1WA
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP3 | sing | 1.61Å | 1.57Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| OP2 | P | doub | 1.48Å | 1.45Å | |
| O5' | P | sing | 1.61Å | 1.66Å | |
| P | OP1 | sing | 1.61Å | 1.50Å | |
| C2 | N1 | doub | 1.33Å | 1.34Å | Aromatic |
| N1 | C6 | sing | 1.33Å | 1.36Å | Aromatic |
| N2 | C2 | sing | 1.37Å | 1.36Å | |
| C2 | N3 | sing | 1.36Å | 1.35Å | Aromatic |
| N2 | HN2 | sing | 0.97Å | 1.00Å | |
| N2 | HN2A | sing | 0.97Å | 1.00Å | |
| N3 | C4 | sing | 1.39Å | 1.35Å | Aromatic |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C4 | N5 | sing | 1.34Å | 1.35Å | Aromatic |
| C4 | N9 | doub | 1.32Å | 1.38Å | Aromatic |
| C6 | N5 | doub | 1.34Å | 1.33Å | Aromatic |
| N5 | C7 | sing | 1.35Å | 1.40Å | Aromatic |
| C6 | O6 | sing | 1.35Å | 1.30Å | |
| C7 | C8 | doub | 1.35Å | 1.25Å | Aromatic |
| C7 | H7 | sing | 1.08Å | 1.08Å | |
| N9 | C8 | sing | 1.34Å | 1.32Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N9 | C1' | sing | 1.46Å | 1.42Å | |
| C2' | C1' | sing | 1.55Å | 1.50Å | |
| C1' | O4' | sing | 1.44Å | 1.44Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | C3' | sing | 1.54Å | 1.56Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| O3' | C3' | sing | 1.43Å | 1.41Å | |
| C3' | C4' | sing | 1.55Å | 1.50Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | O4' | sing | 1.44Å | 1.39Å | |
| C4' | C5' | sing | 1.53Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O5' | C5' | sing | 1.43Å | 1.40Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| OP1 | HOP1 | sing | 0.97Å | 0.95Å | |
| O6 | HO6 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| OP3 | P | OP2 | 99.1° | 109.5° |
| OP3 | P | O5' | 97.5° | 109.5° |
| OP3 | P | OP1 | 110.8° | 109.5° |
| OP2 | P | O5' | 111.8° | 109.5° |
| OP2 | P | OP1 | 117.4° | 109.5° |
| O5' | P | OP1 | 116.8° | 109.4° |
| P | O5' | C5' | 125.4° | 123.0° |
| P | OP1 | HOP1 | 109.5° | 114.0° |
| C2 | N1 | C6 | 120.9° | 121.0° |
| N1 | C2 | N2 | 118.0° | 120.0° |
| N1 | C2 | N3 | 117.5° | 120.0° |
| N1 | C6 | N5 | 122.0° | 120.9° |
| N1 | C6 | O6 | 109.6° | 119.5° |
| N2 | C2 | N3 | 124.0° | 120.0° |
| C2 | N2 | HN2 | 109.5° | 120.0° |
| C2 | N2 | HN2A | 109.5° | 120.0° |
| C2 | N3 | C4 | 120.5° | 119.0° |
| C2 | N3 | HN3 | 119.7° | 120.5° |
| HN2 | N2 | HN2A | 109.5° | 120.0° |
| C4 | N3 | HN3 | 119.8° | 120.5° |
| N3 | C4 | N5 | 122.0° | 119.1° |
| N3 | C4 | N9 | 131.2° | 132.3° |
| N5 | C4 | N9 | 106.7° | 108.6° |
| C4 | N5 | C6 | 116.3° | 120.0° |
| C4 | N5 | C7 | 105.1° | 107.7° |
| C4 | N9 | C8 | 106.9° | 108.6° |
| C4 | N9 | C1' | 123.8° | 125.7° |
| C6 | N5 | C7 | 138.3° | 132.3° |
| N5 | C6 | O6 | 126.4° | 119.6° |
| N5 | C7 | C8 | 109.5° | 107.3° |
| N5 | C7 | H7 | 125.3° | 126.4° |
| C6 | O6 | HO6 | 109.5° | 114.0° |
| C8 | C7 | H7 | 125.2° | 126.4° |
| C7 | C8 | N9 | 111.1° | 107.8° |
| C7 | C8 | H8 | 124.4° | 126.2° |
| N9 | C8 | H8 | 124.4° | 126.1° |
| C8 | N9 | C1' | 128.5° | 125.7° |
| N9 | C1' | C2' | 105.9° | 110.4° |
| N9 | C1' | O4' | 106.6° | 110.4° |
| N9 | C1' | H1' | 114.1° | 110.3° |
| C2' | C1' | O4' | 103.1° | 104.8° |
| C2' | C1' | H1' | 112.6° | 110.5° |
| C1' | C2' | C3' | 104.9° | 104.1° |
| C1' | C2' | H2' | 110.6° | 110.5° |
| C1' | C2' | H2'A | 110.6° | 110.5° |
| O4' | C1' | H1' | 113.7° | 110.3° |
| C1' | O4' | C4' | 116.4° | 105.3° |
| C3' | C2' | H2' | 110.6° | 110.6° |
| C3' | C2' | H2'A | 110.6° | 110.5° |
| C2' | C3' | O3' | 113.1° | 110.5° |
| C2' | C3' | C4' | 107.2° | 104.1° |
| C2' | C3' | H3' | 107.7° | 110.5° |
| H2' | C2' | H2'A | 109.5° | 110.6° |
| O3' | C3' | C4' | 110.6° | 110.5° |
| O3' | C3' | H3' | 109.7° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 108.4° | 110.5° |
| C3' | C4' | O4' | 101.3° | 104.8° |
| C3' | C4' | C5' | 124.8° | 110.4° |
| C3' | C4' | H4' | 107.8° | 110.4° |
| O4' | C4' | C5' | 105.4° | 110.4° |
| O4' | C4' | H4' | 109.2° | 110.4° |
| C5' | C4' | H4' | 107.5° | 110.4° |
| C4' | C5' | O5' | 112.7° | 109.4° |
| C4' | C5' | H5' | 108.6° | 109.5° |
| C4' | C5' | H5'A | 108.7° | 109.5° |
| O5' | C5' | H5' | 108.7° | 109.4° |
| O5' | C5' | H5'A | 108.6° | 109.5° |
| H5' | C5' | H5'A | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP2 | O5' | 101.9° | 120.0° |
| OP3 | P | OP2 | OP1 | 119.2° | 120.0° |
| OP3 | P | O5' | OP1 | 117.9° | 120.0° |
| OP3 | P | O5' | C5' | 111.4° | 65.0° |
| OP3 | P | OP1 | HOP1 | 112.8° | 60.0° |
| HOP3 | OP3 | P | OP2 | 0.0° | 180.0° |
| HOP3 | OP3 | P | O5' | 113.6° | 60.0° |
| HOP3 | OP3 | P | OP1 | 124.0° | 60.0° |
| OP2 | P | O5' | OP1 | 139.1° | 120.0° |
| OP2 | P | O5' | C5' | 145.6° | 55.0° |
| OP2 | P | OP1 | HOP1 | 0.0° | 60.0° |
| P | O5' | C5' | C4' | 160.2° | 180.0° |
| P | O5' | C5' | H5' | 79.4° | 60.0° |
| P | O5' | C5' | H5'A | 39.6° | 60.0° |
| O5' | P | OP1 | HOP1 | 136.8° | 180.0° |
| OP1 | P | O5' | C5' | 6.5° | 175.0° |
| N1 | C2 | N2 | N3 | 171.6° | 180.0° |
| N1 | C2 | N2 | HN2 | 0.0° | 0.0° |
| N1 | C2 | N2 | HN2A | 120.0° | 180.0° |
| N1 | C2 | N3 | C4 | 7.5° | 0.0° |
| N1 | C2 | N3 | HN3 | 172.5° | 180.0° |
| C2 | N1 | C6 | N5 | 7.0° | 0.1° |
| C2 | N1 | C6 | O6 | 171.8° | 180.0° |
| C6 | N1 | C2 | N2 | 174.2° | 180.0° |
| C6 | N1 | C2 | N3 | 2.1° | 0.0° |
| N1 | C6 | N5 | C4 | 10.0° | 0.1° |
| N1 | C6 | N5 | O6 | 162.1° | 179.9° |
| N1 | C6 | N5 | C7 | 177.3° | 180.0° |
| N1 | C6 | O6 | HO6 | 0.0° | 0.0° |
| C2 | N2 | HN2 | HN2A | 120.0° | 180.0° |
| N2 | C2 | N3 | C4 | 179.1° | 179.9° |
| N2 | C2 | N3 | HN3 | 0.9° | 0.0° |
| N3 | C2 | N2 | HN2 | 171.6° | 180.0° |
| N3 | C2 | N2 | HN2A | 51.6° | 0.0° |
| C2 | N3 | C4 | HN3 | 180.0° | 180.0° |
| C2 | N3 | C4 | N5 | 4.3° | 0.0° |
| C2 | N3 | C4 | N9 | 171.3° | 179.9° |
| N3 | C4 | N5 | N9 | 176.6° | 179.9° |
| N3 | C4 | N5 | C6 | 4.4° | 0.1° |
| N3 | C4 | N5 | C7 | 179.4° | 180.0° |
| N3 | C4 | N9 | C8 | 176.8° | 180.0° |
| N3 | C4 | N9 | C1' | 5.8° | 0.1° |
| HN3 | N3 | C4 | N5 | 175.7° | 179.9° |
| HN3 | N3 | C4 | N9 | 8.7° | 0.0° |
| C4 | N5 | C6 | C7 | 172.7° | 179.9° |
| C4 | N5 | C6 | O6 | 172.1° | 180.0° |
| C4 | N5 | C7 | C8 | 0.6° | 0.1° |
| C4 | N5 | C7 | H7 | 179.4° | 180.0° |
| N5 | C4 | N9 | C8 | 7.1° | 0.1° |
| N5 | C4 | N9 | C1' | 178.1° | 180.0° |
| N9 | C4 | N5 | C6 | 179.0° | 180.0° |
| N9 | C4 | N5 | C7 | 4.0° | 0.1° |
| C4 | N9 | C8 | C7 | 7.7° | 0.1° |
| C4 | N9 | C8 | C1' | 170.5° | 179.9° |
| C4 | N9 | C8 | H8 | 172.3° | 180.0° |
| C4 | N9 | C1' | C2' | 94.0° | 118.2° |
| C4 | N9 | C1' | O4' | 156.7° | 126.4° |
| C4 | N9 | C1' | H1' | 30.4° | 4.2° |
| C6 | N5 | C7 | C8 | 172.7° | 179.9° |
| C6 | N5 | C7 | H7 | 7.4° | 0.1° |
| N5 | C6 | O6 | HO6 | 163.9° | 179.9° |
| C7 | N5 | C6 | O6 | 15.2° | 0.1° |
| N5 | C7 | C8 | H7 | 180.0° | 180.0° |
| N5 | C7 | C8 | N9 | 5.2° | 0.0° |
| N5 | C7 | C8 | H8 | 174.8° | 179.9° |
| C7 | C8 | N9 | H8 | 180.0° | 179.9° |
| C7 | C8 | N9 | C1' | 178.2° | 180.0° |
| H7 | C7 | C8 | N9 | 174.7° | 180.0° |
| H7 | C7 | C8 | H8 | 5.3° | 0.0° |
| C8 | N9 | C1' | C2' | 75.0° | 61.9° |
| C8 | N9 | C1' | O4' | 34.3° | 53.5° |
| C8 | N9 | C1' | H1' | 160.6° | 175.7° |
| H8 | C8 | N9 | C1' | 1.8° | 0.1° |
| N9 | C1' | C2' | O4' | 111.8° | 118.9° |
| N9 | C1' | C2' | H1' | 125.3° | 122.3° |
| N9 | C1' | O4' | H1' | 126.6° | 122.2° |
| N9 | C1' | C2' | C3' | 117.4° | 142.8° |
| N9 | C1' | C2' | H2' | 123.3° | 98.5° |
| N9 | C1' | C2' | H2'A | 1.8° | 24.2° |
| N9 | C1' | O4' | C4' | 133.9° | 159.3° |
| C2' | C1' | O4' | H1' | 122.2° | 118.9° |
| C1' | C2' | C3' | H2' | 119.3° | 118.6° |
| C1' | C2' | C3' | H2'A | 119.3° | 118.6° |
| C1' | C2' | H2' | H2'A | 122.1° | 122.6° |
| C1' | C2' | C3' | O3' | 132.4° | 118.7° |
| C1' | C2' | C3' | C4' | 10.2° | 0.0° |
| C1' | C2' | C3' | H3' | 106.3° | 118.6° |
| C2' | C1' | O4' | C4' | 22.6° | 40.5° |
| O4' | C1' | C2' | C3' | 5.7° | 23.9° |
| O4' | C1' | C2' | H2' | 125.0° | 142.7° |
| O4' | C1' | C2' | H2'A | 113.6° | 94.7° |
| C1' | O4' | C4' | C3' | 28.7° | 40.5° |
| C1' | O4' | C4' | C5' | 160.0° | 159.3° |
| C1' | O4' | C4' | H4' | 84.8° | 78.3° |
| H1' | C1' | C2' | C3' | 117.2° | 94.9° |
| H1' | C1' | C2' | H2' | 2.0° | 23.8° |
| H1' | C1' | C2' | H2'A | 123.5° | 146.5° |
| H1' | C1' | O4' | C4' | 99.6° | 78.4° |
| C3' | C2' | H2' | H2'A | 122.1° | 122.7° |
| C2' | C3' | O3' | C4' | 120.3° | 114.7° |
| C2' | C3' | O3' | H3' | 120.2° | 122.7° |
| C2' | C3' | C4' | H3' | 116.0° | 118.7° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.4° |
| C2' | C3' | C4' | O4' | 22.1° | 24.0° |
| C2' | C3' | C4' | C5' | 140.0° | 142.8° |
| C2' | C3' | C4' | H4' | 92.6° | 94.8° |
| H2' | C2' | C3' | O3' | 13.1° | 0.0° |
| H2' | C2' | C3' | C4' | 109.1° | 118.6° |
| H2' | C2' | C3' | H3' | 134.4° | 122.7° |
| H2'A | C2' | C3' | O3' | 108.4° | 122.7° |
| H2'A | C2' | C3' | C4' | 129.5° | 118.6° |
| H2'A | C2' | C3' | H3' | 13.0° | 0.0° |
| O3' | C3' | C4' | H3' | 120.2° | 122.6° |
| O3' | C3' | C4' | O4' | 145.8° | 142.7° |
| O3' | C3' | C4' | C5' | 96.2° | 98.5° |
| O3' | C3' | C4' | H4' | 31.2° | 23.9° |
| C4' | C3' | O3' | HO3' | 59.7° | 176.1° |
| C3' | C4' | O4' | C5' | 131.2° | 118.8° |
| C3' | C4' | O4' | H4' | 113.5° | 118.8° |
| C3' | C4' | C5' | H4' | 127.5° | 122.3° |
| C3' | C4' | C5' | O5' | 45.5° | 175.0° |
| C3' | C4' | C5' | H5' | 166.0° | 55.1° |
| C3' | C4' | C5' | H5'A | 75.0° | 65.0° |
| H3' | C3' | O3' | HO3' | 59.8° | 61.3° |
| H3' | C3' | C4' | O4' | 94.0° | 94.7° |
| H3' | C3' | C4' | C5' | 24.0° | 24.1° |
| H3' | C3' | C4' | H4' | 151.4° | 146.5° |
| O4' | C4' | C5' | H4' | 116.4° | 122.3° |
| O4' | C4' | C5' | O5' | 70.5° | 69.7° |
| O4' | C4' | C5' | H5' | 50.0° | 170.4° |
| O4' | C4' | C5' | H5'A | 169.0° | 50.4° |
| C4' | C5' | O5' | H5' | 120.5° | 119.9° |
| C4' | C5' | O5' | H5'A | 120.5° | 120.0° |
| C4' | C5' | H5' | H5'A | 118.5° | 120.0° |
| H4' | C4' | C5' | O5' | 173.1° | 52.6° |
| H4' | C4' | C5' | H5' | 66.4° | 67.3° |
| H4' | C4' | C5' | H5'A | 52.6° | 172.7° |
| O5' | C5' | H5' | H5'A | 118.5° | 120.0° |
