Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1YN

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CL8C45sing1.74Å1.70Å
C45C44doub1.38Å1.41ÅAromatic
C45C46sing1.38Å1.38ÅAromatic
C44C43sing1.38Å1.42ÅAromatic
C46C47doub1.38Å1.40ÅAromatic
C43CL9sing1.74Å1.70Å
C43C42doub1.38Å1.37ÅAromatic
C47C42sing1.38Å1.41ÅAromatic
C42C34sing1.51Å1.48Å
O33C32sing1.45Å1.38Å
O33C34sing1.44Å1.40Å
C32C31sing1.55Å1.46Å
C34O35sing1.43Å1.40Å
C34C36sing1.53Å1.54Å
C31O35sing1.44Å1.37Å
C31C30sing1.53Å1.46Å
C36N37sing1.46Å1.45Å
O29C30sing1.43Å1.41Å
O29C26sing1.36Å1.43Å
N37N41sing1.40Å1.35ÅAromatic
N37C38sing1.34Å1.33ÅAromatic
N41C40doub1.31Å1.33ÅAromatic
C25C26doub1.39Å1.40ÅAromatic
C25C24sing1.38Å1.38ÅAromatic
C26C27sing1.39Å1.44ÅAromatic
C40N39sing1.33Å1.37ÅAromatic
C01C02sing1.53Å1.54Å
C38N39doub1.31Å1.38ÅAromatic
C24C23doub1.39Å1.43ÅAromatic
C27C28doub1.38Å1.40ÅAromatic
C23C28sing1.39Å1.40ÅAromatic
C23N20sing1.40Å1.47Å
C02C03sing1.53Å1.50Å
N20C19sing1.47Å1.45Å
N20C21sing1.47Å1.45Å
C18C19sing1.53Å1.52Å
C18N17sing1.47Å1.45Å
C12C13doub1.38Å1.39ÅAromatic
C12C11sing1.39Å1.41ÅAromatic
C13C14sing1.39Å1.43ÅAromatic
C22C21sing1.53Å1.51Å
C22N17sing1.47Å1.43Å
N10C09doub1.29Å1.36Å
N10N05sing1.40Å1.34Å
C09N08sing1.38Å1.37Å
C03N05sing1.46Å1.45Å
C03C04sing1.53Å1.47Å
N05C06sing1.35Å1.33Å
C11N08sing1.40Å1.46Å
C11C16doub1.39Å1.43ÅAromatic
O07C06doub1.22Å1.23Å
C14N17sing1.40Å1.50Å
C14C15doub1.39Å1.40ÅAromatic
N08C06sing1.35Å1.42Å
C16C15sing1.38Å1.41ÅAromatic
C12H1sing1.08Å1.08Å
C01H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C01H4sing1.09Å1.10Å
C02H5sing1.09Å1.10Å
C02H6sing1.09Å1.10Å
C03H7sing1.09Å1.10Å
C04H8sing1.09Å1.10Å
C04H9sing1.09Å1.10Å
C04H10sing1.09Å1.10Å
C09H11sing1.08Å1.08Å
C13H12sing1.08Å1.08Å
C15H13sing1.08Å1.08Å
C16H14sing1.08Å1.08Å
C18H15sing1.09Å1.10Å
C18H16sing1.09Å1.10Å
C19H17sing1.09Å1.10Å
C19H18sing1.09Å1.10Å
C21H19sing1.09Å1.10Å
C21H20sing1.09Å1.10Å
C22H21sing1.09Å1.10Å
C22H22sing1.09Å1.10Å
C24H23sing1.08Å1.08Å
C25H24sing1.08Å1.08Å
C27H25sing1.08Å1.08Å
C28H26sing1.08Å1.08Å
C30H27sing1.09Å1.10Å
C30H28sing1.09Å1.10Å
C31H29sing1.09Å1.10Å
C32H30sing1.09Å1.10Å
C32H31sing1.09Å1.10Å
C36H32sing1.09Å1.10Å
C36H33sing1.09Å1.10Å
C38H34sing1.08Å1.08Å
C40H35sing1.08Å1.08Å
C44H36sing1.08Å1.08Å
C46H37sing1.08Å1.08Å
C47H38sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CL8C45C44122.1°120.0°
CL8C45C46118.3°120.0°
C44C45C46119.6°120.0°
C45C44C43119.7°119.9°
C45C44H36120.1°120.0°
C45C46C47120.1°120.0°
C45C46H37120.0°120.0°
C44C43CL9119.2°119.9°
C44C43C42119.3°120.0°
C43C44H36120.1°120.0°
C46C47C42120.0°120.1°
C47C46H37120.0°120.0°
C46C47H38120.0°119.9°
CL9C43C42121.3°120.0°
C43C42C47118.7°120.0°
C43C42C34119.8°120.0°
C47C42C34118.6°120.0°
C42C47H38120.0°120.0°
C42C34O33104.6°109.6°
C42C34O35111.0°109.6°
C42C34C36110.0°109.5°
C32O33C34107.4°104.8°
O33C32C31105.3°101.7°
O33C32H30110.5°111.0°
O33C32H31110.5°111.0°
O33C34O35107.6°108.8°
O33C34C36115.5°109.7°
C32C31O35104.9°103.1°
C32C31C30106.9°110.7°
C32C31H29110.9°110.8°
C31C32H30110.5°111.0°
C31C32H31110.5°110.9°
O35C34C36108.0°109.7°
C34O35C31108.3°107.3°
C34C36N37110.2°109.5°
C34C36H32109.3°109.5°
C34C36H33109.3°109.4°
O35C31C30110.6°110.7°
O35C31H29112.3°110.7°
C31C30O29114.6°109.5°
C31C30H27108.2°109.5°
C31C30H28108.2°109.5°
C30C31H29110.9°110.6°
C36N37N41125.3°126.8°
C36N37C38125.5°126.8°
N37C36H32109.3°109.5°
N37C36H33109.3°109.5°
C30O29C26123.3°117.0°
O29C30H27108.2°109.5°
O29C30H28108.2°109.4°
O29C26C25118.2°120.0°
O29C26C27122.5°120.0°
N41N37C38108.3°106.3°
N37N41C40109.1°106.8°
N37C38N39107.8°108.1°
N37C38H34126.1°126.0°
N41C40N39107.2°108.9°
N41C40H35126.4°125.5°
C26C25C24119.7°120.0°
C25C26C27119.2°120.1°
C26C25H24120.1°120.0°
C25C24C23120.1°120.0°
C25C24H23120.0°120.1°
C24C25H24120.1°120.0°
C26C27C28120.0°120.0°
C26C27H25120.0°120.0°
C40N39C38106.6°109.8°
N39C40H35126.4°125.5°
C01C02C03117.6°109.5°
C02C01H2109.5°109.5°
C02C01H3109.5°109.5°
C02C01H4109.5°109.5°
C01C02H5107.4°109.5°
C01C02H6107.4°109.5°
N39C38H34126.1°125.9°
C24C23C28118.2°120.0°
C24C23N20118.2°120.0°
C23C24H23120.0°120.0°
C27C28C23120.4°120.0°
C28C27H25120.0°120.0°
C27C28H26119.8°120.0°
C28C23N20120.7°120.0°
C23C28H26119.8°120.0°
C23N20C19118.2°111.0°
C23N20C21126.9°111.0°
C02C03N05109.8°109.5°
C02C03C04110.8°109.4°
C03C02H5107.4°109.5°
C03C02H6107.4°109.4°
C02C03H7107.7°109.4°
C19N20C21114.9°110.9°
N20C19C18113.8°109.4°
N20C19H17108.3°109.5°
N20C19H18108.4°109.5°
N20C21C22112.7°109.4°
N20C21H19108.7°109.4°
N20C21H20108.7°109.5°
C19C18N17110.4°109.3°
C19C18H15109.2°109.5°
C19C18H16109.2°109.5°
C18C19H17108.4°109.5°
C18C19H18108.3°109.5°
C18N17C22112.1°110.8°
C18N17C14102.3°110.9°
N17C18H15109.2°109.5°
N17C18H16109.2°109.5°
C13C12C11121.0°120.0°
C12C13C14119.5°120.0°
C13C12H1119.5°120.0°
C12C13H12120.3°120.0°
C12C11N08120.5°120.0°
C12C11C16118.7°120.0°
C11C12H1119.5°120.0°
C13C14N17120.7°120.0°
C13C14C15117.4°120.0°
C14C13H12120.2°120.0°
C21C22N17111.0°109.4°
C22C21H19108.6°109.5°
C22C21H20108.7°109.5°
C21C22H21109.1°109.5°
C21C22H22109.1°109.5°
C22N17C14122.3°111.0°
N17C22H21109.1°109.5°
N17C22H22109.1°109.4°
C09N10N05108.9°108.2°
N10C09N08108.2°108.8°
N10C09H11125.9°125.7°
N10N05C03125.9°126.3°
N10N05C06109.0°107.3°
C09N08C11125.7°125.8°
C09N08C06105.4°108.4°
N08C09H11125.9°125.6°
N05C03C04112.0°109.5°
C03N05C06124.9°126.4°
N05C03H7108.3°109.5°
C04C03H7108.1°109.5°
C03C04H8109.5°109.4°
C03C04H9109.5°109.5°
C03C04H10109.5°109.5°
N05C06O07123.6°126.3°
N05C06N08108.3°107.4°
N08C11C16119.5°120.0°
C11N08C06127.4°125.8°
C11C16C15119.2°120.0°
C11C16H14120.4°120.0°
O07C06N08126.0°126.4°
N17C14C15119.6°120.0°
C14C15C16118.6°120.0°
C14C15H13120.7°120.0°
C16C15H13120.7°120.0°
C15C16H14120.4°120.0°
H2C01H3109.5°109.4°
H2C01H4109.5°109.5°
H3C01H4109.5°109.5°
H5C02H6109.5°109.5°
H8C04H9109.5°109.5°
H8C04H10109.4°109.4°
H9C04H10109.5°109.5°
H15C18H16109.5°109.5°
H17C19H18109.5°109.5°
H19C21H20109.4°109.5°
H21C22H22109.5°109.5°
H27C30H28109.5°109.5°
H30C32H31109.5°110.9°
H32C36H33109.4°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CL8C45C44C46177.9°180.0°
CL8C45C44C43176.1°180.0°
CL8C45C46C47178.8°179.7°
CL8C45C44H364.0°0.0°
CL8C45C46H371.2°0.0°
C45C44C43H36180.0°180.0°
C44C45C46C473.2°0.3°
C45C44C43CL9171.6°180.0°
C45C44C43C4214.2°0.0°
C44C45C46H37176.8°179.9°
C46C45C44C436.0°0.0°
C45C46C47H37180.0°179.8°
C45C46C47C428.4°0.6°
C46C45C44H36173.9°180.0°
C45C46C47H38171.6°180.0°
C44C43CL9C42174.1°179.9°
C44C43C42C4719.2°0.3°
C44C43C42C34179.9°180.0°
C46C47C42C4316.5°0.6°
C46C47C42H38180.0°179.4°
C46C47C42C34177.4°179.7°
CL9C43C42C47166.7°179.8°
CL9C43C42C346.0°0.0°
CL9C43C44H368.5°0.1°
C43C42C47C34160.9°179.7°
C43C42C34O3357.9°65.4°
C43C42C34O35173.7°53.9°
C43C42C34C3666.8°174.3°
C42C43C44H36165.7°180.0°
C43C42C47H38163.5°180.0°
C47C42C34O33102.8°114.4°
C47C42C34O3513.0°126.3°
C47C42C34C36132.5°6.0°
C42C47C46H37171.6°179.7°
C42C34O33C32106.2°144.2°
C42C34O33O35118.1°119.8°
C42C34O33C36121.2°120.2°
C42C34O35C36120.7°120.2°
C42C34O35C31118.9°120.6°
C42C34C36N3749.0°62.6°
C42C34C36H3271.2°57.5°
C42C34C36H33169.1°177.4°
C34C42C47H382.6°0.3°
O33C32C31H30119.4°118.1°
O33C32C31H31119.3°118.2°
C32O33C34O3511.9°24.4°
C32O33C34C36132.6°95.6°
O33C32C31O3525.8°35.5°
O33C32C31C3091.7°154.0°
O33C32C31H29147.3°82.9°
O33C32H30H31121.9°123.9°
C34O33C32C3123.0°36.1°
O33C34O35C36125.4°119.9°
O33C34O35C314.9°0.7°
O33C34C36N37167.2°177.1°
C34O33C32H30142.3°154.3°
C34O33C32H3196.3°82.0°
O33C34C36H3247.0°62.8°
O33C34C36H3372.7°57.1°
C32C31O35C3418.6°21.4°
C32C31O35C30114.9°118.4°
C32C31O35H29120.6°118.5°
C32C31C30H29121.0°123.3°
C32C31C30O2934.7°179.9°
C32C31C30H2786.1°59.9°
C32C31C30H28155.4°60.2°
C31C32H30H31121.9°123.8°
C34O35C31C3096.3°139.8°
O35C34C36N3772.3°57.7°
C34O35C31H29139.2°97.2°
O35C34C36H32167.5°177.8°
O35C34C36H3347.8°62.3°
C36C34O35C31120.4°119.2°
C34C36N37H32120.1°120.0°
C34C36N37H33120.1°120.0°
C34C36N37N41128.7°54.2°
C34C36N37C3863.3°126.0°
C34C36H32H33119.7°119.9°
O35C31C30H29125.3°123.0°
O35C31C30O2979.0°66.4°
O35C31C30H27160.3°173.6°
O35C31C30H2841.8°53.5°
O35C31C32H30145.1°153.7°
O35C31C32H3193.6°82.6°
C31C30O29H27120.8°120.0°
C31C30O29H28120.7°120.0°
C31C30O29C26160.6°180.0°
C31C30H27H28117.6°120.0°
C30C31C32H3027.7°87.9°
C30C31C32H31149.0°35.8°
C36N37N41C38169.7°179.8°
C36N37N41C40179.5°179.8°
C36N37C38N39175.7°180.0°
N37C36H32H33119.7°120.0°
C36N37C38H344.3°0.0°
C30O29C26C25179.5°180.0°
C30O29C26C273.1°0.0°
O29C30H27H28117.7°120.0°
O29C30C31H29155.7°56.6°
O29C26C25C27177.4°180.0°
O29C26C25C24168.0°180.0°
O29C26C27C28175.9°180.0°
O29C26C25H2412.1°0.0°
O29C26C27H254.0°0.0°
C26O29C30H2739.8°60.0°
C26O29C30H2878.7°60.0°
N37N41C40N399.6°0.3°
N41N37C38N396.0°0.2°
N41N37C36H328.6°174.3°
N41N37C36H33111.1°65.8°
N41N37C38H34174.1°179.8°
N37N41C40H35170.4°179.9°
C38N37N41C409.8°0.3°
N37C38N39C400.1°0.0°
N37C38N39H34180.0°180.0°
C38N37C36H32176.6°6.0°
C38N37C36H3356.9°114.0°
N41C40N39H35180.0°179.7°
N41C40N39C385.8°0.2°
C26C25C24H24180.0°180.0°
C26C25C24C2317.7°0.0°
C25C26C27C281.4°0.0°
C26C25C24H23162.2°179.9°
C25C26C27H25178.7°179.9°
C24C25C26C279.4°0.0°
C25C24C23H23180.0°179.9°
C25C24C23C2817.7°0.0°
C25C24C23N20178.7°179.8°
C26C27C28H25180.0°180.0°
C26C27C28C231.7°0.0°
C27C26C25H24170.5°179.9°
C26C27C28H26178.3°179.7°
C40N39C38H34179.9°180.0°
C01C02C03H5121.2°120.0°
C01C02C03H6121.1°120.0°
C01C02C03N0576.7°65.0°
C01C02C03C04159.0°175.0°
C02C01H2H3120.0°120.0°
C02C01H2H4120.0°120.0°
C02C01H3H4120.0°120.0°
C01C02H5H6116.4°120.0°
C01C02C03H741.0°55.0°
C38N39C40H35174.2°179.9°
C24C23C28C279.6°0.0°
C24C23C28N20160.4°179.7°
C24C23N20C19154.3°0.3°
C24C23N20C2126.3°124.1°
C23C24C25H24162.2°180.0°
C24C23C28H26170.4°179.7°
C27C28C23H26180.0°179.7°
C27C28C23N20170.0°179.8°
C28C23N20C1945.3°180.0°
C28C23N20C21134.2°56.2°
C28C23C24H23162.2°179.9°
C23C28C27H25178.4°180.0°
C23N20C19C21179.5°123.9°
C23N20C19C18136.3°176.8°
C23N20C21C22135.0°176.8°
C23N20C19H1715.7°63.2°
C23N20C19H18103.1°56.8°
C23N20C21H19104.5°63.2°
C23N20C21H2014.5°56.8°
N20C23C24H231.3°0.3°
N20C23C28H2610.0°0.0°
C02C03N05N1064.6°60.4°
C02C03N05C04123.5°120.0°
C02C03N05H7117.3°120.0°
C02C03C04H7117.8°120.0°
C02C03N05C06121.1°120.0°
C03C02C01H2180.0°60.0°
C03C02C01H360.0°60.0°
C03C02C01H460.0°180.0°
C03C02H5H6116.3°120.0°
C02C03C04H8180.0°180.0°
C02C03C04H960.0°60.0°
C02C03C04H1060.0°60.0°
N20C19C18H17120.6°120.0°
N20C19C18H18120.6°120.0°
N20C19C18N1748.7°58.4°
C19N20C21C2245.6°59.3°
N20C19C18H1571.4°178.4°
N20C19C18H16168.9°61.6°
N20C19H17H18118.0°120.1°
C19N20C21H1974.9°60.7°
C19N20C21H20166.1°179.3°
C21N20C19C1844.2°59.3°
N20C21C22H19120.5°119.9°
N20C21C22H20120.5°120.0°
N20C21C22N1752.5°58.4°
C21N20C19H17164.8°60.7°
C21N20C19H1876.4°179.3°
N20C21H19H20118.5°120.0°
N20C21C22H21172.7°61.6°
N20C21C22H2267.8°178.3°
C19C18N17H15120.1°119.9°
C19C18N17H16120.1°120.0°
C19C18N17C2256.9°59.4°
C19C18N17C14170.3°176.8°
C19C18H15H16119.6°120.0°
C18C19H17H18118.0°120.0°
C18N17C14C13129.7°180.0°
C18N17C22C2159.2°59.4°
C18N17C22C14121.9°123.8°
C18N17C14C1567.9°0.0°
N17C18H15H16119.6°120.1°
N17C18C19H17169.4°61.6°
N17C18C19H1871.9°178.4°
C18N17C22H21179.4°60.6°
C18N17C22H2261.0°179.3°
C13C12C11H1180.0°179.7°
C12C13C14H12180.0°180.0°
C13C12C11N08169.9°180.0°
C13C12C11C163.0°0.0°
C12C13C14N17177.4°180.0°
C12C13C14C1519.8°0.0°
C11C12C13C143.9°0.0°
C12C11N08C09149.2°0.0°
C12C11N08C16166.8°180.0°
C12C11N08C0614.5°179.9°
C12C11C16C156.1°0.1°
C11C12C13H12176.1°180.0°
C12C11C16H14174.0°180.0°
C13C14N17C223.3°56.2°
C13C14N17C15162.4°180.0°
C13C14C15C1628.9°0.0°
C14C13C12H1176.1°179.7°
C13C14C15H13151.1°180.0°
C21C22N17H21120.2°120.0°
C21C22N17H22120.2°119.9°
C21C22N17C14178.9°176.8°
C22C21H19H20118.5°120.1°
C21C22H21H22119.3°120.0°
C22N17C14C15165.7°123.7°
C22N17C18H1563.2°179.3°
C22N17C18H16177.1°60.6°
N17C22C21H1968.0°61.5°
N17C22C21H20173.0°178.4°
N17C22H21H22119.3°120.0°
N10C09N08H11180.0°179.8°
C09N10N05C03179.1°179.9°
C09N10N05C064.0°0.4°
N10C09N08C11168.4°179.8°
N10C09N08C061.8°0.2°
N05N10C09N083.6°0.4°
N10N05C03C06174.3°179.6°
N10N05C03C0458.9°59.6°
N10N05C06O07167.5°179.8°
N10N05C06N082.9°0.3°
N10N05C03H7178.1°179.7°
N05N10C09H11176.4°179.8°
C09N08C06N050.6°0.1°
C09N08C11C06163.7°180.0°
C09N08C11C1644.1°180.0°
C09N08C06O07164.8°180.0°
N05C03C04H7119.3°120.0°
C03N05C06O0717.4°0.1°
C03N05C06N08177.9°180.0°
N05C03C02H5162.1°175.0°
N05C03C02H644.4°55.0°
N05C03C04H857.0°60.0°
N05C03C04H9177.0°180.0°
N05C03C04H1063.0°60.0°
C04C03N05C06115.4°120.0°
C04C03C02H537.9°55.0°
C04C03C02H679.8°65.0°
C03C04H8H9120.0°120.0°
C03C04H8H10120.0°120.0°
C03C04H9H10120.0°120.1°
N05C06N08C11165.7°180.0°
N05C06O07N08161.8°179.9°
C06N05C03H73.8°0.1°
C11N08C06O071.5°0.0°
N08C11C16C15160.9°180.0°
N08C11C12H110.1°0.3°
C11N08C09H1111.6°0.0°
N08C11C16H1419.1°0.0°
C11C16C15C1422.3°0.1°
C16C11N08C06152.2°0.0°
C11C16C15H14180.0°180.0°
C16C11C12H1177.0°179.7°
C11C16C15H13157.7°180.0°
N17C14C15C16168.1°179.9°
N17C14C13H122.6°0.1°
N17C14C15H1311.9°0.0°
C14N17C18H1569.6°56.9°
C14N17C18H1650.2°63.3°
C14N17C22H2158.7°63.2°
C14N17C22H2260.9°56.9°
C14C15C16H13180.0°179.9°
C15C14C13H12160.2°180.0°
C14C15C16H14157.8°180.0°
C06N08C09H11178.2°180.0°
H1C12C13H123.9°0.3°
H2C01H3H4120.0°120.0°
H2C01C02H558.9°60.0°
H2C01C02H658.8°179.9°
H3C01C02H561.2°NaN°
H3C01C02H6178.9°60.0°
H4C01C02H5178.9°60.0°
H4C01C02H661.1°60.0°
H5C02C03H780.2°65.0°
H6C02C03H7162.1°175.0°
H7C03C04H862.3°60.0°
H7C03C04H957.8°60.0°
H7C03C04H10177.7°180.0°
H8C04H9H10119.9°119.9°
H13C15C16H1422.3°0.1°
H15C18C19H1749.2°58.4°
H15C18C19H18168.0°61.6°
H16C18C19H1770.5°178.4°
H16C18C19H1848.3°58.4°
H19C21C22H2152.2°178.5°
H19C21C22H22171.7°58.4°
H20C21C22H2166.8°58.4°
H20C21C22H2252.7°61.7°
H23C24C25H2417.8°0.0°
H25C27C28H261.7°0.3°
H27C30C31H2934.9°63.4°
H28C30C31H2983.6°176.6°
H29C31C32H3093.3°35.2°
H29C31C32H3127.9°159.0°
H37C46C47H388.4°0.2°

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon