1RN
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C2 | sing | 1.34Å | 1.38Å | |
| N1 | C6 | sing | 1.36Å | 1.38Å | |
| N1 | C1' | sing | 1.46Å | 1.47Å | |
| C2 | S2 | doub | 1.71Å | 1.23Å | |
| C2 | N3 | sing | 1.34Å | 1.38Å | |
| N3 | C4 | sing | 1.35Å | 1.39Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C4 | C5 | sing | 1.47Å | 1.43Å | |
| C5 | C6 | doub | 1.38Å | 1.34Å | |
| C5 | C3 | sing | 1.47Å | 1.40Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| O2' | C2' | sing | 1.43Å | 1.41Å | |
| C2' | C3' | sing | 1.55Å | 1.50Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.47Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| O5' | P | sing | 1.61Å | 1.59Å | |
| P | OP1 | sing | 1.61Å | 1.48Å | |
| P | OP2 | doub | 1.48Å | 1.49Å | |
| C3 | N2 | doub | 1.30Å | 1.35Å | |
| N2 | C7 | sing | 1.46Å | 1.23Å | |
| C7 | C1 | sing | 1.51Å | 1.31Å | |
| C1 | O2 | doub | 1.21Å | 1.25Å | |
| C1 | O1 | sing | 1.34Å | 1.25Å | |
| C6 | H1 | sing | 1.08Å | 1.08Å | |
| C1' | H2 | sing | 1.09Å | 1.10Å | |
| O2' | H3 | sing | 0.97Å | 0.95Å | |
| C2' | H4 | sing | 1.09Å | 1.10Å | |
| O3' | H5 | sing | 0.97Å | 0.95Å | |
| C3' | H6 | sing | 1.09Å | 1.10Å | |
| C4' | H7 | sing | 1.09Å | 1.10Å | |
| C5' | H8 | sing | 1.09Å | 1.10Å | |
| C5' | H9 | sing | 1.09Å | 1.10Å | |
| OP1 | H10 | sing | 0.97Å | 0.95Å | |
| C3 | H12 | sing | 1.08Å | 1.08Å | |
| C7 | H13 | sing | 1.09Å | 1.10Å | |
| C7 | H14 | sing | 1.09Å | 1.10Å | |
| O1 | H15 | sing | 0.97Å | 0.95Å | |
| N3 | H16 | sing | 0.97Å | 1.00Å | |
| P | OP3 | sing | 1.61Å | 61.45Å | |
| OP3 | H18 | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | N1 | C6 | 121.1° | 121.5° |
| C2 | N1 | C1' | 117.9° | 119.2° |
| N1 | C2 | S2 | 123.0° | 118.9° |
| N1 | C2 | N3 | 114.5° | 122.1° |
| C6 | N1 | C1' | 121.0° | 119.3° |
| N1 | C6 | C5 | 122.9° | 119.3° |
| N1 | C6 | H1 | 118.5° | 120.3° |
| N1 | C1' | C2' | 114.7° | 110.6° |
| N1 | C1' | O4' | 109.1° | 110.6° |
| N1 | C1' | H2 | 109.5° | 110.6° |
| S2 | C2 | N3 | 122.5° | 118.9° |
| C2 | N3 | C4 | 127.2° | 120.4° |
| C2 | N3 | H16 | 116.4° | 119.8° |
| N3 | C4 | O4 | 119.5° | 120.7° |
| N3 | C4 | C5 | 114.8° | 118.6° |
| C4 | N3 | H16 | 116.4° | 119.8° |
| O4 | C4 | C5 | 125.7° | 120.8° |
| C4 | C5 | C6 | 119.5° | 118.1° |
| C4 | C5 | C3 | 120.1° | 121.0° |
| C6 | C5 | C3 | 120.3° | 121.0° |
| C5 | C6 | H1 | 118.6° | 120.3° |
| C5 | C3 | N2 | 115.4° | 120.0° |
| C5 | C3 | H12 | 122.3° | 120.0° |
| C2' | C1' | O4' | 104.7° | 103.5° |
| C1' | C2' | O2' | 103.6° | 110.9° |
| C1' | C2' | C3' | 101.2° | 102.1° |
| C2' | C1' | H2 | 108.7° | 110.6° |
| C1' | C2' | H4 | 107.2° | 110.9° |
| C1' | O4' | C4' | 110.0° | 107.0° |
| O4' | C1' | H2 | 110.1° | 110.8° |
| O2' | C2' | C3' | 126.9° | 110.9° |
| C2' | O2' | H3 | 109.5° | 114.0° |
| O2' | C2' | H4 | 108.7° | 110.9° |
| C2' | C3' | O3' | 118.9° | 110.5° |
| C2' | C3' | C4' | 100.3° | 104.2° |
| C3' | C2' | H4 | 107.5° | 111.0° |
| C2' | C3' | H6 | 109.8° | 110.5° |
| O3' | C3' | C4' | 106.4° | 110.5° |
| C3' | O3' | H5 | 109.5° | 114.0° |
| O3' | C3' | H6 | 111.0° | 110.5° |
| C3' | C4' | O4' | 102.0° | 107.3° |
| C3' | C4' | C5' | 115.1° | 109.9° |
| C4' | C3' | H6 | 109.6° | 110.6° |
| C3' | C4' | H7 | 110.0° | 109.9° |
| O4' | C4' | C5' | 108.7° | 109.9° |
| O4' | C4' | H7 | 110.7° | 109.9° |
| C4' | C5' | O5' | 110.3° | 109.4° |
| C5' | C4' | H7 | 110.1° | 110.0° |
| C4' | C5' | H8 | 109.2° | 109.5° |
| C4' | C5' | H9 | 109.3° | 109.5° |
| C5' | O5' | P | 120.6° | 123.0° |
| O5' | C5' | H8 | 109.3° | 109.5° |
| O5' | C5' | H9 | 109.3° | 109.5° |
| O5' | P | OP1 | 108.4° | 109.4° |
| O5' | P | OP2 | 108.2° | 109.5° |
| O5' | P | OP3 | 109.6° | 109.5° |
| OP1 | P | OP2 | 119.5° | 109.5° |
| P | OP1 | H10 | 109.5° | 114.0° |
| OP1 | P | OP3 | 135.0° | 109.5° |
| OP2 | P | OP3 | 69.0° | 109.5° |
| C3 | N2 | C7 | 117.2° | 120.0° |
| N2 | C3 | H12 | 122.3° | 120.0° |
| N2 | C7 | C1 | 117.7° | 109.5° |
| N2 | C7 | H13 | 107.4° | 109.5° |
| N2 | C7 | H14 | 107.4° | 109.5° |
| C7 | C1 | O2 | 116.9° | 120.0° |
| C7 | C1 | O1 | 117.1° | 120.0° |
| C1 | C7 | H13 | 107.4° | 109.4° |
| C1 | C7 | H14 | 107.4° | 109.5° |
| O2 | C1 | O1 | 125.7° | 120.0° |
| C1 | O1 | H15 | 109.5° | 117.0° |
| H8 | C5' | H9 | 109.5° | 109.5° |
| H13 | C7 | H14 | 109.5° | 109.5° |
| P | OP3 | H18 | 90.0° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2 | N1 | C6 | C1' | 179.9° | 179.7° |
| N1 | C2 | S2 | N3 | 180.0° | 179.9° |
| N1 | C2 | N3 | C4 | 0.3° | 0.1° |
| C2 | N1 | C6 | C5 | 0.1° | 0.0° |
| C2 | N1 | C1' | C2' | 112.8° | 85.6° |
| C2 | N1 | C1' | O4' | 130.2° | 160.3° |
| C2 | N1 | C6 | H1 | 179.9° | 180.0° |
| C2 | N1 | C1' | H2 | 9.7° | 37.2° |
| N1 | C2 | N3 | H16 | 179.7° | 180.0° |
| C6 | N1 | C2 | S2 | 179.6° | 180.0° |
| C6 | N1 | C2 | N3 | 0.4° | 0.0° |
| N1 | C6 | C5 | C4 | 0.7° | 0.0° |
| N1 | C6 | C5 | H1 | 180.0° | 180.0° |
| N1 | C6 | C5 | C3 | 179.4° | 180.0° |
| C6 | N1 | C1' | C2' | 67.3° | 94.7° |
| C6 | N1 | C1' | O4' | 49.7° | 19.4° |
| C6 | N1 | C1' | H2 | 170.2° | 142.5° |
| C1' | N1 | C2 | S2 | 0.5° | 0.3° |
| C1' | N1 | C2 | N3 | 179.5° | 179.6° |
| C1' | N1 | C6 | C5 | 180.0° | 179.7° |
| N1 | C1' | C2' | O4' | 119.5° | 118.5° |
| N1 | C1' | C2' | H2 | 122.9° | 122.9° |
| N1 | C1' | O4' | H2 | 120.1° | 123.0° |
| N1 | C1' | C2' | O2' | 19.0° | 37.4° |
| N1 | C1' | C2' | C3' | 151.7° | 155.5° |
| N1 | C1' | O4' | C4' | 129.1° | 158.5° |
| C1' | N1 | C6 | H1 | 0.0° | 0.3° |
| N1 | C1' | C2' | H4 | 95.8° | 86.3° |
| S2 | C2 | N3 | C4 | 179.6° | 180.0° |
| S2 | C2 | N3 | H16 | 0.3° | 0.0° |
| C2 | N3 | C4 | H16 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 179.5° | 180.0° |
| C2 | N3 | C4 | C5 | 0.2° | 0.0° |
| N3 | C4 | O4 | C5 | 179.7° | 179.9° |
| N3 | C4 | C5 | C6 | 0.8° | 0.0° |
| N3 | C4 | C5 | C3 | 179.3° | 180.0° |
| O4 | C4 | C5 | C6 | 179.0° | 179.9° |
| O4 | C4 | C5 | C3 | 0.9° | 0.1° |
| O4 | C4 | N3 | H16 | 0.5° | 0.1° |
| C4 | C5 | C6 | C3 | 179.9° | 180.0° |
| C4 | C5 | C3 | N2 | 170.4° | 0.0° |
| C4 | C5 | C6 | H1 | 179.3° | 179.9° |
| C4 | C5 | C3 | H12 | 9.6° | 180.0° |
| C5 | C4 | N3 | H16 | 179.7° | 180.0° |
| C6 | C5 | C3 | N2 | 9.7° | 180.0° |
| C6 | C5 | C3 | H12 | 170.3° | 0.0° |
| C5 | C3 | N2 | H12 | 180.0° | 180.0° |
| C5 | C3 | N2 | C7 | 179.8° | 180.0° |
| C3 | C5 | C6 | H1 | 0.6° | 0.1° |
| C2' | C1' | O4' | H2 | 116.6° | 118.5° |
| C1' | C2' | O2' | C3' | 115.6° | 112.7° |
| C1' | C2' | O2' | H4 | 113.8° | 123.6° |
| C1' | C2' | C3' | H4 | 112.2° | 118.2° |
| C1' | C2' | C3' | O3' | 70.2° | 97.8° |
| C1' | C2' | C3' | C4' | 45.2° | 20.9° |
| C2' | C1' | O4' | C4' | 5.8° | 40.1° |
| C1' | C2' | O2' | H3 | 180.0° | 180.0° |
| C1' | C2' | C3' | H6 | 160.5° | 139.7° |
| O4' | C1' | C2' | O2' | 100.5° | 81.1° |
| O4' | C1' | C2' | C3' | 32.2° | 37.0° |
| C1' | O4' | C4' | C3' | 22.7° | 26.5° |
| C1' | O4' | C4' | C5' | 99.3° | 145.9° |
| O4' | C1' | C2' | H4 | 144.7° | 155.3° |
| C1' | O4' | C4' | H7 | 139.6° | 92.9° |
| O2' | C2' | C3' | H4 | 131.1° | 123.6° |
| O2' | C2' | C3' | O3' | 173.1° | 144.0° |
| O2' | C2' | C3' | C4' | 71.5° | 97.3° |
| O2' | C2' | C1' | H2 | 141.9° | 160.2° |
| O2' | C2' | C3' | H6 | 43.8° | 21.5° |
| C2' | C3' | O3' | C4' | 112.1° | 114.8° |
| C2' | C3' | O3' | H6 | 128.7° | 122.5° |
| C2' | C3' | C4' | H6 | 115.4° | 118.7° |
| C2' | C3' | C4' | O4' | 41.9° | 2.0° |
| C2' | C3' | C4' | C5' | 75.6° | 121.4° |
| C3' | C2' | C1' | H2 | 85.4° | 81.6° |
| C3' | C2' | O2' | H3 | 64.4° | 67.4° |
| C2' | C3' | O3' | H5 | 180.0° | 61.5° |
| C2' | C3' | C4' | H7 | 159.3° | 117.4° |
| O3' | C3' | C4' | H6 | 120.1° | 122.6° |
| O3' | C3' | C4' | O4' | 82.6° | 120.7° |
| O3' | C3' | C4' | C5' | 160.0° | 119.9° |
| O3' | C3' | C2' | H4 | 42.1° | 20.4° |
| O3' | C3' | C4' | H7 | 34.9° | 1.3° |
| C3' | C4' | O4' | C5' | 122.0° | 119.4° |
| C3' | C4' | O4' | H7 | 116.9° | 119.4° |
| C3' | C4' | C5' | H7 | 125.0° | 121.1° |
| C3' | C4' | C5' | O5' | 65.9° | 175.0° |
| C4' | C3' | C2' | H4 | 157.5° | 139.1° |
| C4' | C3' | O3' | H5 | 67.9° | 176.2° |
| C3' | C4' | C5' | H8 | 54.3° | 55.0° |
| C3' | C4' | C5' | H9 | 174.0° | 65.0° |
| O4' | C4' | C5' | H7 | 121.4° | 121.1° |
| O4' | C4' | C5' | O5' | 179.5° | 67.2° |
| C4' | O4' | C1' | H2 | 110.8° | 78.5° |
| O4' | C4' | C3' | H6 | 157.3° | 116.7° |
| O4' | C4' | C5' | H8 | 59.4° | 172.8° |
| O4' | C4' | C5' | H9 | 60.4° | 52.8° |
| C4' | C5' | O5' | H8 | 120.1° | 120.0° |
| C4' | C5' | O5' | H9 | 120.1° | 120.0° |
| C4' | C5' | O5' | P | 127.1° | 180.0° |
| C5' | C4' | C3' | H6 | 39.8° | 2.7° |
| C4' | C5' | H8 | H9 | 119.6° | 120.0° |
| C5' | O5' | P | OP1 | 1.4° | 65.0° |
| C5' | O5' | P | OP2 | 132.3° | 55.0° |
| O5' | C5' | C4' | H7 | 59.1° | 53.9° |
| O5' | C5' | H8 | H9 | 119.6° | 120.0° |
| C5' | O5' | P | OP3 | 154.2° | 175.0° |
| O5' | P | OP1 | OP2 | 124.5° | 120.0° |
| O5' | P | OP1 | OP3 | 146.5° | 120.0° |
| O5' | P | OP2 | OP3 | 104.6° | 120.0° |
| P | O5' | C5' | H8 | 7.0° | 60.0° |
| P | O5' | C5' | H9 | 112.8° | 60.0° |
| O5' | P | OP1 | H10 | 124.4° | 60.1° |
| O5' | P | OP3 | H18 | 90.0° | 180.0° |
| OP1 | P | OP2 | OP3 | 130.8° | 120.0° |
| OP1 | P | OP3 | H18 | 90.0° | 60.0° |
| OP2 | P | OP1 | H10 | 0.0° | 180.0° |
| OP2 | P | OP3 | H18 | 90.0° | 60.0° |
| C3 | N2 | C7 | C1 | 104.0° | 115.0° |
| C3 | N2 | C7 | H13 | 17.2° | 125.0° |
| C3 | N2 | C7 | H14 | 134.9° | 5.0° |
| N2 | C7 | C1 | H13 | 121.2° | 120.0° |
| N2 | C7 | C1 | H14 | 121.2° | 120.0° |
| N2 | C7 | C1 | O2 | 178.0° | 0.1° |
| N2 | C7 | C1 | O1 | 2.7° | 180.0° |
| C7 | N2 | C3 | H12 | 0.2° | 0.0° |
| N2 | C7 | H13 | H14 | 116.2° | 120.1° |
| C7 | C1 | O2 | O1 | 174.8° | 179.9° |
| C1 | C7 | H13 | H14 | 116.2° | 120.0° |
| C7 | C1 | O1 | H15 | 174.8° | 180.0° |
| O2 | C1 | C7 | H13 | 56.7° | 120.1° |
| O2 | C1 | C7 | H14 | 60.9° | 120.0° |
| O2 | C1 | O1 | H15 | 0.0° | 0.1° |
| O1 | C1 | C7 | H13 | 118.5° | 60.0° |
| O1 | C1 | C7 | H14 | 123.9° | 59.9° |
| H2 | C1' | C2' | H4 | 27.1° | 36.6° |
| H3 | O2' | C2' | H4 | 66.2° | 56.3° |
| H4 | C2' | C3' | H6 | 87.2° | 102.1° |
| H5 | O3' | C3' | H6 | 51.3° | 61.1° |
| H6 | C3' | C4' | H7 | 85.3° | 123.9° |
| H7 | C4' | C5' | H8 | 179.2° | 66.1° |
| H7 | C4' | C5' | H9 | 61.1° | 173.9° |
| H10 | OP1 | P | OP3 | 89.1° | 60.0° |
