English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

1Z6

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C10	C9	doub	1.38Å	1.38Å	Aromatic
C10	C11	sing	1.38Å	1.36Å	Aromatic
C9	C8	sing	1.39Å	1.40Å	Aromatic
C6	N4	sing	1.35Å	1.34Å	Aromatic
C6	C7	doub	1.36Å	1.37Å	Aromatic
F12	C11	sing	1.35Å	1.36Å
C11	C13	doub	1.39Å	1.36Å	Aromatic
N4	N3	sing	1.40Å	1.36Å	Aromatic
C8	C7	sing	1.49Å	1.48Å
C8	C14	doub	1.39Å	1.39Å	Aromatic
C7	C2	sing	1.41Å	1.40Å	Aromatic
N3	C2	doub	1.31Å	1.33Å	Aromatic
C2	C1	sing	1.51Å	1.49Å
C13	C14	sing	1.38Å	1.38Å	Aromatic
C1	H1	sing	1.09Å	1.10Å
C1	H2	sing	1.09Å	1.10Å
C1	H3	sing	1.09Å	1.10Å
N4	H4	sing	0.97Å	1.00Å
C6	H5	sing	1.08Å	1.08Å
C10	H6	sing	1.08Å	1.08Å
C13	H7	sing	1.08Å	1.08Å
C14	H8	sing	1.08Å	1.08Å
C9	H9	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C9	C10	C11	118.7°	120.1°
C10	C9	C8	120.3°	119.9°
C9	C10	H6	120.6°	120.0°
C10	C9	H9	119.8°	120.0°
C10	C11	F12	118.6°	119.9°
C10	C11	C13	122.9°	120.2°
C11	C10	H6	120.6°	119.9°
C9	C8	C7	120.8°	120.1°
C9	C8	C14	118.7°	119.8°
C8	C9	H9	119.8°	120.0°
N4	C6	C7	106.5°	107.6°
C6	N4	N3	112.4°	108.2°
C6	N4	H4	123.8°	125.8°
N4	C6	H5	126.7°	126.2°
C6	C7	C8	125.2°	126.2°
C6	C7	C2	105.7°	107.6°
C7	C6	H5	126.8°	126.2°
F12	C11	C13	118.5°	119.9°
C11	C13	C14	118.6°	120.1°
C11	C13	H7	120.7°	119.9°
N4	N3	C2	104.7°	108.5°
N3	N4	H4	123.8°	125.9°
C7	C8	C14	120.5°	120.1°
C8	C7	C2	129.1°	126.2°
C8	C14	C13	120.7°	119.9°
C8	C14	H8	119.6°	120.1°
C7	C2	N3	110.7°	108.1°
C7	C2	C1	129.3°	126.0°
N3	C2	C1	120.0°	125.9°
C2	C1	H1	109.5°	109.5°
C2	C1	H2	109.4°	109.5°
C2	C1	H3	109.5°	109.4°
C14	C13	H7	120.7°	120.0°
C13	C14	H8	119.7°	120.0°
H1	C1	H2	109.5°	109.5°
H1	C1	H3	109.5°	109.5°
H2	C1	H3	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C9	C10	C11	H6	180.0°	180.0°
C10	C9	C8	H9	180.0°	180.0°
C9	C10	C11	F12	179.7°	180.0°
C9	C10	C11	C13	0.5°	0.3°
C10	C9	C8	C7	179.9°	180.0°
C10	C9	C8	C14	0.4°	0.3°
C11	C10	C9	C8	0.7°	0.0°
C10	C11	F12	C13	179.8°	179.7°
C10	C11	C13	C14	0.1°	0.3°
C10	C11	C13	H7	180.0°	180.0°
C11	C10	C9	H9	179.3°	180.0°
C9	C8	C7	C6	19.8°	129.7°
C9	C8	C7	C14	179.7°	179.7°
C9	C8	C7	C2	160.4°	50.3°
C9	C8	C14	C13	0.1°	0.3°
C8	C9	C10	H6	179.3°	180.0°
C9	C8	C14	H8	179.9°	179.7°
N4	C6	C7	H5	180.0°	180.0°
C6	N4	N3	H4	180.0°	179.9°
N4	C6	C7	C8	179.8°	179.9°
N4	C6	C7	C2	0.4°	0.1°
C6	N4	N3	C2	0.0°	0.2°
C7	C6	N4	N3	0.2°	0.0°
C6	C7	C8	C2	179.8°	180.0°
C6	C7	C8	C14	160.6°	50.0°
C6	C7	C2	N3	0.4°	0.2°
C6	C7	C2	C1	179.6°	180.0°
C7	C6	N4	H4	179.8°	179.9°
F12	C11	C13	C14	179.8°	180.0°
F12	C11	C10	H6	0.3°	0.0°
F12	C11	C13	H7	0.2°	0.3°
C11	C13	C14	C8	0.3°	0.0°
C11	C13	C14	H7	180.0°	179.7°
C13	C11	C10	H6	179.5°	179.7°
C11	C13	C14	H8	179.7°	180.0°
N4	N3	C2	C7	0.3°	0.2°
N4	N3	C2	C1	179.7°	180.0°
N3	N4	C6	H5	179.8°	180.0°
C8	C7	C2	N3	179.7°	179.8°
C8	C7	C2	C1	0.2°	0.0°
C7	C8	C14	C13	179.6°	180.0°
C8	C7	C6	H5	0.2°	0.2°
C7	C8	C14	H8	0.4°	0.0°
C7	C8	C9	H9	0.0°	0.0°
C14	C8	C7	C2	19.3°	130.0°
C8	C14	C13	H8	180.0°	180.0°
C8	C14	C13	H7	179.7°	179.7°
C14	C8	C9	H9	179.6°	179.7°
C7	C2	N3	C1	180.0°	179.8°
C7	C2	C1	H1	180.0°	90.0°
C7	C2	C1	H2	60.0°	150.0°
C7	C2	C1	H3	59.9°	30.0°
C2	C7	C6	H5	179.6°	179.9°
N3	C2	C1	H1	0.0°	90.3°
N3	C2	C1	H2	120.0°	29.7°
N3	C2	C1	H3	120.0°	149.7°
C2	N3	N4	H4	179.9°	179.9°
C2	C1	H1	H2	120.0°	120.0°
C2	C1	H1	H3	120.0°	119.9°
C2	C1	H2	H3	120.0°	119.9°
H1	C1	H2	H3	120.0°	120.1°
H4	N4	C6	H5	0.2°	0.1°
H6	C10	C9	H9	0.7°	0.0°
H7	C13	C14	H8	0.3°	0.3°

222415

PDB entries from 2024-07-10

PDB statistics

PDBj update info

Contact PDBj

numon