Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1TP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1'C2'doub1.32Å1.41ÅAromatic
N1'C6'sing1.33Å1.42ÅAromatic
C2'C2Asing1.51Å1.50Å
C2'N3'sing1.32Å1.30ÅAromatic
C2AH2A1sing1.09Å1.10Å
C2AH2A2sing1.09Å1.10Å
C2AH2A3sing1.09Å1.10Å
N3'C4'doub1.33Å1.42ÅAromatic
C4'N4'sing1.38Å1.34Å
C4'C5'sing1.40Å1.44ÅAromatic
N4'H4'1sing0.97Å1.00Å
N4'H4'2sing0.97Å1.00Å
C5'C6'doub1.38Å1.39ÅAromatic
C5'C7'sing1.51Å1.48Å
C6'H6'sing1.08Å1.08Å
C7'N3sing1.47Å1.51Å
C7'H7'1sing1.09Å1.10Å
C7'H7'2sing1.09Å1.10Å
N3C2sing1.48Å1.62Å
N3C4sing1.46Å1.34Å
C2S1sing1.85Å1.68Å
C2C15sing1.53Å2.09Å
C2H2sing1.09Å1.10Å
S1C5sing1.85Å1.83Å
C5C4sing1.55Å1.44Å
C5C5Asing1.53Å1.62Å
C5H5sing1.09Å1.10Å
C4C4Asing1.53Å1.63Å
C4H4sing1.09Å1.10Å
C4AH4A1sing1.09Å1.10Å
C4AH4A2sing1.09Å1.10Å
C4AH4A3sing1.09Å1.10Å
C5AC5Bsing1.53Å1.44Å
C5AH5A1sing1.09Å1.10Å
C5AH5A2sing1.09Å1.10Å
C5BO5Gsing1.43Å1.37Å
C5BH5B1sing1.09Å1.10Å
C5BH5B2sing1.09Å1.10Å
O5GP1sing1.61Å1.55Å
P1O11sing1.46Å1.50Å
P1O12doub1.61Å1.46Å
P1O13sing1.61Å1.45Å
O11P2sing1.61Å1.62Å
O13HO13sing0.97Å0.95Å
P2O21doub1.48Å1.51Å
P2O22sing1.61Å1.43Å
P2O23sing1.61Å1.61Å
O22H6B1sing0.97Å0.95Å
O23HO23sing0.97Å0.95Å
C15O25sing1.43Å1.60Å
C15C35sing1.53Å1.66Å
C15C25sing1.51Å1.79Å
O25H25sing0.97Å0.95Å
C35H351sing1.09Å1.10Å
C35H352sing1.09Å1.10Å
C35H353sing1.09Å1.10Å
C25O35doub1.21Å1.24Å
C25O45sing1.34Å1.50Å
O45H45sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2'N1'C6'120.2°121.0°
N1'C2'C2A124.1°119.1°
N1'C2'N3'117.6°121.9°
N1'C6'C5'123.4°119.2°
N1'C6'H6'118.3°120.4°
C2AC2'N3'118.3°119.1°
C2'C2AH2A1109.4°109.5°
C2'C2AH2A2109.5°109.5°
C2'C2AH2A3109.5°109.5°
C2'N3'C4'124.6°120.7°
H2A1C2AH2A2109.5°109.5°
H2A1C2AH2A3109.5°109.4°
H2A2C2AH2A3109.5°109.4°
N3'C4'N4'114.0°120.5°
N3'C4'C5'120.4°118.9°
N4'C4'C5'125.6°120.5°
C4'N4'H4'1109.4°120.0°
C4'N4'H4'2109.5°120.0°
C4'C5'C6'113.8°118.3°
C4'C5'C7'124.9°120.9°
H4'1N4'H4'2109.5°120.0°
C6'C5'C7'121.3°120.8°
C5'C6'H6'118.3°120.4°
C5'C7'N3108.2°109.5°
C5'C7'H7'1110.2°109.5°
C5'C7'H7'2109.9°109.5°
N3C7'H7'1110.2°109.4°
N3C7'H7'2109.9°109.5°
C7'N3C2112.0°106.7°
C7'N3C4122.4°106.7°
H7'1C7'H7'2108.5°109.5°
C2N3C4112.6°116.6°
N3C2S1104.7°101.2°
N3C2C15127.2°111.2°
N3C2H2106.9°111.0°
N3C4C5106.7°114.2°
N3C4C4A126.1°108.5°
N3C4H4127.8°108.5°
S1C2C15121.6°111.0°
S1C2H2117.2°111.0°
C2S1C592.2°96.5°
C15C2H274.8°111.0°
C2C15O25103.5°109.5°
C2C15C35116.8°109.5°
C2C15C25108.4°109.5°
S1C5C4104.6°100.0°
S1C5C5A104.6°111.4°
S1C5H5116.1°111.3°
C4C5C5A111.3°111.3°
C4C5H5110.1°111.3°
C5C4C4A127.1°108.5°
C5C4H4123.1°108.5°
C5AC5H5110.0°111.1°
C5C5AC5B108.4°109.5°
C5C5AH5A1110.1°109.4°
C5C5AH5A2109.9°109.5°
C4AC4H416.6°108.5°
C4C4AH4A1109.5°109.4°
C4C4AH4A2109.5°109.4°
C4C4AH4A3109.5°109.4°
H4A1C4AH4A2109.5°109.5°
H4A1C4AH4A3109.5°109.5°
H4A2C4AH4A3109.4°109.5°
C5BC5AH5A1110.1°109.5°
C5BC5AH5A2109.8°109.5°
C5AC5BO5G122.2°109.5°
C5AC5BH5B1102.5°109.4°
C5AC5BH5B2105.4°109.5°
H5A1C5AH5A2108.6°109.5°
O5GC5BH5B1102.5°109.5°
O5GC5BH5B2105.4°109.5°
C5BO5GP1130.9°106.8°
H5B1C5BH5B2120.1°109.4°
O5GP1O11102.5°109.4°
O5GP1O12109.8°109.5°
O5GP1O13104.6°109.5°
O11P1O12114.2°109.5°
O11P1O13105.6°109.5°
P1O11P2132.3°106.8°
O12P1O13118.5°109.5°
P1O13HO13109.5°106.8°
O11P2O21103.9°109.5°
O11P2O22109.6°109.5°
O11P2O23105.4°109.5°
O21P2O22117.3°109.4°
O21P2O23112.8°109.5°
O22P2O23107.1°109.5°
P2O22H6B1109.5°106.8°
P2O23HO23109.5°106.8°
O25C15C35113.0°109.5°
O25C15C25109.9°109.5°
C15O25H25109.5°106.8°
C35C15C25105.2°109.5°
C15C35H351109.4°109.5°
C15C35H352109.5°109.5°
C15C35H353109.5°109.5°
C15C25O35113.5°120.0°
C15C25O45120.8°120.0°
H351C35H352109.5°109.5°
H351C35H353109.5°109.4°
H352C35H353109.5°109.4°
O35C25O45123.5°120.0°
C25O45H45109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1'C2'C2AN3'178.0°180.0°
N1'C2'C2AH2A16.4°90.0°
N1'C2'C2AH2A2126.4°149.9°
N1'C2'C2AH2A3113.6°30.0°
N1'C2'N3'C4'0.3°0.2°
C2'N1'C6'C5'1.1°0.0°
C2'N1'C6'H6'178.9°180.0°
C6'N1'C2'C2A179.5°180.0°
C6'N1'C2'N3'1.5°0.0°
N1'C6'C5'C4'0.5°0.3°
N1'C6'C5'H6'180.0°180.0°
N1'C6'C5'C7'178.5°180.0°
C2'C2AH2A1H2A2120.0°120.1°
C2'C2AH2A1H2A3120.0°120.0°
C2'C2AH2A2H2A3120.0°120.0°
C2AC2'N3'C4'178.4°179.7°
N3'C2'C2AH2A1175.6°90.0°
N3'C2'C2AH2A255.6°30.1°
N3'C2'C2AH2A364.4°150.1°
C2'N3'C4'N4'179.4°180.0°
C2'N3'C4'C5'1.4°0.5°
H2A1C2AH2A2H2A3120.0°119.9°
N3'C4'N4'C5'179.2°179.5°
N3'C4'N4'H4'13.0°10.3°
N3'C4'N4'H4'2117.0°169.6°
N3'C4'C5'C6'1.7°0.5°
N3'C4'C5'C7'177.3°179.7°
C4'N4'H4'1H4'2120.0°180.0°
N4'C4'C5'C6'179.2°180.0°
N4'C4'C5'C7'1.8°0.2°
C5'C4'N4'H4'1177.8°170.2°
C5'C4'N4'H4'262.2°9.9°
C4'C5'C6'C7'179.0°179.8°
C4'C5'C6'H6'179.5°179.7°
C4'C5'C7'N367.7°100.4°
C4'C5'C7'H7'1171.7°19.5°
C4'C5'C7'H7'252.3°139.6°
C6'C5'C7'N3111.2°79.3°
C6'C5'C7'H7'19.4°160.7°
C6'C5'C7'H7'2128.8°40.6°
C7'C5'C6'H6'1.5°0.0°
C5'C7'N3H7'1120.5°119.9°
C5'C7'N3H7'2120.0°120.0°
C5'C7'H7'1H7'2120.3°120.1°
C5'C7'N3C2120.4°67.3°
C5'C7'N3C4101.1°167.4°
N3C7'H7'1H7'2120.4°120.0°
C7'N3C2C4142.6°119.1°
C7'N3C2S1150.7°141.3°
C7'N3C2C150.8°100.7°
C7'N3C2H284.2°23.4°
C7'N3C4C5173.7°119.8°
C7'N3C4C4A9.6°1.4°
C7'N3C4H411.1°119.1°
H7'1C7'N3C2119.1°52.7°
H7'1C7'N3C419.4°72.7°
H7'2C7'N3C20.4°172.7°
H7'2C7'N3C4138.9°47.4°
N3C2S1C15153.5°118.1°
N3C2S1H2118.3°117.9°
N3C2C15H299.9°124.2°
N3C2S1C515.9°30.5°
C2N3C4C535.5°0.8°
C2N3C4C4A147.9°120.5°
C2N3C4H4127.2°121.9°
N3C2C15O2549.5°64.7°
N3C2C15C35174.3°175.3°
N3C2C15C2567.2°55.2°
C4N3C2S18.1°22.3°
C4N3C2C15143.4°140.3°
C4N3C2H2133.1°95.6°
N3C4C5S145.7°21.1°
N3C4C5C4A176.6°121.2°
N3C4C5H4163.7°121.1°
N3C4C5C5A158.1°138.9°
N3C4C5H579.7°96.6°
N3C4C4AH4102.1°117.7°
N3C4C4AH4A1120.9°173.1°
N3C4C4AH4A2119.0°66.9°
N3C4C4AH4A30.9°53.1°
S1C2C15H2112.9°124.0°
C2S1C5C436.1°29.6°
C2S1C5C5A153.2°147.4°
C2S1C5H585.4°88.0°
S1C2C15O25163.3°176.6°
S1C2C15C3538.5°63.5°
S1C2C15C2580.0°56.6°
C15C2S1C5169.4°148.6°
C2C15O25C35127.2°120.0°
C2C15O25C25115.6°120.0°
C2C15C35C25120.2°120.0°
C2C15O25H25171.8°82.1°
C2C15C35H351141.5°59.9°
C2C15C35H35298.5°180.0°
C2C15C35H35321.5°60.0°
C2C15C25O3581.5°25.1°
C2C15C25O4582.6°155.0°
H2C2S1C5102.4°87.4°
H2C2C15O2550.4°59.4°
H2C2C15C3574.4°60.6°
H2C2C15C25167.1°179.4°
S1C5C4C5A112.4°117.8°
S1C5C4H5125.4°117.6°
S1C5C5AH5125.4°124.7°
S1C5C4C4A137.7°142.3°
S1C5C4H4118.0°100.0°
S1C5C5AC5B92.7°74.3°
S1C5C5AH5A1146.9°45.7°
S1C5C5AH5A227.3°165.7°
C4C5C5AH5122.2°124.6°
C5C4C4AH481.9°117.7°
C5C4C4AH4A163.1°48.5°
C5C4C4AH4A256.9°168.5°
C5C4C4AH4A3176.9°71.6°
C4C5C5AC5B155.0°175.0°
C4C5C5AH5A134.6°65.0°
C4C5C5AH5A285.0°55.0°
C5AC5C4C4A25.3°99.9°
C5AC5C4H45.6°17.8°
C5C5AC5BH5A1120.4°120.0°
C5C5AC5BH5A2120.0°120.1°
C5C5AH5A1H5A2120.3°120.0°
C5C5AC5BO5G142.3°180.0°
C5C5AC5BH5B1104.1°60.0°
C5C5AC5BH5B222.3°59.9°
H5C5C4C4A96.9°24.7°
H5C5C4H4116.6°142.3°
H5C5C5AC5B32.8°50.4°
H5C5C5AH5A187.7°170.3°
H5C5C5AH5A2152.7°69.7°
C4C4AH4A1H4A2120.0°120.0°
C4C4AH4A1H4A3120.0°120.0°
C4C4AH4A2H4A3120.0°119.9°
H4C4C4AH4A118.8°69.2°
H4C4C4AH4A2138.8°50.8°
H4C4C4AH4A3101.2°170.7°
H4A1C4AH4A2H4A3120.0°120.1°
C5BC5AH5A1H5A2120.3°120.0°
C5AC5BO5GH5B1113.6°120.0°
C5AC5BO5GH5B2120.0°120.1°
C5AC5BH5B1H5B2116.3°120.0°
C5AC5BO5GP1178.4°180.0°
H5A1C5AC5BO5G21.9°60.0°
H5A1C5AC5BH5B1135.5°180.0°
H5A1C5AC5BH5B298.1°60.0°
H5A2C5AC5BO5G97.7°60.0°
H5A2C5AC5BH5B115.9°60.0°
H5A2C5AC5BH5B2142.3°180.0°
O5GC5BH5B1H5B2116.3°120.0°
C5BO5GP1O1140.7°45.0°
C5BO5GP1O12162.5°75.0°
C5BO5GP1O1369.3°165.0°
H5B1C5BO5GP164.8°60.0°
H5B2C5BO5GP161.7°60.0°
O5GP1O11O12118.7°120.0°
O5GP1O11O13109.2°120.0°
O5GP1O12O13120.0°120.0°
O5GP1O11P278.7°180.0°
O5GP1O13HO13179.2°60.0°
O11P1O12O13125.5°120.0°
O11P1O13HO1373.0°60.0°
P1O11P2O2118.1°60.1°
P1O11P2O22144.3°180.0°
P1O11P2O23100.8°60.0°
O12P1O11P240.0°60.0°
O12P1O13HO1356.5°180.0°
O13P1O11P2172.1°60.0°
O11P2O21O22121.2°119.9°
O11P2O21O23113.6°120.1°
O11P2O22O23113.9°120.1°
O11P2O22H6B1127.9°180.0°
O11P2O23HO23159.5°60.0°
O21P2O22O23128.0°120.0°
O21P2O22H6B19.8°60.0°
O21P2O23HO2387.8°180.0°
O22P2O23HO2342.8°60.1°
O23P2O22H6B1118.2°59.9°
O25C15C35C25119.9°120.0°
O25C15C35H35198.7°60.1°
O25C15C35H35221.4°60.0°
O25C15C35H353141.4°180.0°
O25C15C25O3531.0°145.0°
O25C15C25O45164.9°35.0°
C35C15O25H2544.6°157.9°
C15C35H351H352120.0°120.1°
C15C35H351H353120.0°120.0°
C15C35H352H353120.0°120.0°
C35C15C25O35152.9°95.0°
C35C15C25O4543.1°85.0°
C25C15O25H2572.5°37.9°
C25C15C35H35121.2°179.9°
C25C15C35H352141.3°60.0°
C25C15C35H35398.7°60.0°
C15C25O35O45163.6°180.0°
C15C25O45H45162.4°180.0°
H351C35H352H353120.0°119.9°
O35C25O45H450.0°0.0°

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon