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1QD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O34C03sing1.43Å1.43Å
C03C04sing1.54Å1.53Å
C03C02sing1.55Å1.53Å
C04C05sing1.53Å1.51Å
C04O33sing1.44Å1.45Å
O32P07doub1.48Å1.46Å
C05O06sing1.43Å1.45Å
O35C02sing1.43Å1.44Å
O33C01sing1.44Å1.40Å
O06P07sing1.61Å1.59Å
O31P07sing1.61Å1.49Å
C02C01sing1.55Å1.53Å
P07O08sing1.61Å1.58Å
C01N36sing1.46Å1.58Å
O08P09sing1.61Å1.55Å
N36C37doub1.31Å1.33ÅAromatic
N36C41sing1.33Å1.36ÅAromatic
C37C38sing1.40Å1.44ÅAromatic
O30P09doub1.48Å1.48Å
P09O10sing1.61Å1.53Å
P09O11sing1.61Å1.64Å
C41C40doub1.36Å1.41ÅAromatic
C38C45sing1.40Å1.43ÅAromatic
C38C39doub1.42Å1.40ÅAromatic
O11C12sing1.43Å1.43Å
C40C39sing1.41Å1.42ÅAromatic
C45C44doub1.36Å1.42ÅAromatic
C39C42sing1.40Å1.43ÅAromatic
C12C13sing1.53Å1.50Å
C44C43sing1.39Å1.41ÅAromatic
C13O17sing1.44Å1.44Å
C13C14sing1.54Å1.51Å
C42C43doub1.36Å1.40ÅAromatic
C42I46sing2.09Å2.11Å
O29C14sing1.43Å1.42Å
O17C16sing1.44Å1.41Å
C14C15sing1.55Å1.52Å
C16C15sing1.55Å1.54Å
C16N18sing1.47Å1.47Å
C15O28sing1.43Å1.43Å
N18C19sing1.36Å1.35ÅAromatic
N18C22sing1.37Å1.34ÅAromatic
C19N20doub1.30Å1.33ÅAromatic
C22N23doub1.33Å1.39ÅAromatic
C22C21sing1.41Å1.35ÅAromatic
N23C24sing1.32Å1.33ÅAromatic
N20C21sing1.36Å1.38ÅAromatic
C21C26doub1.40Å1.42ÅAromatic
C24N25doub1.32Å1.33ÅAromatic
C26N25sing1.33Å1.34ÅAromatic
C26N27sing1.38Å1.43Å
O10H1sing0.97Å0.95Å
C13H131sing1.09Å1.10Å
C15H151sing1.09Å1.10Å
C16H161sing1.09Å1.10Å
C19H2sing1.08Å1.08Å
C01H011sing1.09Å1.10Å
C02H021sing1.09Å1.10Å
C03H031sing1.09Å1.10Å
C04H041sing1.09Å1.10Å
C05H3sing1.09Å1.10Å
C05H4sing1.09Å1.10Å
C12H5sing1.09Å1.10Å
C12H6sing1.09Å1.10Å
C14H141sing1.09Å1.10Å
C24H7sing1.08Å1.08Å
C37H8sing1.08Å1.08Å
C40H9sing1.08Å1.08Å
C41H10sing1.08Å1.08Å
C43H11sing1.08Å1.08Å
C44H12sing1.08Å1.08Å
C45H13sing1.08Å1.08Å
N27H14sing0.97Å1.00Å
N27H15sing0.97Å1.00Å
O28H16sing0.97Å0.95Å
O29H17sing0.97Å0.95Å
O31H18sing0.97Å0.95Å
O34H19sing0.97Å0.95Å
O35H20sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O34C03C04112.8°110.5°
O34C03C02112.1°110.6°
O34C03H031110.1°110.5°
C03O34H19109.5°114.0°
C04C03C02104.0°104.2°
C03C04C05112.6°109.9°
C03C04O33107.3°107.4°
C04C03H031108.8°110.6°
C03C04H041109.4°109.9°
C03C02O35115.3°111.0°
C03C02C01102.1°102.1°
C03C02H021110.7°110.9°
C02C03H031108.8°110.4°
C05C04O33107.2°110.0°
C04C05O06107.0°109.5°
C05C04H041109.7°109.8°
C04C05H3110.1°109.5°
C04C05H4110.0°109.5°
C04O33C01106.0°106.9°
O33C04H041110.5°109.9°
O32P07O06111.5°109.5°
O32P07O31114.3°109.5°
O32P07O08113.8°109.4°
C05O06P07120.0°123.0°
O06C05H3110.1°109.5°
O06C05H4110.1°109.4°
O35C02C01105.6°110.9°
O35C02H021112.0°110.8°
C02O35H20109.5°114.0°
O33C01C02112.6°103.6°
O33C01N36111.5°110.6°
O33C01H011107.3°110.6°
O06P07O31107.6°109.5°
O06P07O0894.6°109.5°
O31P07O08113.2°109.5°
P07O31H18109.5°114.0°
C02C01N36113.8°110.6°
C02C01H011105.7°110.6°
C01C02H021110.6°110.9°
P07O08P09131.8°134.1°
C01N36C37118.7°118.6°
C01N36C41117.9°118.6°
N36C01H011105.2°110.6°
O08P09O30105.0°109.4°
O08P09O10114.4°109.5°
O08P09O11104.2°109.5°
C37N36C41123.0°122.8°
N36C37C38117.9°119.9°
N36C37H8121.0°120.1°
N36C41C40122.1°121.9°
N36C41H10118.9°119.1°
C37C38C45119.4°122.1°
C37C38C39120.4°118.6°
C38C37H8121.0°120.0°
O30P09O10112.6°109.5°
O30P09O11110.1°109.5°
O10P09O11110.1°109.5°
P09O10H1109.5°114.0°
P09O11C12112.5°123.0°
C41C40C39116.8°118.7°
C41C40H9121.6°120.7°
C40C41H10118.9°119.0°
C45C38C39120.2°119.3°
C38C45C44119.6°119.5°
C38C45H13120.2°120.2°
C38C39C40119.7°118.2°
C38C39C42119.7°119.6°
O11C12C13103.3°109.5°
O11C12H5111.0°109.5°
O11C12H6111.0°109.5°
C40C39C42120.6°122.2°
C39C40H9121.6°120.7°
C45C44C43119.5°121.1°
C45C44H12120.3°119.4°
C44C45H13120.2°120.2°
C39C42C43119.6°119.5°
C39C42I46119.4°120.3°
C12C13O17107.5°109.9°
C12C13C14108.7°109.9°
C12C13H131110.2°110.0°
C13C12H5111.0°109.5°
C13C12H6111.0°109.4°
C44C43C42121.3°121.0°
C44C43H11119.3°119.5°
C43C44H12120.3°119.5°
O17C13C14109.1°107.3°
C13O17C16105.6°106.9°
O17C13H131111.1°109.8°
C13C14O29109.2°110.5°
C13C14C15101.5°104.2°
C14C13H131110.1°109.9°
C13C14H141110.9°110.4°
C43C42I46120.9°120.2°
C42C43H11119.3°119.5°
O29C14C15111.5°110.6°
O29C14H141112.3°110.6°
C14O29H17109.5°113.9°
O17C16C15110.9°103.5°
O17C16N18108.4°110.6°
O17C16H161109.5°110.7°
C14C15C16103.0°102.1°
C14C15O28110.1°110.9°
C14C15H151110.6°111.0°
C15C14H141110.9°110.5°
C15C16N18111.5°110.6°
C16C15O28110.4°110.9°
C16C15H151110.4°110.9°
C15C16H161107.9°110.6°
C16N18C19129.5°126.3°
C16N18C22121.5°126.3°
N18C16H161108.6°110.5°
O28C15H151112.0°110.8°
C15O28H16109.5°114.0°
C19N18C22109.0°107.4°
N18C19N20109.3°110.0°
N18C19H2125.4°125.0°
N18C22N23131.0°134.9°
N18C22C21106.7°106.0°
C19N20C21106.0°109.4°
N20C19H2125.4°125.0°
N23C22C21122.3°119.1°
C22N23C24117.7°120.7°
C22C21N20109.1°107.1°
C22C21C26117.1°118.2°
N23C24N25122.1°122.5°
N23C24H7118.9°118.8°
N20C21C26133.8°134.7°
C21C26N25118.8°118.5°
C21C26N27118.2°120.7°
C24N25C26122.0°121.2°
N25C24H7119.0°118.8°
N25C26N27123.0°120.8°
C26N27H14109.5°120.0°
C26N27H15109.5°119.9°
H3C05H4109.5°109.4°
H5C12H6109.5°109.5°
H14N27H15109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O34C03C04C02121.7°118.8°
O34C03C04H031122.5°122.7°
O34C03C02H031122.0°122.6°
O34C03C04C05149.1°119.7°
O34C03C04O3393.1°120.7°
O34C03C02O3510.6°20.3°
O34C03C02C01103.3°97.9°
O34C03C02H021139.1°144.0°
O34C03C04H04126.9°1.2°
C04C03C02H031115.8°118.7°
C03C04C05O33117.8°118.0°
C03C04C05H041122.1°120.9°
C03C04O33H041119.2°119.5°
C03C04C05O06178.9°175.0°
C04C03C02O35132.8°139.1°
C03C04O33C0126.4°26.3°
C04C03C02C0118.9°20.9°
C04C03C02H02198.8°97.3°
C03C04C05H361.4°54.9°
C03C04C05H459.3°65.0°
C04C03O34H19180.0°180.0°
C02C03C04C0589.2°121.5°
C02C03C04O3328.6°1.9°
C03C02O35C01111.8°112.7°
C03C02O35H021127.7°123.7°
C03C02C01O333.8°36.9°
C03C02C01H021117.8°118.2°
C03C02C01N36131.9°155.5°
C03C02C01H011113.1°81.6°
C02C03C04H041148.6°117.6°
C02C03O34H1963.0°65.1°
C03C02O35H20180.0°67.3°
C05C04O33H041119.5°121.0°
C04C05O06H3119.6°120.1°
C04C05O06H4119.6°120.0°
C05C04O33C0194.8°145.8°
C04C05O06P07162.6°180.0°
C05C04C03H03126.7°2.9°
C04C05H3H4121.1°120.0°
O33C04C05O0661.1°67.0°
C04O33C01C0214.0°39.8°
C04O33C01N36115.3°158.4°
C04O33C01H011129.9°78.7°
O33C04C03H031144.4°116.7°
O33C04C05H3179.3°172.9°
O33C04C05H458.5°53.0°
O32P07O06C0540.9°55.0°
O32P07O06O31126.1°120.0°
O32P07O06O08117.8°120.0°
O32P07O31O08132.4°120.0°
O32P07O08P0960.1°40.0°
O32P07O31H180.0°180.0°
C05O06P07O31167.0°65.0°
C05O06P07O0877.0°175.0°
O06C05C04H04159.0°54.1°
O06C05H3H4121.2°119.9°
O35C02C01O33124.6°155.1°
O35C02C01H021121.4°123.6°
O35C02C01N36107.2°86.3°
O35C02C01H0117.8°36.6°
O35C02C03H031111.4°102.3°
O33C01C02N36128.1°118.6°
O33C01C02H011116.9°118.5°
O33C01N36H011116.0°122.9°
O33C01N36C3711.2°143.6°
O33C01N36C41175.2°36.9°
O33C01C02H021114.0°81.3°
C01O33C04H041145.6°93.2°
O06P07O31O08103.2°120.0°
O06P07O08P09176.0°160.0°
P07O06C05H343.0°59.9°
P07O06C05H477.8°60.0°
O06P07O31H18124.4°60.0°
O31P07O08P0972.6°80.0°
C02C01N36H011115.3°122.9°
C02C01N36C37140.0°102.2°
C02C01N36C4146.5°77.3°
C01C02C03H031134.7°139.6°
C01C02O35H2068.2°180.0°
P07O08P09O3040.9°40.0°
P07O08P09O1083.1°80.0°
P07O08P09O11156.7°160.0°
O08P07O31H18132.4°60.0°
C01N36C37C41173.2°179.5°
C01N36C37C38175.3°180.0°
C01N36C41C40174.7°179.9°
N36C01C02H02114.1°37.3°
C01N36C37H84.7°0.2°
C01N36C41H105.3°0.2°
O08P09O30O10125.2°120.0°
O08P09O30O11111.6°120.0°
O08P09O10O11116.9°120.1°
O08P09O11C12130.6°175.0°
O08P09O10H1119.9°60.0°
N36C37C38H8180.0°179.8°
C37N36C41C401.5°0.6°
N36C37C38C45179.2°179.7°
N36C37C38C391.9°0.2°
C37N36C01H011104.8°20.7°
C37N36C41H10178.6°179.7°
C41N36C37C382.1°0.5°
N36C41C40H10180.0°179.7°
N36C41C40C390.6°0.3°
C41N36C01H01168.8°159.8°
C41N36C37H8177.9°179.7°
N36C41C40H9179.5°179.7°
C37C38C45C39178.9°180.0°
C37C38C39C401.1°0.0°
C37C38C45C44178.7°180.0°
C37C38C39C42179.4°180.0°
C37C38C45H131.2°0.1°
O30P09O10O11123.2°120.0°
O30P09O11C1218.5°55.0°
O30P09O10H10.0°180.0°
O10P09O11C12106.2°65.0°
P09O11C12C13105.4°180.0°
O11P09O10H1123.2°60.0°
P09O11C12H5135.6°60.0°
P09O11C12H613.6°60.0°
C41C40C39C380.4°0.0°
C41C40C39H9180.0°179.9°
C41C40C39C42179.9°180.0°
C45C38C39C40180.0°180.0°
C38C45C44H13180.0°179.9°
C45C38C39C420.6°0.0°
C38C45C44C431.5°0.1°
C45C38C37H80.8°0.0°
C38C45C44H12178.5°180.0°
C38C39C40C42179.4°180.0°
C39C38C45C440.2°0.1°
C38C39C42C430.1°0.0°
C38C39C42I46179.5°180.0°
C39C38C37H8178.1°180.0°
C38C39C40H9179.6°180.0°
C39C38C45H13179.9°180.0°
O11C12C13H5119.0°120.0°
O11C12C13H6119.0°120.0°
O11C12C13O1766.9°66.4°
O11C12C13C14175.2°175.7°
O11C12C13H13154.4°54.6°
O11C12H5H6122.9°120.0°
C40C39C42C43179.4°180.0°
C40C39C42I460.1°0.0°
C39C40C41H10179.5°180.0°
C45C44C43H12180.0°179.9°
C45C44C43C422.1°0.0°
C45C44C43H11177.9°179.9°
C39C42C43C441.4°0.0°
C39C42C43I46179.5°180.0°
C42C39C40H90.1°0.0°
C39C42C43H11178.6°179.9°
C12C13O17C14117.6°119.5°
C12C13O17H131120.7°121.1°
C12C13C14H131120.8°121.1°
C12C13C14O2992.8°119.8°
C12C13O17C16142.2°145.9°
C12C13C14C15149.4°121.4°
C13C12H5H6122.8°120.0°
C12C13C14H14131.5°2.8°
C44C43C42H11180.0°179.9°
C44C43C42I46179.1°180.0°
C43C44C45H13178.5°180.0°
O17C13C14H131122.2°119.4°
O17C13C14O29150.2°120.7°
O17C13C14C1532.4°2.0°
C13O17C16C156.3°40.0°
C13O17C16N18129.0°158.6°
C13O17C16H161112.6°78.6°
O17C13C12H552.1°173.6°
O17C13C12H6174.1°53.6°
O17C13C14H14185.4°116.7°
C13C14O29C15111.3°114.8°
C13C14O29H141123.5°122.6°
C14C13O17C1624.5°26.4°
C13C14C15H141117.9°118.6°
C13C14C15C1626.3°20.9°
C13C14C15O2891.4°139.1°
C13C14C15H151144.3°97.3°
C14C13C12H565.8°55.7°
C14C13C12H656.2°64.3°
C13C14O29H17180.0°180.0°
C42C43C44H12177.8°179.9°
I46C42C43H110.9°0.1°
O29C14C15H141126.0°122.7°
O29C14C15C16142.5°97.7°
O29C14C15O2824.7°20.4°
O29C14C13H13128.0°1.3°
O29C14C15H15199.6°144.0°
O17C16C15C1413.6°37.1°
O17C16C15N18120.9°118.5°
O17C16C15H161119.9°118.7°
O17C16N18H161118.9°123.0°
O17C16C15O28103.9°155.2°
O17C16N18C1982.7°19.2°
O17C16N18C2297.7°160.9°
C16O17C13H13197.1°93.0°
O17C16C15H151131.8°81.3°
C14C15C16O28117.6°118.2°
C14C15C16H151118.1°118.3°
C14C15C16N18107.3°155.6°
C14C15O28H151123.5°123.7°
C15C14C13H13189.8°117.4°
C14C15C16H161133.5°81.6°
C14C15O28H16180.0°64.3°
C15C14O29H1768.7°65.3°
C15C16N18H161118.7°122.9°
C16C15O28H151123.4°123.6°
C15C16N18C1939.7°94.9°
C15C16N18C22139.9°85.0°
C16C15C14H14191.6°139.5°
C16C15O28H1666.9°177.0°
N18C16C15O28135.1°86.3°
C16N18C19C22179.6°179.9°
C16N18C19N20180.0°179.9°
C16N18C22N230.4°0.2°
C16N18C22C21179.4°179.7°
N18C16C15H15110.8°37.2°
C16N18C19H20.0°0.3°
O28C15C16H16115.9°36.6°
O28C15C14H141150.7°102.3°
N18C19N20H2180.0°179.8°
C19N18C22N23179.9°179.8°
C19N18C22C210.2°0.3°
N18C19N20C210.7°0.3°
C19N18C16H161158.4°142.2°
C22N18C19N200.3°0.0°
N18C22N23C21179.9°179.9°
N18C22N23C24179.9°180.0°
N18C22C21N200.7°0.4°
N18C22C21C26179.5°179.9°
C22N18C16H16121.1°37.9°
C22N18C19H2179.7°179.8°
C19N20C21C220.9°0.4°
C19N20C21C26179.4°179.8°
N23C22C21N20179.4°179.6°
N23C22C21C260.4°0.1°
C22N23C24N250.6°0.1°
C22N23C24H7179.4°179.9°
C21C22N23C240.0°0.1°
C22C21N20C26179.7°179.4°
C22C21C26N250.2°0.1°
C22C21C26N27179.3°179.9°
N23C24N25H7180.0°179.9°
N23C24N25C260.8°0.1°
N20C21C26N25179.5°179.4°
N20C21C26N271.0°0.6°
C21N20C19H2179.3°179.9°
C21C26N25C240.4°0.1°
C21C26N25N27179.4°180.0°
C21C26N27H14179.4°0.1°
C21C26N27H1560.6°179.9°
C24N25C26N27179.8°179.9°
C26N25C24H7179.2°180.0°
N25C26N27H140.0°179.9°
N25C26N27H15120.0°0.1°
C26N27H14H15120.0°180.0°
H131C13C12H5173.4°65.4°
H131C13C12H664.6°174.6°
H131C13C14H141152.4°123.9°
H151C15C16H161108.4°160.1°
H151C15C14H14126.4°21.3°
H151C15O28H1656.5°59.4°
H011C01C02H021129.1°160.2°
H021C02C03H03117.0°21.4°
H021C02O35H2052.2°56.4°
H031C03C04H04195.6°123.9°
H031C03O34H1958.3°57.3°
H041C04C05H360.7°66.0°
H041C04C05H4178.6°174.0°
H141C14O29H1756.5°57.4°
H9C40C41H100.5°0.1°
H11C43C44H122.1°0.0°
H12C44C45H131.5°0.1°

222926

PDB entries from 2024-07-24

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