.0°
C4	C3	O4	108.9°	109.5°
C4	C3	H3	108.2°	109.5°
C3	C4	H4	109.5°	109.5°
C3	C4	H4A	109.5°	109.5°
C3	C4	H4B	109.5°	109.5°
O4	C3	H3	109.0°	109.5°
C3	O4	HO4	109.5°	114.0°
H4	C4	H4A	109.5°	109.4°
H4	C4	H4B	109.4°	109.5°
H4A	C4	H4B	109.5°	109.5°
H5	C5	H5A	109.4°	109.5°
H5	C5	H5B	109.5°	109.4°
H5A	C5	H5B	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O2	C1	O1	C2	179.5°	179.7°
O2	C1	O1	HO1	0.0°	0.3°
O2	C1	C2	C5	68.4°	95.3°
O2	C1	C2	C3	54.2°	24.7°
O2	C1	C2	O3	173.1°	144.7°
O1	C1	C2	C5	111.2°	85.0°
O1	C1	C2	C3	126.2°	155.0°
O1	C1	C2	O3	7.3°	35.0°
C2	C1	O1	HO1	179.5°	180.0°
C1	C2	C5	C3	121.2°	119.9°
C1	C2	C5	O3	116.9°	120.0°
C1	C2	C3	O3	117.0°	120.0°
C1	C2	C3	C4	173.8°	180.0°
C1	C2	C3	O4	64.3°	60.0°
C1	C2	C3	H3	54.0°	60.0°
C1	C2	O3	HO3	180.0°	60.0°
C1	C2	C5	H5	180.0°	60.0°
C1	C2	C5	H5A	60.0°	180.0°
C1	C2	C5	H5B	60.0°	60.0°
C5	C2	C3	O3	121.6°	120.0°
C5	C2	C3	C4	52.4°	60.0°
C5	C2	C3	O4	174.2°	180.0°
C5	C2	C3	H3	67.4°	60.0°
C5	C2	O3	HO3	61.3°	180.0°
C2	C5	H5	H5A	120.0°	120.0°
C2	C5	H5	H5B	120.0°	120.0°
C2	C5	H5A	H5B	120.0°	120.0°
C2	C3	C4	O4	122.0°	119.9°
C2	C3	C4	H3	119.6°	120.0°
C2	C3	O4	H3	117.5°	120.0°
C3	C2	O3	HO3	61.6°	60.0°
C2	C3	C4	H4	180.0°	60.0°
C2	C3	C4	H4A	60.0°	180.0°
C2	C3	C4	H4B	60.0°	60.0°
C2	C3	O4	HO4	180.0°	60.0°
C3	C2	C5	H5	58.8°	180.0°
C3	C2	C5	H5A	61.2°	60.0°
C3	C2	C5	H5B	178.8°	60.0°
O3	C2	C3	C4	69.2°	60.0°
O3	C2	C3	O4	52.7°	60.0°
O3	C2	C3	H3	171.0°	180.0°
O3	C2	C5	H5	63.1°	60.0°
O3	C2	C5	H5A	176.9°	60.0°
O3	C2	C5	H5B	56.9°	180.0°
C4	C3	O4	H3	117.9°	120.1°
C3	C4	H4	H4A	120.0°	120.0°
C3	C4	H4	H4B	120.0°	120.0°
C3	C4	H4A	H4B	120.0°	120.0°
C4	C3	O4	HO4	55.4°	60.0°
O4	C3	C4	H4	58.0°	60.0°
O4	C3	C4	H4A	178.0°	60.0°
O4	C3	C4	H4B	62.0°	180.0°
H3	C3	C4	H4	60.4°	NaN°
H3	C3	C4	H4A	59.6°	60.0°
H3	C3	C4	H4B	179.6°	60.0°
H3	C3	O4	HO4	62.5°	180.0°
H4	C4	H4A	H4B	120.0°	120.0°
H5	C5	H5A	H5B	120.0°	120.0°

250059

PDB entries from 2026-03-04

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