1W5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.44Å | |
| N4 | C4 | sing | 1.39Å | 1.34Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | C4' | sing | 1.54Å | 1.51Å | |
| C2' | C1' | sing | 1.54Å | 1.51Å | |
| N3 | C4 | doub | 1.32Å | 1.36Å | Aromatic |
| N3 | C2 | sing | 1.32Å | 1.41Å | Aromatic |
| O2 | C2 | sing | 1.36Å | 1.20Å | |
| C4 | C5 | sing | 1.39Å | 1.39Å | Aromatic |
| C2 | C1 | doub | 1.39Å | 1.45Å | Aromatic |
| ON1 | N | doub | 1.22Å | 1.21Å | |
| C5 | N | sing | 1.48Å | 1.42Å | |
| C5 | C6 | doub | 1.38Å | 1.43Å | Aromatic |
| C1 | C6 | sing | 1.39Å | 1.34Å | Aromatic |
| C1 | C1' | sing | 1.51Å | 1.44Å | |
| N | ON2 | sing | 1.22Å | 1.19Å | |
| OP2 | P | doub | 1.48Å | 1.50Å | |
| C1' | O4' | sing | 1.44Å | 1.46Å | |
| O5' | P | sing | 1.61Å | 1.61Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C4' | C5' | sing | 1.53Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.46Å | |
| P | OP1 | sing | 1.61Å | 1.47Å | |
| P | OP3 | sing | 1.61Å | 1.59Å | |
| N4 | H1 | sing | 0.97Å | 1.00Å | |
| N4 | H2 | sing | 0.97Å | 1.00Å | |
| C6 | H4 | sing | 1.08Å | 1.08Å | |
| C1' | H5 | sing | 1.09Å | 1.10Å | |
| C2' | H6 | sing | 1.09Å | 1.10Å | |
| C2' | H7 | sing | 1.09Å | 1.10Å | |
| C3' | H8 | sing | 1.09Å | 1.10Å | |
| O3' | H9 | sing | 0.97Å | 0.95Å | |
| C4' | H10 | sing | 1.09Å | 1.10Å | |
| C5' | H11 | sing | 1.09Å | 1.10Å | |
| C5' | H12 | sing | 1.09Å | 1.10Å | |
| OP1 | HOP1 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| O2 | H15 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C2' | 110.7° | 110.5° |
| O3' | C3' | C4' | 113.0° | 110.5° |
| O3' | C3' | H8 | 111.9° | 110.6° |
| C3' | O3' | H9 | 109.5° | 114.0° |
| N4 | C4 | N3 | 116.4° | 119.6° |
| N4 | C4 | C5 | 126.8° | 119.7° |
| C4 | N4 | H1 | 109.5° | 120.0° |
| C4 | N4 | H2 | 109.5° | 120.0° |
| C2' | C3' | C4' | 99.3° | 104.1° |
| C3' | C2' | C1' | 110.3° | 104.0° |
| C3' | C2' | H6 | 109.2° | 110.5° |
| C3' | C2' | H7 | 109.3° | 110.6° |
| C2' | C3' | H8 | 110.5° | 110.4° |
| C3' | C4' | C5' | 108.6° | 110.4° |
| C3' | C4' | O4' | 105.5° | 104.8° |
| C4' | C3' | H8 | 110.9° | 110.5° |
| C3' | C4' | H10 | 110.1° | 110.4° |
| C2' | C1' | C1 | 107.4° | 110.4° |
| C2' | C1' | O4' | 101.6° | 104.8° |
| C2' | C1' | H5 | 109.8° | 110.5° |
| C1' | C2' | H6 | 109.2° | 110.5° |
| C1' | C2' | H7 | 109.2° | 110.5° |
| C4 | N3 | C2 | 127.3° | 121.5° |
| N3 | C4 | C5 | 116.8° | 120.7° |
| N3 | C2 | O2 | 118.6° | 119.7° |
| N3 | C2 | C1 | 114.3° | 120.7° |
| O2 | C2 | C1 | 127.1° | 119.6° |
| C2 | O2 | H15 | 109.5° | 114.0° |
| C4 | C5 | N | 122.8° | 120.4° |
| C4 | C5 | C6 | 118.9° | 119.3° |
| C2 | C1 | C6 | 119.6° | 119.3° |
| C2 | C1 | C1' | 116.0° | 120.4° |
| ON1 | N | C5 | 119.6° | 120.0° |
| ON1 | N | ON2 | 122.8° | 120.0° |
| N | C5 | C6 | 118.3° | 120.4° |
| C5 | N | ON2 | 117.6° | 119.9° |
| C5 | C6 | C1 | 123.3° | 118.6° |
| C5 | C6 | H4 | 118.4° | 120.7° |
| C6 | C1 | C1' | 124.4° | 120.4° |
| C1 | C6 | H4 | 118.4° | 120.7° |
| C1 | C1' | O4' | 116.0° | 110.3° |
| C1 | C1' | H5 | 110.9° | 110.3° |
| OP2 | P | O5' | 115.3° | 109.5° |
| OP2 | P | OP1 | 113.7° | 109.5° |
| OP2 | P | OP3 | 112.8° | 109.5° |
| C1' | O4' | C4' | 112.0° | 105.2° |
| O4' | C1' | H5 | 110.6° | 110.3° |
| P | O5' | C5' | 117.6° | 122.9° |
| O5' | P | OP1 | 110.8° | 109.5° |
| O5' | P | OP3 | 111.5° | 109.4° |
| O5' | C5' | C4' | 102.9° | 109.4° |
| O5' | C5' | H11 | 111.1° | 109.5° |
| O5' | C5' | H12 | 111.1° | 109.5° |
| C5' | C4' | O4' | 111.6° | 110.3° |
| C5' | C4' | H10 | 110.0° | 110.3° |
| C4' | C5' | H11 | 111.1° | 109.5° |
| C4' | C5' | H12 | 111.1° | 109.5° |
| O4' | C4' | H10 | 110.9° | 110.4° |
| OP1 | P | OP3 | 90.2° | 109.5° |
| P | OP1 | HOP1 | 109.5° | 114.1° |
| P | OP3 | HOP3 | 109.5° | 113.9° |
| H1 | N4 | H2 | 109.5° | 120.0° |
| H6 | C2' | H7 | 109.5° | 110.6° |
| H11 | C5' | H12 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C2' | C4' | 119.0° | 118.7° |
| O3' | C3' | C2' | H8 | 124.5° | 122.7° |
| O3' | C3' | C4' | H8 | 126.5° | 122.7° |
| O3' | C3' | C2' | C1' | 148.1° | 118.7° |
| O3' | C3' | C4' | C5' | 90.2° | 98.5° |
| O3' | C3' | C4' | O4' | 150.0° | 142.6° |
| O3' | C3' | C2' | H6 | 91.8° | 0.1° |
| O3' | C3' | C2' | H7 | 28.0° | 122.7° |
| O3' | C3' | C4' | H10 | 30.3° | 23.7° |
| N4 | C4 | N3 | C5 | 179.3° | 180.0° |
| N4 | C4 | N3 | C2 | 179.1° | 180.0° |
| N4 | C4 | C5 | N | 1.2° | 0.1° |
| N4 | C4 | C5 | C6 | 179.1° | 180.0° |
| C4 | N4 | H1 | H2 | 120.0° | 179.9° |
| C2' | C3' | C4' | H8 | 116.2° | 118.6° |
| C3' | C2' | C1' | H6 | 120.1° | 118.6° |
| C3' | C2' | C1' | H7 | 120.1° | 118.8° |
| C3' | C2' | C1' | C1 | 108.4° | 142.8° |
| C3' | C2' | C1' | O4' | 13.8° | 24.0° |
| C2' | C3' | C4' | C5' | 152.5° | 142.8° |
| C2' | C3' | C4' | O4' | 32.7° | 23.9° |
| C3' | C2' | C1' | H5 | 130.9° | 94.9° |
| C3' | C2' | H6 | H7 | 119.6° | 122.8° |
| C2' | C3' | O3' | H9 | 180.0° | 61.4° |
| C2' | C3' | C4' | H10 | 87.0° | 95.0° |
| C4' | C3' | C2' | C1' | 29.1° | 0.0° |
| C3' | C4' | O4' | C1' | 27.6° | 40.5° |
| C3' | C4' | C5' | O5' | 60.5° | 175.0° |
| C3' | C4' | C5' | O4' | 115.9° | 115.4° |
| C3' | C4' | C5' | H10 | 120.6° | 122.3° |
| C3' | C4' | O4' | H10 | 119.2° | 118.9° |
| C4' | C3' | C2' | H6 | 149.2° | 118.6° |
| C4' | C3' | C2' | H7 | 91.0° | 118.6° |
| C4' | C3' | O3' | H9 | 69.7° | 176.1° |
| C3' | C4' | C5' | H11 | 58.5° | 55.0° |
| C3' | C4' | C5' | H12 | 179.4° | 65.0° |
| C2' | C1' | C1 | C2 | 82.6° | 88.4° |
| C2' | C1' | C1 | C6 | 99.3° | 91.8° |
| C2' | C1' | C1 | O4' | 112.8° | 115.4° |
| C2' | C1' | C1 | H5 | 120.0° | 122.4° |
| C2' | C1' | O4' | H5 | 116.5° | 119.0° |
| C2' | C1' | O4' | C4' | 8.4° | 40.5° |
| C1' | C2' | H6 | H7 | 119.6° | 122.7° |
| C1' | C2' | C3' | H8 | 87.4° | 118.7° |
| C4 | N3 | C2 | O2 | 179.6° | 179.9° |
| C4 | N3 | C2 | C1 | 0.3° | 0.1° |
| N3 | C4 | C5 | N | 179.6° | 179.9° |
| N3 | C4 | C5 | C6 | 0.1° | 0.0° |
| N3 | C4 | N4 | H1 | 0.0° | 8.6° |
| N3 | C4 | N4 | H2 | 120.0° | 171.4° |
| N3 | C2 | O2 | C1 | 179.2° | 180.0° |
| C2 | N3 | C4 | C5 | 0.2° | 0.1° |
| N3 | C2 | C1 | C6 | 0.3° | 0.1° |
| N3 | C2 | C1 | C1' | 178.5° | 179.7° |
| N3 | C2 | O2 | H15 | 0.0° | 90.0° |
| O2 | C2 | C1 | C6 | 179.5° | 180.0° |
| O2 | C2 | C1 | C1' | 2.3° | 0.3° |
| C4 | C5 | N | ON1 | 0.5° | 37.9° |
| C4 | C5 | N | C6 | 179.7° | 179.9° |
| C4 | C5 | C6 | C1 | 0.1° | 0.0° |
| C4 | C5 | N | ON2 | 178.5° | 142.3° |
| C5 | C4 | N4 | H1 | 179.2° | 171.4° |
| C5 | C4 | N4 | H2 | 59.2° | 8.6° |
| C4 | C5 | C6 | H4 | 179.9° | 179.7° |
| C2 | C1 | C6 | C5 | 0.2° | 0.0° |
| C2 | C1 | C6 | C1' | 178.0° | 179.8° |
| C2 | C1 | C1' | O4' | 164.6° | 156.2° |
| C2 | C1 | C6 | H4 | 179.8° | 179.7° |
| C2 | C1 | C1' | H5 | 37.4° | 34.0° |
| C1 | C2 | O2 | H15 | 179.2° | 90.0° |
| ON1 | N | C5 | ON2 | 178.1° | 179.8° |
| ON1 | N | C5 | C6 | 179.2° | 142.0° |
| N | C5 | C6 | C1 | 179.6° | 180.0° |
| N | C5 | C6 | H4 | 0.4° | 0.2° |
| C5 | C6 | C1 | H4 | 180.0° | 179.7° |
| C5 | C6 | C1 | C1' | 178.3° | 179.8° |
| C6 | C5 | N | ON2 | 1.1° | 37.8° |
| C6 | C1 | C1' | O4' | 13.5° | 23.6° |
| C6 | C1 | C1' | H5 | 140.7° | 145.8° |
| C1 | C1' | O4' | H5 | 127.4° | 122.1° |
| C1 | C1' | O4' | C4' | 124.5° | 159.3° |
| C1' | C1 | C6 | H4 | 1.8° | 0.1° |
| C1 | C1' | C2' | H6 | 11.7° | 98.6° |
| C1 | C1' | C2' | H7 | 131.4° | 24.1° |
| OP2 | P | O5' | OP1 | 130.9° | 120.1° |
| OP2 | P | O5' | OP3 | 130.2° | 120.0° |
| OP2 | P | O5' | C5' | 165.7° | 55.1° |
| OP2 | P | OP1 | OP3 | 115.1° | 120.0° |
| OP2 | P | OP1 | HOP1 | 0.0° | 180.0° |
| OP2 | P | OP3 | HOP3 | 0.0° | 60.0° |
| C1' | O4' | C4' | C5' | 145.4° | 159.3° |
| O4' | C1' | C2' | H6 | 133.9° | 142.6° |
| O4' | C1' | C2' | H7 | 106.3° | 94.7° |
| C1' | O4' | C4' | H10 | 91.6° | 78.4° |
| P | O5' | C5' | C4' | 167.6° | 180.0° |
| O5' | P | OP1 | OP3 | 113.1° | 119.9° |
| P | O5' | C5' | H11 | 73.4° | 60.0° |
| P | O5' | C5' | H12 | 48.7° | 60.0° |
| O5' | P | OP1 | HOP1 | 131.8° | 60.0° |
| O5' | P | OP3 | HOP3 | 131.5° | 179.9° |
| O5' | C5' | C4' | H11 | 119.0° | 120.0° |
| O5' | C5' | C4' | H12 | 119.0° | 120.0° |
| O5' | C5' | C4' | O4' | 55.4° | 69.6° |
| C5' | O5' | P | OP1 | 34.8° | 65.0° |
| C5' | O5' | P | OP3 | 64.1° | 175.0° |
| O5' | C5' | C4' | H10 | 178.9° | 52.7° |
| O5' | C5' | H11 | H12 | 123.0° | 120.0° |
| C5' | C4' | O4' | H10 | 123.0° | 122.2° |
| C5' | C4' | C3' | H8 | 36.3° | 24.2° |
| C4' | C5' | H11 | H12 | 123.0° | 120.0° |
| C4' | O4' | C1' | H5 | 108.1° | 78.5° |
| O4' | C4' | C3' | H8 | 83.5° | 94.6° |
| O4' | C4' | C5' | H11 | 174.4° | 170.4° |
| O4' | C4' | C5' | H12 | 63.6° | 50.4° |
| OP1 | P | OP3 | HOP3 | 116.0° | 60.1° |
| OP3 | P | OP1 | HOP1 | 115.1° | 59.9° |
| H5 | C1' | C2' | H6 | 109.0° | 23.7° |
| H5 | C1' | C2' | H7 | 10.8° | 146.4° |
| H6 | C2' | C3' | H8 | 32.7° | 122.8° |
| H7 | C2' | C3' | H8 | 152.5° | 0.0° |
| H8 | C3' | O3' | H9 | 56.3° | 61.2° |
| H8 | C3' | C4' | H10 | 156.8° | 146.5° |
| H10 | C4' | C5' | H11 | 62.1° | 67.3° |
| H10 | C4' | C5' | H12 | 60.0° | 172.7° |
