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1YF

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2QC2Qsing1.43Å1.44Å
O1FC1Fdoub1.21Å1.30Å
C1FN3Qsing1.35Å1.48Å
C2QC1Qsing1.53Å1.53Å
C2QC3Qsing1.53Å1.54Å
O3'C3'sing1.43Å1.42Å
O2BPBdoub1.48Å1.50Å
N3QC3Qsing1.46Å1.48Å
C1QO3Bsing1.43Å1.44Å
C1QO5Qsing1.43Å1.43Å
O1BPBsing1.61Å1.52Å
C2'C3'sing1.55Å1.51Å
C2'C1'sing1.54Å1.51Å
O3BPBsing1.61Å1.62Å
C3QC4Qsing1.53Å1.52Å
PBO3Asing1.61Å1.60Å
C3'C4'sing1.55Å1.52Å
O2C2doub1.22Å1.38Å
O5QC5Qsing1.43Å1.44Å
C4QC5Qsing1.53Å1.53Å
C4QO4Qsing1.43Å1.43Å
C2N3sing1.35Å1.35Å
C2N1sing1.35Å1.35Å
C1'N1sing1.47Å1.46Å
C1'O4'sing1.44Å1.40Å
N3C4sing1.35Å1.35Å
N1C6sing1.37Å1.35Å
C4'O4'sing1.44Å1.41Å
C4'C5'sing1.53Å1.52Å
O3APAsing1.61Å1.60Å
C5QC6Qsing1.53Å1.53Å
C4O4doub1.22Å1.36Å
C4C5sing1.42Å1.39Å
C6C5doub1.35Å1.39Å
C5C5Msing1.51Å1.53Å
C5'O5'sing1.43Å1.42Å
O5'PAsing1.61Å1.58Å
PAO1Adoub1.48Å1.51Å
PAO2Asing1.61Å1.50Å
C1FH2sing1.08Å1.08Å
C3QH3sing1.09Å1.10Å
C2QH4sing1.09Å1.10Å
O2QH5sing0.97Å0.95Å
C4QH6sing1.09Å1.10Å
O4QH7sing0.97Å0.95Å
C5QH8sing1.09Å1.10Å
C6QH9sing1.09Å1.10Å
C6QH10sing1.09Å1.10Å
C6QH11sing1.09Å1.10Å
C1QH12sing1.09Å1.10Å
O1BH13sing0.97Å0.95Å
O2AH14sing0.97Å0.95Å
C5'H15sing1.09Å1.10Å
C5'H16sing1.09Å1.10Å
C4'H17sing1.09Å1.10Å
C3'H18sing1.09Å1.10Å
O3'H19sing0.97Å0.95Å
C2'H20sing1.09Å1.10Å
C2'H21sing1.09Å1.10Å
C1'H22sing1.09Å1.10Å
C6H23sing1.08Å1.08Å
C5MH24sing1.09Å1.10Å
C5MH25sing1.09Å1.10Å
C5MH26sing1.09Å1.10Å
N3H27sing0.97Å1.00Å
N3QH1sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2QC2QC1Q113.1°109.5°
O2QC2QC3Q106.4°109.5°
O2QC2QH4109.0°109.6°
C2QO2QH5109.5°114.0°
O1FC1FN3Q130.1°120.0°
O1FC1FH2115.0°120.0°
C1FN3QC3Q127.0°119.9°
N3QC1FH2114.9°120.0°
C1FN3QH1116.5°120.0°
C1QC2QC3Q112.5°109.2°
C2QC1QO3B108.3°109.5°
C2QC1QO5Q116.1°109.4°
C1QC2QH4107.9°109.5°
C2QC1QH12107.1°109.5°
C2QC3QN3Q112.0°109.6°
C2QC3QC4Q108.1°109.0°
C2QC3QH3108.5°109.6°
C3QC2QH4107.8°109.5°
O3'C3'C2'113.0°110.9°
O3'C3'C4'112.7°110.9°
O3'C3'H18111.3°110.8°
C3'O3'H19109.5°114.0°
O2BPBO1B122.8°109.5°
O2BPBO3B109.9°109.4°
O2BPBO3A112.2°109.4°
N3QC3QC4Q110.3°109.5°
N3QC3QH3109.2°109.6°
C3QN3QH1116.5°120.0°
O3BC1QO5Q108.7°109.4°
C1QO3BPB118.4°123.0°
O3BC1QH12108.1°109.5°
C1QO5QC5Q113.2°114.1°
O5QC1QH12108.3°109.5°
O1BPBO3B98.6°109.5°
O1BPBO3A114.3°109.5°
PBO1BH13109.5°114.0°
C3'C2'C1'102.8°104.2°
C2'C3'C4'99.4°102.1°
C2'C3'H18109.9°110.9°
C3'C2'H20111.1°110.5°
C3'C2'H21111.1°110.5°
C2'C1'N1116.9°109.9°
C2'C1'O4'106.4°107.3°
C1'C2'H20111.1°110.5°
C1'C2'H21111.1°110.5°
C2'C1'H22108.2°109.8°
O3BPBO3A93.6°109.5°
C3QC4QC5Q113.5°109.2°
C3QC4QO4Q105.6°109.6°
C4QC3QH3108.7°109.5°
C3QC4QH6108.5°109.5°
PBO3APA138.9°134.0°
C3'C4'O4'104.0°103.5°
C3'C4'C5'114.9°110.6°
C3'C4'H17109.5°110.8°
C4'C3'H18109.9°110.9°
O2C2N3118.5°119.5°
O2C2N1123.1°119.5°
O5QC5QC4Q111.6°109.5°
O5QC5QC6Q110.4°109.5°
O5QC5QH8108.9°109.5°
C5QC4QO4Q111.2°109.6°
C4QC5QC6Q110.3°109.5°
C5QC4QH6108.4°109.5°
C4QC5QH8107.8°109.5°
O4QC4QH6109.6°109.5°
C4QO4QH7109.5°114.0°
N3C2N1118.3°120.9°
C2N3C4121.6°120.3°
C2N3H27119.2°119.8°
C2N1C1'117.3°119.7°
C2N1C6122.2°120.6°
N1C1'O4'106.7°109.9°
C1'N1C6120.3°119.7°
N1C1'H22108.8°109.9°
C1'O4'C4'110.0°107.0°
O4'C1'H22109.7°110.0°
N3C4O4119.1°120.3°
N3C4C5120.4°119.4°
C4N3H27119.2°119.9°
N1C6C5119.9°119.7°
N1C6H23120.0°120.2°
O4'C4'C5'107.8°110.6°
O4'C4'H17111.0°110.6°
C4'C5'O5'106.5°109.4°
C4'C5'H15110.2°109.5°
C4'C5'H16110.2°109.4°
C5'C4'H17109.5°110.6°
O3APAO5'105.5°109.5°
O3APAO1A107.1°109.5°
O3APAO2A106.8°109.5°
C6QC5QH8107.8°109.5°
C5QC6QH9109.5°109.5°
C5QC6QH10109.5°109.4°
C5QC6QH11109.5°109.5°
O4C4C5120.4°120.3°
C4C5C6117.2°119.1°
C4C5C5M119.5°120.4°
C6C5C5M123.2°120.5°
C5C6H23120.0°120.2°
C5C5MH24109.5°109.5°
C5C5MH25109.5°109.5°
C5C5MH26109.5°109.5°
C5'O5'PA117.9°123.0°
O5'C5'H15110.2°109.5°
O5'C5'H16110.2°109.5°
O5'PAO1A106.1°109.5°
O5'PAO2A114.3°109.4°
O1APAO2A116.3°109.5°
PAO2AH14109.5°114.0°
H9C6QH10109.4°109.5°
H9C6QH11109.4°109.5°
H10C6QH11109.5°109.5°
H15C5'H16109.5°109.5°
H20C2'H21109.5°110.6°
H24C5MH25109.4°109.5°
H24C5MH26109.5°109.5°
H25C5MH26109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2QC2QC1QC3Q120.6°119.9°
O2QC2QC1QH4120.6°120.2°
O2QC2QC3QH4116.8°120.2°
O2QC2QC3QN3Q66.0°63.3°
O2QC2QC1QO3B46.5°57.6°
O2QC2QC1QO5Q169.0°177.5°
O2QC2QC3QC4Q172.3°176.9°
O2QC2QC3QH354.6°57.0°
O2QC2QC1QH1269.9°62.5°
O1FC1FN3QH2180.0°179.7°
O1FC1FN3QC3Q168.3°0.0°
O1FC1FN3QH111.7°180.0°
C1FN3QC3QC2Q94.9°85.5°
C1FN3QC3QH1180.0°180.0°
C1FN3QC3QC4Q144.6°155.0°
C1FN3QC3QH325.3°34.9°
C1QC2QC3QH4118.8°119.9°
C1QC2QC3QN3Q169.6°176.8°
C2QC1QO3BO5Q127.0°119.9°
C2QC1QO3BH12115.7°120.1°
C2QC1QO5QH12120.5°120.0°
C2QC1QO3BPB154.8°150.0°
C1QC2QC3QC4Q47.9°57.0°
C2QC1QO5QC5Q50.3°61.1°
C1QC2QC3QH369.8°62.9°
C1QC2QO2QH5180.0°60.1°
C2QC3QN3QC4Q120.5°119.5°
C2QC3QN3QH3120.2°120.3°
C3QC2QC1QO3B74.1°62.3°
C3QC2QC1QO5Q48.4°57.6°
C2QC3QC4QH3117.6°120.0°
C2QC3QC4QC5Q53.2°56.9°
C2QC3QC4QO4Q175.2°176.9°
C3QC2QO2QH556.0°179.8°
C2QC3QC4QH667.4°62.9°
C3QC2QC1QH12169.5°177.6°
C2QC3QN3QH185.1°94.5°
O3'C3'C2'C4'119.7°118.2°
O3'C3'C2'H18125.1°123.6°
O3'C3'C2'C1'156.9°139.1°
O3'C3'C4'H18124.8°123.5°
O3'C3'C4'O4'160.4°155.3°
O3'C3'C4'C5'82.0°86.3°
O3'C3'C4'H1741.6°36.7°
O3'C3'C2'H2084.2°102.3°
O3'C3'C2'H2138.0°20.4°
O2BPBO3BC1Q22.8°55.1°
O2BPBO1BO3B120.5°120.0°
O2BPBO1BO3A141.7°120.0°
O2BPBO3BO3A115.1°120.0°
O2BPBO3APA80.2°45.1°
O2BPBO1BH130.0°180.0°
N3QC3QC4QH3119.6°120.2°
N3QC3QC4QC5Q175.9°176.8°
N3QC3QC4QO4Q62.1°63.2°
C3QN3QC1FH211.6°179.7°
N3QC3QC2QH450.8°56.9°
N3QC3QC4QH655.3°56.9°
O3BC1QO5QH12117.2°120.0°
C1QO3BPBO1B152.4°65.0°
C1QO3BPBO3A92.3°175.0°
O3BC1QO5QC5Q72.0°58.8°
O3BC1QC2QH4167.2°177.8°
O5QC1QO3BPB78.3°90.1°
C1QO5QC5QC4Q52.7°61.1°
C1QO5QC5QC6Q175.8°178.9°
O5QC1QC2QH470.3°62.3°
C1QO5QC5QH866.1°58.8°
O1BPBO3BO3A115.3°120.0°
O1BPBO3APA65.5°75.0°
C3'C2'C1'H20118.9°118.6°
C3'C2'C1'H21118.9°118.7°
C2'C3'C4'H18115.3°118.2°
C3'C2'C1'N196.9°121.4°
C3'C2'C1'O4'22.1°2.0°
C2'C3'C4'O4'40.4°37.0°
C2'C3'C4'C5'158.1°155.5°
C2'C3'C4'H1778.3°81.5°
C2'C3'O3'H19180.0°67.2°
C3'C2'H20H21123.1°122.6°
C3'C2'C1'H22140.0°117.5°
C1'C2'C3'C4'37.2°20.9°
C2'C1'N1C289.6°64.7°
C2'C1'N1O4'118.9°117.8°
C2'C1'N1H22122.8°121.0°
C2'C1'O4'H22116.8°119.4°
C2'C1'N1C695.4°115.0°
C2'C1'O4'C4'4.0°26.5°
C1'C2'C3'H1878.0°97.3°
C1'C2'H20H21123.1°122.6°
O3BPBO3APA166.6°165.0°
PBO3BC1QH1239.0°29.9°
O3BPBO1BH13120.5°60.0°
C3QC4QC5QO5Q56.5°57.6°
C3QC4QC5QO4Q118.9°120.0°
C3QC4QC5QH6120.6°119.9°
C3QC4QO4QH6116.6°120.2°
C3QC4QC5QC6Q179.6°177.6°
C4QC3QC2QH470.9°62.9°
C3QC4QO4QH7180.0°180.0°
C3QC4QC5QH863.0°62.4°
C4QC3QN3QH135.3°25.0°
PBO3APAO5'15.7°165.0°
PBO3APAO1A97.0°45.0°
PBO3APAO2A137.7°75.0°
O3APBO1BH13141.6°60.0°
C3'C4'O4'C1'28.6°40.1°
C3'C4'O4'C5'122.4°118.5°
C3'C4'O4'H17117.7°118.7°
C3'C4'C5'H17123.7°123.1°
C3'C4'C5'O5'57.1°179.5°
C3'C4'C5'H15176.6°60.4°
C3'C4'C5'H1662.4°59.5°
C4'C3'O3'H1968.3°180.0°
C4'C3'C2'H20156.2°139.5°
C4'C3'C2'H2181.7°97.8°
O2C2N3N1179.0°180.0°
O2C2N1C1'2.5°0.0°
O2C2N3C4178.5°180.0°
O2C2N1C6177.4°179.7°
O2C2N3H271.5°0.0°
O5QC5QC4QC6Q123.1°120.0°
O5QC5QC4QH8119.5°120.0°
O5QC5QC4QO4Q175.4°177.5°
O5QC5QC6QH8118.8°120.0°
O5QC5QC4QH664.1°62.3°
O5QC5QC6QH9180.0°60.0°
O5QC5QC6QH1060.0°60.1°
O5QC5QC6QH1160.0°180.0°
C5QO5QC1QH12170.8°178.9°
C5QC4QO4QH6119.8°120.1°
C4QC5QC6QH8117.4°120.0°
C5QC4QC3QH364.5°63.0°
C5QC4QO4QH756.5°60.3°
C4QC5QC6QH956.2°60.0°
C4QC5QC6QH1063.8°179.9°
C4QC5QC6QH11176.2°60.0°
O4QC4QC5QC6Q61.5°62.4°
O4QC4QC3QH357.5°56.9°
O4QC4QC5QH855.8°57.5°
N3C2N1C1'178.6°180.0°
C2N3C4H27180.0°180.0°
N3C2N1C63.6°0.3°
C2N3C4O4178.5°180.0°
C2N3C4C53.4°0.2°
C2N1C1'C6175.0°179.7°
C2N1C1'O4'151.5°53.1°
N1C2N3C42.5°0.0°
C2N1C6C55.6°0.3°
C2N1C1'H2233.2°174.3°
C2N1C6H23174.4°179.7°
N1C2N3H27177.5°180.0°
N1C1'O4'H22117.7°121.1°
N1C1'O4'C4'129.6°146.0°
C1'N1C6C5179.6°180.0°
N1C1'C2'H2022.0°2.8°
N1C1'C2'H21144.2°119.9°
C1'N1C6H230.4°0.0°
O4'C1'N1C623.6°127.2°
C1'O4'C4'C5'151.1°158.5°
C1'O4'C4'H1789.0°78.6°
O4'C1'C2'H20141.0°116.6°
O4'C1'C2'H2196.8°120.7°
N3C4O4C5178.1°179.7°
N3C4C5C65.1°0.2°
N3C4C5C5M179.4°179.8°
N1C6C5C46.2°0.0°
N1C6C5H23180.0°180.0°
N1C6C5C5M178.5°180.0°
C6N1C1'H22141.8°6.0°
O4'C4'C5'H17120.9°122.9°
O4'C4'C5'O5'58.3°66.5°
O4'C4'C5'H1561.2°53.6°
O4'C4'C5'H16177.8°173.5°
O4'C4'C3'H1874.8°81.2°
C4'O4'C1'H22112.8°92.9°
C4'C5'O5'H15119.5°120.0°
C4'C5'O5'H16119.5°119.9°
C4'C5'O5'PA167.6°180.0°
C4'C5'H15H16121.4°119.9°
C5'C4'C3'H1842.8°37.3°
O3APAO5'C5'79.4°175.0°
O3APAO5'O1A113.4°120.0°
O3APAO5'O2A117.0°120.0°
O3APAO1AO2A119.3°120.0°
O3APAO2AH14119.5°60.0°
C6QC5QC4QH659.0°57.7°
C5QC6QH9H10120.0°120.0°
C5QC6QH9H11120.0°120.0°
C5QC6QH10H11120.0°120.0°
O4C4C5C6176.8°180.0°
O4C4C5C5M1.3°0.0°
O4C4N3H271.5°0.0°
C4C5C6C5M175.4°180.0°
C4C5C6H23173.8°180.0°
C4C5C5MH24180.0°90.0°
C4C5C5MH2560.0°30.0°
C4C5C5MH2660.0°150.0°
C5C4N3H27176.6°179.7°
C6C5C5MH244.8°90.0°
C6C5C5MH25124.7°150.0°
C6C5C5MH26115.3°30.0°
C5MC5C6H231.5°0.0°
C5C5MH24H25120.0°120.0°
C5C5MH24H26120.0°120.0°
C5C5MH25H26120.0°120.0°
C5'O5'PAO1A167.2°55.0°
C5'O5'PAO2A37.6°65.0°
O5'C5'H15H16121.4°120.1°
O5'C5'C4'H17179.2°56.4°
O5'PAO1AO2A128.4°120.0°
O5'PAO2AH14124.3°60.0°
PAO5'C5'H1572.9°60.0°
PAO5'C5'H1648.1°60.0°
O1APAO2AH140.0°180.0°
H2C1FN3QH1168.3°0.3°
H3C3QC2QH4171.3°177.2°
H3C3QC4QH6175.0°177.1°
H3C3QN3QH1154.7°145.2°
H4C2QO2QH559.9°60.1°
H4C2QC1QH1250.8°57.7°
H6C4QO4QH763.3°59.8°
H6C4QC5QH8176.4°177.7°
H8C5QC6QH961.2°NaN°
H8C5QC6QH10178.8°60.0°
H8C5QC6QH1158.8°60.0°
H9C6QH10H11119.9°120.1°
H15C5'C4'H1759.7°176.4°
H16C5'C4'H1761.2°63.6°
H17C4'C3'H18166.4°160.3°
H18C3'O3'H1955.6°56.4°
H18C3'C2'H2041.0°21.3°
H18C3'C2'H21163.1°144.0°
H20C2'C1'H22101.1°123.8°
H21C2'C1'H2221.0°1.1°
H24C5MH25H26120.0°120.0°

222415

PDB entries from 2024-07-10

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