1RP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OAC | PAX | doub | 1.48Å | 1.51Å | |
| OAB | CAO | doub | 1.22Å | 1.28Å | |
| OAH | PAX | sing | 1.61Å | 1.48Å | |
| PAX | OAG | sing | 1.61Å | 1.56Å | |
| PAX | O5' | sing | 1.61Å | 1.56Å | |
| NAA | CAO | sing | 1.35Å | 1.42Å | |
| CAO | CAR | sing | 1.47Å | 1.54Å | |
| OAD | CAQ | doub | 1.22Å | 1.41Å | |
| O5' | C5' | sing | 1.43Å | 1.38Å | |
| C5' | C4' | sing | 1.53Å | 1.43Å | |
| CAR | CAQ | sing | 1.47Å | 1.39Å | |
| CAR | NAL | doub | 1.32Å | 1.33Å | |
| CAQ | NAW | sing | 1.35Å | 1.34Å | |
| O4' | C4' | sing | 1.44Å | 1.41Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C4' | C3' | sing | 1.55Å | 1.48Å | |
| NAL | CAP | sing | 1.32Å | 1.34Å | |
| NAW | C1' | sing | 1.47Å | 1.42Å | |
| NAW | CAJ | sing | 1.35Å | 1.34Å | |
| C3' | C2' | sing | 1.55Å | 1.43Å | |
| C3' | O3' | sing | 1.43Å | 1.37Å | |
| C1' | C2' | sing | 1.54Å | 1.49Å | |
| C2' | O2' | sing | 1.43Å | 1.37Å | |
| CAP | CAJ | doub | 1.37Å | 1.40Å | |
| CAP | FAI | sing | 1.35Å | 1.31Å | |
| OAG | H1 | sing | 0.97Å | 0.95Å | |
| OAH | H2 | sing | 0.97Å | 0.95Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C4' | H5 | sing | 1.09Å | 1.10Å | |
| C3' | H6 | sing | 1.09Å | 1.10Å | |
| O3' | H7 | sing | 0.97Å | 0.95Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| O2' | H9 | sing | 0.97Å | 0.95Å | |
| C1' | H10 | sing | 1.09Å | 1.10Å | |
| CAJ | H11 | sing | 1.08Å | 1.08Å | |
| NAA | H14 | sing | 0.97Å | 1.00Å | |
| NAA | H15 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OAC | PAX | OAH | 109.8° | 109.5° |
| OAC | PAX | OAG | 109.1° | 109.5° |
| OAC | PAX | O5' | 108.1° | 109.5° |
| OAB | CAO | NAA | 120.7° | 120.0° |
| OAB | CAO | CAR | 120.2° | 120.0° |
| OAH | PAX | OAG | 110.3° | 109.5° |
| OAH | PAX | O5' | 110.0° | 109.5° |
| PAX | OAH | H2 | 109.5° | 114.0° |
| OAG | PAX | O5' | 109.5° | 109.5° |
| PAX | OAG | H1 | 109.5° | 114.0° |
| PAX | O5' | C5' | 118.2° | 123.0° |
| NAA | CAO | CAR | 119.0° | 120.0° |
| CAO | NAA | H14 | 120.0° | 120.0° |
| CAO | NAA | H15 | 120.0° | 120.0° |
| CAO | CAR | CAQ | 120.7° | 120.4° |
| CAO | CAR | NAL | 119.4° | 120.4° |
| OAD | CAQ | CAR | 121.0° | 120.7° |
| OAD | CAQ | NAW | 119.8° | 120.7° |
| O5' | C5' | C4' | 116.8° | 109.4° |
| O5' | C5' | H3 | 107.6° | 109.5° |
| O5' | C5' | H4 | 107.6° | 109.5° |
| C5' | C4' | O4' | 110.8° | 110.4° |
| C5' | C4' | C3' | 109.1° | 110.3° |
| C4' | C5' | H3 | 107.6° | 109.4° |
| C4' | C5' | H4 | 107.6° | 109.5° |
| C5' | C4' | H5 | 110.3° | 110.4° |
| CAQ | CAR | NAL | 119.9° | 119.2° |
| CAR | CAQ | NAW | 119.2° | 118.6° |
| CAR | NAL | CAP | 121.1° | 120.6° |
| CAQ | NAW | C1' | 118.3° | 120.3° |
| CAQ | NAW | CAJ | 121.0° | 119.3° |
| C4' | O4' | C1' | 104.8° | 105.3° |
| O4' | C4' | C3' | 106.2° | 104.8° |
| O4' | C4' | H5 | 110.7° | 110.5° |
| O4' | C1' | NAW | 113.5° | 110.4° |
| O4' | C1' | C2' | 103.5° | 104.8° |
| O4' | C1' | H10 | 110.6° | 110.4° |
| C4' | C3' | C2' | 105.8° | 104.0° |
| C4' | C3' | O3' | 109.4° | 110.5° |
| C3' | C4' | H5 | 109.7° | 110.3° |
| C4' | C3' | H6 | 109.6° | 110.6° |
| NAL | CAP | CAJ | 119.0° | 121.6° |
| NAL | CAP | FAI | 119.7° | 119.2° |
| C1' | NAW | CAJ | 120.6° | 120.3° |
| NAW | C1' | C2' | 109.3° | 110.4° |
| NAW | C1' | H10 | 110.4° | 110.4° |
| NAW | CAJ | CAP | 119.8° | 120.8° |
| NAW | CAJ | H11 | 120.1° | 119.5° |
| C2' | C3' | O3' | 110.4° | 110.5° |
| C3' | C2' | C1' | 104.4° | 104.1° |
| C3' | C2' | O2' | 110.4° | 110.5° |
| C2' | C3' | H6 | 110.3° | 110.5° |
| C3' | C2' | H8 | 110.4° | 110.5° |
| O3' | C3' | H6 | 111.2° | 110.6° |
| C3' | O3' | H7 | 109.5° | 114.1° |
| C1' | C2' | O2' | 110.3° | 110.5° |
| C1' | C2' | H8 | 109.6° | 110.6° |
| C2' | C1' | H10 | 109.3° | 110.4° |
| O2' | C2' | H8 | 111.4° | 110.5° |
| C2' | O2' | H9 | 109.5° | 114.0° |
| CAJ | CAP | FAI | 121.4° | 119.2° |
| CAP | CAJ | H11 | 120.1° | 119.7° |
| H3 | C5' | H4 | 109.5° | 109.5° |
| H14 | NAA | H15 | 120.0° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OAC | PAX | OAH | OAG | 120.3° | 120.0° |
| OAC | PAX | OAH | O5' | 118.8° | 120.0° |
| OAC | PAX | OAG | O5' | 118.1° | 120.0° |
| OAC | PAX | O5' | C5' | 39.6° | 55.0° |
| OAC | PAX | OAG | H1 | 0.0° | 180.0° |
| OAC | PAX | OAH | H2 | 0.0° | 60.0° |
| OAB | CAO | NAA | CAR | 179.9° | 180.0° |
| OAB | CAO | CAR | CAQ | 4.2° | 0.0° |
| OAB | CAO | CAR | NAL | 175.6° | 180.0° |
| OAB | CAO | NAA | H14 | 0.0° | 179.9° |
| OAB | CAO | NAA | H15 | 180.0° | 0.1° |
| OAH | PAX | OAG | O5' | 121.2° | 120.0° |
| OAH | PAX | O5' | C5' | 159.5° | 175.0° |
| OAH | PAX | OAG | H1 | 120.7° | 60.0° |
| OAG | PAX | O5' | C5' | 79.1° | 65.0° |
| OAG | PAX | OAH | H2 | 120.3° | 60.0° |
| PAX | O5' | C5' | C4' | 171.4° | 180.0° |
| O5' | PAX | OAG | H1 | 118.1° | 60.0° |
| O5' | PAX | OAH | H2 | 118.8° | 180.0° |
| PAX | O5' | C5' | H3 | 50.4° | 60.1° |
| PAX | O5' | C5' | H4 | 67.5° | 60.0° |
| NAA | CAO | CAR | CAQ | 175.9° | 180.0° |
| NAA | CAO | CAR | NAL | 4.3° | 0.0° |
| CAO | NAA | H14 | H15 | 180.0° | 179.9° |
| CAO | CAR | CAQ | OAD | 0.2° | 0.0° |
| CAO | CAR | CAQ | NAL | 179.8° | 180.0° |
| CAO | CAR | CAQ | NAW | 179.9° | 180.0° |
| CAO | CAR | NAL | CAP | 179.8° | 179.7° |
| CAR | CAO | NAA | H14 | 179.9° | 0.1° |
| CAR | CAO | NAA | H15 | 0.1° | 179.9° |
| OAD | CAQ | CAR | NAW | 180.0° | 180.0° |
| OAD | CAQ | CAR | NAL | 180.0° | 179.9° |
| OAD | CAQ | NAW | C1' | 0.0° | 0.0° |
| OAD | CAQ | NAW | CAJ | 179.9° | 179.7° |
| O5' | C5' | C4' | H3 | 121.1° | 119.9° |
| O5' | C5' | C4' | H4 | 121.0° | 120.1° |
| O5' | C5' | C4' | O4' | 119.9° | 69.6° |
| O5' | C5' | C4' | C3' | 3.4° | 175.0° |
| O5' | C5' | H3 | H4 | 116.6° | 120.1° |
| O5' | C5' | C4' | H5 | 117.2° | 52.8° |
| C5' | C4' | O4' | C3' | 118.3° | 118.8° |
| C5' | C4' | O4' | H5 | 122.7° | 122.4° |
| C5' | C4' | O4' | C1' | 149.7° | 159.3° |
| C5' | C4' | C3' | H5 | 121.0° | 122.2° |
| C5' | C4' | C3' | C2' | 129.5° | 142.8° |
| C5' | C4' | C3' | O3' | 111.6° | 98.6° |
| C4' | C5' | H3 | H4 | 116.7° | 120.0° |
| C5' | C4' | C3' | H6 | 10.6° | 24.2° |
| CAQ | CAR | NAL | CAP | 0.0° | 0.2° |
| CAR | CAQ | NAW | C1' | 180.0° | 180.0° |
| CAR | CAQ | NAW | CAJ | 0.1° | 0.3° |
| NAL | CAR | CAQ | NAW | 0.1° | 0.1° |
| CAR | NAL | CAP | CAJ | 0.0° | 0.3° |
| CAR | NAL | CAP | FAI | 179.9° | 179.7° |
| CAQ | NAW | C1' | O4' | 40.4° | 126.2° |
| CAQ | NAW | C1' | CAJ | 179.9° | 179.7° |
| CAQ | NAW | C1' | C2' | 74.6° | 118.5° |
| CAQ | NAW | CAJ | CAP | 0.1° | 0.3° |
| CAQ | NAW | C1' | H10 | 165.1° | 3.8° |
| CAQ | NAW | CAJ | H11 | 179.9° | 179.7° |
| O4' | C4' | C3' | H5 | 119.6° | 118.9° |
| C4' | O4' | C1' | NAW | 158.1° | 159.4° |
| O4' | C4' | C3' | C2' | 10.1° | 24.0° |
| O4' | C4' | C3' | O3' | 129.0° | 142.6° |
| C4' | O4' | C1' | C2' | 39.7° | 40.5° |
| O4' | C4' | C5' | H3 | 119.1° | 50.3° |
| O4' | C4' | C5' | H4 | 1.2° | 170.3° |
| O4' | C4' | C3' | H6 | 108.8° | 94.7° |
| C4' | O4' | C1' | H10 | 77.2° | 78.3° |
| C1' | O4' | C4' | C3' | 31.4° | 40.5° |
| O4' | C1' | NAW | C2' | 115.0° | 115.4° |
| O4' | C1' | NAW | H10 | 124.8° | 122.3° |
| O4' | C1' | NAW | CAJ | 139.8° | 53.5° |
| O4' | C1' | C2' | C3' | 33.0° | 24.0° |
| O4' | C1' | C2' | H10 | 117.8° | 118.8° |
| O4' | C1' | C2' | O2' | 151.7° | 142.6° |
| C1' | O4' | C4' | H5 | 87.6° | 78.3° |
| O4' | C1' | C2' | H8 | 85.2° | 94.7° |
| C4' | C3' | C2' | O3' | 118.3° | 118.6° |
| C4' | C3' | C2' | H6 | 118.4° | 118.7° |
| C4' | C3' | O3' | H6 | 121.2° | 122.7° |
| C4' | C3' | C2' | C1' | 13.7° | 0.0° |
| C4' | C3' | C2' | O2' | 132.3° | 118.7° |
| C3' | C4' | C5' | H3 | 124.4° | 65.0° |
| C3' | C4' | C5' | H4 | 117.7° | 55.0° |
| C4' | C3' | O3' | H7 | 180.0° | 180.0° |
| C4' | C3' | C2' | H8 | 103.9° | 118.8° |
| NAL | CAP | CAJ | NAW | 0.0° | 0.0° |
| NAL | CAP | CAJ | FAI | 179.9° | 180.0° |
| NAL | CAP | CAJ | H11 | 180.0° | 180.0° |
| NAW | C1' | C2' | C3' | 154.3° | 142.8° |
| NAW | C1' | C2' | H10 | 120.9° | 122.3° |
| NAW | C1' | C2' | O2' | 87.0° | 98.5° |
| C1' | NAW | CAJ | CAP | 180.0° | 180.0° |
| NAW | C1' | C2' | H8 | 36.0° | 24.1° |
| C1' | NAW | CAJ | H11 | 0.0° | 0.0° |
| CAJ | NAW | C1' | C2' | 105.3° | 61.9° |
| NAW | CAJ | CAP | H11 | 180.0° | 180.0° |
| NAW | CAJ | CAP | FAI | 180.0° | 180.0° |
| CAJ | NAW | C1' | H10 | 15.0° | 175.9° |
| C2' | C3' | O3' | H6 | 122.7° | 122.6° |
| C3' | C2' | C1' | O2' | 118.7° | 118.7° |
| C3' | C2' | C1' | H8 | 118.3° | 118.7° |
| C3' | C2' | O2' | H8 | 123.1° | 122.6° |
| C2' | C3' | C4' | H5 | 109.6° | 94.9° |
| C2' | C3' | O3' | H7 | 64.0° | 65.4° |
| C3' | C2' | O2' | H9 | 180.0° | 61.4° |
| C3' | C2' | C1' | H10 | 84.8° | 94.9° |
| O3' | C3' | C2' | C1' | 104.5° | 118.7° |
| O3' | C3' | C2' | O2' | 14.1° | 0.0° |
| O3' | C3' | C4' | H5 | 9.3° | 23.7° |
| O3' | C3' | C2' | H8 | 137.8° | 122.6° |
| C1' | C2' | O2' | H8 | 122.0° | 122.8° |
| C1' | C2' | C3' | H6 | 132.2° | 118.7° |
| C1' | C2' | O2' | H9 | 65.1° | 176.1° |
| O2' | C2' | C3' | H6 | 109.2° | 122.6° |
| O2' | C2' | C1' | H10 | 33.8° | 23.8° |
| FAI | CAP | CAJ | H11 | 0.0° | 0.0° |
| H3 | C5' | C4' | H5 | 3.8° | 172.8° |
| H4 | C5' | C4' | H5 | 121.7° | 67.2° |
| H5 | C4' | C3' | H6 | 131.6° | 146.4° |
| H6 | C3' | O3' | H7 | 58.8° | 57.3° |
| H6 | C3' | C2' | H8 | 14.5° | 0.1° |
| H8 | C2' | O2' | H9 | 56.8° | 61.1° |
| H8 | C2' | C1' | H10 | 156.9° | 146.5° |
