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1YC

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OAIPBSdoub1.48Å1.52Å
C5'C4'sing1.53Å1.53Å
C5'O5'sing1.43Å1.35Å
PBSOAHsing1.61Å1.57Å
PBSO5'sing1.61Å1.63Å
PBSOAZsing1.61Å1.61Å
O4'C4'sing1.43Å1.45Å
O4'C1'sing1.43Å1.40Å
C4'C3'sing1.54Å1.49Å
C8N7doub1.30Å1.34ÅAromatic
C8N9sing1.36Å1.35ÅAromatic
OAZCBMsing1.43Å1.45Å
N7C5sing1.35Å1.35ÅAromatic
N9C1'sing1.47Å1.44Å
N9C4sing1.37Å1.34ÅAromatic
C1'C2'sing1.54Å1.54Å
C3'O3'sing1.43Å1.43Å
C3'C2'sing1.55Å1.44Å
C5C4doub1.40Å1.36ÅAromatic
C5C6sing1.41Å1.35ÅAromatic
C4N3sing1.33Å1.35ÅAromatic
N6C6sing1.38Å1.35Å
C6N1doub1.33Å1.34ÅAromatic
NAACBAsing1.37Å1.33Å
N3C2doub1.32Å1.40ÅAromatic
C2'O2'sing1.42Å1.43Å
OAECBIsing1.43Å1.42Å
N1C2sing1.32Å1.38ÅAromatic
CBMCBIsing1.55Å1.49Å
CBMCBOsing1.54Å1.50Å
CBANASdoub1.31Å1.35Å
CBANATsing1.36Å1.38Å
NASCBGsing1.34Å1.36Å
CBICBKsing1.54Å1.49Å
NATCBCsing1.35Å1.38Å
CBGCBEdoub1.40Å1.34ÅAromatic
CBGNBQsing1.37Å1.33ÅAromatic
CBCCBEsing1.41Å1.36Å
CBCOACdoub1.22Å1.23Å
CBONBQsing1.46Å1.49Å
CBOOAXsing1.43Å1.41Å
O2'P2'sing1.61Å1.56Å
CBENARsing1.36Å1.34ÅAromatic
NBQCALsing1.36Å1.33ÅAromatic
CALNARdoub1.30Å1.34ÅAromatic
CBKOAXsing1.43Å1.47Å
CBKCANsing1.53Å1.54Å
OP3P2'sing1.61Å1.63Å
OP3CANsing1.43Å1.41Å
OP1P2'doub1.48Å1.53Å
P2'OP2sing1.61Å1.52Å
NATH1sing0.97Å1.00Å
NAAH2sing0.97Å1.00Å
NAAH3sing0.97Å1.00Å
CALH4sing1.08Å1.08Å
CBOH5sing1.09Å1.10Å
CBKH6sing1.09Å1.10Å
CANH7sing1.09Å1.10Å
CANH8sing1.09Å1.10Å
OP2H9sing0.97Å0.95Å
CBIH10sing1.09Å1.10Å
OAEH11sing0.97Å0.95Å
CBMH12sing1.09Å1.10Å
OAHH13sing0.97Å0.95Å
C5'H14sing1.09Å1.10Å
C5'H15sing1.09Å1.10Å
C4'H16sing1.09Å1.10Å
C3'H17sing1.09Å1.10Å
O3'H18sing0.97Å0.95Å
C2'H19sing1.09Å1.10Å
C1'H20sing1.09Å1.10Å
C8H21sing1.08Å1.08Å
C2H22sing1.08Å1.08Å
N6H23sing0.97Å1.00Å
N6H24sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OAIPBSOAH113.7°109.6°
OAIPBSO5'110.4°109.6°
OAIPBSOAZ111.5°109.5°
C4'C5'O5'108.8°108.9°
C5'C4'O4'111.6°109.8°
C5'C4'C3'107.8°108.8°
C4'C5'H14109.6°109.6°
C4'C5'H15109.6°109.6°
C5'C4'H16110.0°110.4°
C5'O5'PBS117.6°124.2°
O5'C5'H14109.6°109.5°
O5'C5'H15109.6°109.6°
OAHPBSO5'106.8°109.6°
OAHPBSOAZ104.1°109.5°
PBSOAHH13109.5°114.0°
O5'PBSOAZ110.0°109.0°
PBSOAZCBM119.3°121.8°
C4'O4'C1'108.1°112.1°
O4'C4'C3'105.6°107.5°
O4'C4'H16111.1°110.5°
O4'C1'N9103.6°109.9°
O4'C1'C2'105.8°107.3°
O4'C1'H20112.2°109.8°
C4'C3'O3'110.8°110.5°
C4'C3'C2'104.8°104.1°
C3'C4'H16110.6°109.8°
C4'C3'H17110.4°110.5°
N7C8N9108.9°110.0°
C8N7C5108.0°109.4°
N7C8H21125.6°125.0°
C8N9C1'127.4°126.3°
C8N9C4107.2°107.4°
N9C8H21125.6°125.0°
OAZCBMCBI110.3°110.3°
OAZCBMCBO110.7°111.2°
OAZCBMH12111.2°110.8°
N7C5C4107.1°107.1°
N7C5C6132.3°134.6°
C1'N9C4125.4°126.3°
N9C1'C2'113.4°109.9°
N9C1'H20111.5°110.0°
N9C4C5108.8°106.0°
N9C4N3129.9°134.9°
C1'C2'C3'100.2°104.2°
C1'C2'O2'114.1°111.2°
C1'C2'H19110.6°110.4°
C2'C1'H20110.1°109.9°
O3'C3'C2'108.2°110.5°
O3'C3'H17111.3°110.4°
C3'O3'H18109.5°114.0°
C3'C2'O2'107.0°110.4°
C2'C3'H17111.1°110.7°
C3'C2'H19112.0°109.7°
C4C5C6120.6°118.2°
C5C4N3121.3°119.0°
C5C6N6119.2°120.8°
C5C6N1120.5°118.4°
C4N3C2117.7°120.6°
N6C6N1120.2°120.8°
C6N6H23109.5°120.0°
C6N6H24109.5°120.0°
C6N1C2119.5°121.2°
NAACBANAS122.1°119.0°
NAACBANAT118.6°119.0°
CBANAAH2120.0°120.0°
CBANAAH3120.0°119.9°
N3C2N1120.4°122.4°
N3C2H22119.8°118.8°
C2'O2'P2'117.4°122.3°
O2'C2'H19112.3°110.8°
OAECBICBM110.2°110.7°
OAECBICBK108.7°110.5°
OAECBIH10112.3°110.5°
CBIOAEH11109.5°114.0°
N1C2H22119.8°118.8°
CBICBMCBO103.6°104.2°
CBMCBICBK102.5°104.2°
CBMCBIH10111.2°110.4°
CBICBMH12110.5°109.9°
CBMCBONBQ109.3°109.9°
CBMCBOOAX105.4°107.3°
CBMCBOH5109.8°110.0°
CBOCBMH12110.3°110.3°
NASCBANAT119.2°121.9°
CBANASCBG121.1°121.1°
CBANATCBC118.8°120.3°
CBANATH1120.6°119.8°
NASCBGCBE120.2°119.7°
NASCBGNBQ131.4°134.2°
CBICBKOAX105.7°107.5°
CBICBKCAN110.4°109.1°
CBICBKH6109.7°109.8°
CBKCBIH10111.4°110.5°
NATCBCCBE120.3°118.4°
NATCBCOAC116.6°120.8°
CBCNATH1120.6°119.9°
CBECBGNBQ108.3°106.1°
CBGCBECBC120.3°118.6°
CBGCBENAR107.3°107.3°
CBGNBQCBO126.4°126.2°
CBGNBQCAL108.4°107.5°
CBECBCOAC123.1°120.8°
CBCCBENAR132.4°134.1°
NBQCBOOAX110.8°109.9°
CBONBQCAL125.1°126.3°
NBQCBOH5110.1°109.9°
CBOOAXCBK109.6°112.2°
OAXCBOH5111.3°109.9°
O2'P2'OP3104.2°109.2°
O2'P2'OP1112.2°109.5°
O2'P2'OP2109.1°109.5°
CBENARCAL108.4°109.3°
NBQCALNAR107.6°109.8°
NBQCALH4126.2°125.1°
NARCALH4126.3°125.1°
OAXCBKCAN112.1°109.8°
OAXCBKH6109.9°110.3°
CBKCANOP3110.6°109.2°
CANCBKH6109.0°110.2°
CBKCANH7109.2°109.5°
CBKCANH8109.2°109.5°
P2'OP3CAN122.6°123.8°
OP3P2'OP1105.2°109.5°
OP3P2'OP2107.8°109.6°
OP3CANH7109.2°109.5°
OP3CANH8109.2°109.6°
OP1P2'OP2117.4°109.5°
P2'OP2H9109.5°114.0°
H2NAAH3120.0°120.0°
H7CANH8109.5°109.5°
H14C5'H15109.5°109.7°
H23N6H24109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OAIPBSO5'C5'28.0°59.3°
OAIPBSOAHO5'122.1°120.3°
OAIPBSOAHOAZ121.5°120.2°
OAIPBSO5'OAZ123.5°119.9°
OAIPBSOAZCBM155.2°120.0°
OAIPBSOAHH130.0°60.4°
C4'C5'O5'H14119.9°119.8°
C4'C5'O5'H15119.9°119.9°
C4'C5'O5'PBS175.0°154.8°
C5'C4'O4'C3'116.8°118.2°
C5'C4'O4'H16123.2°122.1°
C5'C4'O4'C1'112.8°111.4°
C5'C4'C3'H16120.3°121.0°
C5'C4'C3'O3'151.8°140.5°
C5'C4'C3'C2'91.6°100.8°
C4'C5'H14H15120.3°120.3°
C5'C4'C3'H1728.0°18.0°
C5'O5'PBSOAH152.1°61.0°
C5'O5'PBSOAZ95.5°179.2°
O5'C5'C4'O4'48.1°99.8°
O5'C5'C4'C3'67.4°17.5°
O5'C5'H14H15120.3°120.3°
O5'C5'C4'H16172.0°138.1°
OAHPBSO5'OAZ112.4°119.8°
OAHPBSOAZCBM81.8°119.8°
O5'PBSOAZCBM32.4°0.1°
O5'PBSOAHH13122.0°59.9°
PBSO5'C5'H1465.1°35.0°
PBSO5'C5'H1555.1°85.3°
PBSOAZCBMCBI113.4°96.8°
PBSOAZCBMCBO132.5°148.0°
PBSOAZCBMH129.5°25.0°
OAZPBSOAHH13121.6°179.4°
O4'C4'C3'H16120.3°120.2°
C4'O4'C1'N9139.4°127.0°
C4'O4'C1'C2'19.8°7.6°
O4'C4'C3'O3'88.8°100.6°
O4'C4'C3'C2'27.8°18.0°
O4'C4'C5'H1471.8°140.4°
O4'C4'C5'H15168.0°20.0°
O4'C4'C3'H17147.4°136.8°
C4'O4'C1'H20100.2°111.8°
C1'O4'C4'C3'4.0°6.8°
O4'C1'N9C855.7°23.8°
O4'C1'N9C2'114.2°117.8°
O4'C1'N9H20120.8°121.1°
O4'C1'N9C4125.4°156.4°
O4'C1'C2'H20121.4°119.4°
O4'C1'C2'C3'36.3°18.5°
O4'C1'C2'O2'150.2°137.4°
C1'O4'C4'H16123.9°126.5°
O4'C1'C2'H1982.1°99.2°
C4'C3'C2'C1'37.9°21.8°
C4'C3'O3'C2'114.4°114.7°
C4'C3'O3'H17123.3°122.5°
C4'C3'C2'H17119.2°118.7°
C4'C3'C2'O2'157.2°141.3°
C3'C4'C5'H14172.7°102.2°
C3'C4'C5'H1552.5°137.4°
C4'C3'O3'H18180.0°61.4°
C4'C3'C2'H1979.4°96.4°
N7C8N9H21180.0°180.0°
N7C8N9C1'178.5°180.0°
N7C8N9C40.5°0.2°
C8N7C5C40.3°0.3°
C8N7C5C6178.8°180.0°
N9C8N7C50.1°0.0°
C8N9C1'C4178.9°179.8°
C8N9C1'C2'58.5°94.0°
C8N9C4C50.8°0.4°
C8N9C4N3179.1°179.7°
C8N9C1'H20176.5°144.9°
OAZCBMCBIOAE39.1°21.7°
OAZCBMCBICBO118.5°119.4°
OAZCBMCBIH12123.3°122.4°
OAZCBMCBOH12123.5°123.3°
OAZCBMCBICBK154.8°140.5°
OAZCBMCBONBQ91.6°103.6°
OAZCBMCBOOAX149.3°137.0°
OAZCBMCBOH529.3°17.5°
OAZCBMCBIH1086.1°100.9°
N7C5C4N90.7°0.4°
N7C5C4C6178.7°179.8°
N7C5C4N3179.2°179.7°
N7C5C6N60.7°0.0°
N7C5C6N1179.7°179.2°
C5N7C8H21179.9°179.9°
N9C1'C2'H20125.7°121.2°
N9C1'C2'C3'149.2°138.0°
C1'N9C4C5178.3°179.8°
C1'N9C4N30.0°0.1°
N9C1'C2'O2'96.9°103.1°
N9C1'C2'H1930.8°20.2°
C1'N9C8H211.5°0.0°
C4N9C1'C2'120.3°85.8°
N9C4C5N3178.5°179.9°
N9C4C5C6179.4°179.8°
N9C4N3C2179.8°179.9°
C4N9C1'H204.6°35.4°
C4N9C8H21179.5°179.8°
C1'C2'C3'O3'80.3°96.9°
C1'C2'C3'O2'119.3°119.5°
C1'C2'C3'H19117.3°118.1°
C1'C2'O2'H19126.9°123.1°
C1'C2'O2'P2'116.0°148.9°
C1'C2'C3'H17157.2°140.4°
O3'C3'C2'H17122.5°122.7°
O3'C3'C2'O2'39.0°22.6°
O3'C3'C4'H1631.6°19.6°
O3'C3'C2'H19162.4°144.9°
C3'C2'O2'H19123.3°121.7°
C3'C2'O2'P2'134.1°95.9°
C2'C3'C4'H16148.1°138.2°
C2'C3'O3'H1865.6°176.1°
C3'C2'C1'H2085.2°100.9°
C4C5C6N6179.0°179.7°
C4C5C6N11.4°0.5°
C5C4N3C22.1°0.2°
C6C5C4N32.2°0.1°
C5C6N6N1179.6°179.2°
C5C6N1C20.7°0.7°
C5C6N6H23179.6°0.0°
C5C6N6H2460.4°180.0°
C4N3C2N11.3°0.0°
C4N3C2H22178.7°180.0°
N6C6N1C2179.8°179.9°
C6N6H23H24120.0°180.0°
C6N1C2N30.6°0.4°
C6N1C2H22179.4°179.6°
N1C6N6H230.0°179.2°
N1C6N6H24120.0°0.7°
NAACBANASNAT177.8°180.0°
NAACBANASCBG179.2°180.0°
NAACBANATCBC179.6°180.0°
NAACBANATH10.4°0.0°
CBANAAH2H3180.0°180.0°
N3C2N1H22180.0°180.0°
C2'O2'P2'OP351.5°4.6°
C2'O2'P2'OP161.8°124.5°
C2'O2'P2'OP2166.5°115.4°
O2'C2'C3'H1783.6°100.1°
O2'C2'C1'H2028.8°18.1°
OAECBICBMCBK115.6°118.8°
OAECBICBMH10125.3°122.6°
OAECBICBMCBO79.4°97.7°
OAECBICBKH10124.3°122.5°
OAECBICBKOAX88.1°101.6°
OAECBICBKCAN150.5°139.3°
OAECBICBKH630.4°18.4°
OAECBICBMH12162.5°144.2°
CBICBMCBOH12118.3°117.9°
CBMCBICBKH10119.0°118.6°
CBICBMCBONBQ150.2°137.6°
CBICBMCBOOAX31.1°18.1°
CBMCBICBKOAX28.6°17.3°
CBMCBICBKCAN92.8°101.8°
CBICBMCBOH588.9°101.4°
CBMCBICBKH6147.1°137.3°
CBMCBIOAEH11180.0°176.3°
CBOCBMCBICBK36.3°21.1°
CBMCBONBQCBG116.0°85.7°
CBMCBONBQOAX115.7°117.9°
CBMCBONBQH5120.8°121.1°
CBMCBOOAXH5119.0°119.5°
CBMCBONBQCAL59.2°94.3°
CBMCBOOAXCBK13.2°7.7°
CBOCBMCBIH10155.4°139.7°
NASCBANATCBC2.6°0.0°
CBANASCBGCBE0.3°0.0°
CBANASCBGNBQ178.3°180.0°
NASCBANATH1177.5°180.0°
NASCBANAAH20.0°0.0°
NASCBANAAH3180.0°180.0°
NATCBANASCBG1.4°0.0°
CBANATCBCH1180.0°180.0°
CBANATCBCCBE2.6°0.0°
CBANATCBCOAC179.1°179.7°
NATCBANAAH2177.8°180.0°
NATCBANAAH32.2°0.0°
NASCBGCBENBQ178.4°180.0°
NASCBGCBECBC0.3°0.0°
NASCBGNBQCBO4.4°0.0°
NASCBGCBENAR178.1°179.8°
NASCBGNBQCAL179.7°179.9°
CBICBKOAXCBO9.8°6.2°
CBICBKOAXCAN120.3°118.6°
CBICBKOAXH6118.3°119.7°
CBICBKCANH6120.6°120.7°
CBICBKCANOP362.0°20.7°
CBICBKCANH7177.8°140.6°
CBICBKCANH858.1°99.3°
CBKCBIOAEH1168.4°61.5°
CBKCBICBMH1281.9°97.1°
NATCBCCBECBG1.5°0.0°
NATCBCCBEOAC178.2°179.7°
NATCBCCBENAR176.5°179.7°
CBGCBECBCNAR178.0°179.8°
CBGCBECBCOAC179.7°179.7°
CBECBGNBQCBO177.4°180.0°
CBECBGNBQCAL1.6°0.0°
CBGCBENARCAL2.0°0.3°
NBQCBGCBECBC178.7°180.0°
CBGNBQCBOCAL175.2°180.0°
CBGNBQCBOOAX128.3°156.4°
NBQCBGCBENAR0.3°0.2°
CBGNBQCALNAR2.8°0.1°
CBGNBQCALH4177.2°179.8°
CBGNBQCBOH54.8°35.4°
CBCCBENARCAL179.8°179.9°
CBECBCNATH1177.4°180.0°
OACCBCCBENAR1.7°0.1°
OACCBCNATH10.9°0.3°
NBQCBOOAXH5122.8°121.0°
CBONBQCALNAR178.7°179.8°
NBQCBOOAXCBK131.4°127.2°
CBONBQCALH41.3°0.1°
NBQCBOCBMH1231.9°19.7°
OAXCBONBQCAL56.5°23.6°
CBOOAXCBKCAN110.5°112.4°
CBOOAXCBKH6128.1°125.9°
OAXCBOCBMH1287.2°99.7°
O2'P2'OP3OP1118.2°119.9°
O2'P2'OP3OP2115.8°119.9°
O2'P2'OP3CAN85.4°175.3°
O2'P2'OP1OP2127.4°120.1°
O2'P2'OP2H9128.9°179.7°
P2'O2'C2'H1910.9°25.8°
CBENARCALNBQ2.9°0.3°
CBENARCALH4177.1°179.9°
NBQCALNARH4180.0°179.7°
CALNBQCBOH5180.0°144.6°
OAXCBKCANH6121.9°121.8°
OAXCBKCANOP355.5°96.9°
CBKOAXCBOH5105.8°111.8°
OAXCBKCANH764.7°23.0°
OAXCBKCANH8175.6°143.1°
OAXCBKCBIH10147.6°135.9°
CBKCANOP3P2'169.2°150.0°
CBKCANOP3H7120.2°119.9°
CBKCANOP3H8120.2°119.9°
CBKCANH7H8119.5°120.1°
CANCBKCBIH1026.2°16.8°
OP3P2'OP1OP2119.8°120.2°
P2'OP3CANH770.6°90.1°
P2'OP3CANH849.0°30.1°
OP3P2'OP2H9118.5°60.0°
CANOP3P2'OP1156.4°64.8°
CANOP3P2'OP230.4°55.3°
OP3CANCBKH6177.4°141.3°
OP3CANH7H8119.5°120.2°
OP1P2'OP2H90.0°60.1°
H5CBOCBMH12152.8°140.8°
H6CBKCANH757.2°98.7°
H6CBKCANH862.4°21.4°
H6CBKCBIH1093.9°104.1°
H10CBIOAEH1155.3°61.1°
H10CBICBMH1237.2°21.6°
H14C5'C4'H1652.1°18.3°
H15C5'C4'H1668.1°102.1°
H16C4'C3'H1792.3°103.0°
H17C3'O3'H1856.7°61.1°
H17C3'C2'H1939.9°22.3°
H19C2'C1'H20156.5°141.4°

223532

PDB entries from 2024-08-07

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