Summary Geometry PCM/PTM Related PDB entries

1PT

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
PT	N1	sing	2.02Å	2.03Å
PT	N2	sing	2.02Å	2.02Å
N1	C1	sing	1.47Å	1.54Å
N1	H11	sing	0.89Å	1.00Å
N1	H12	sing	0.89Å	1.00Å
N2	C2	sing	1.47Å	1.54Å
N2	H21	sing	0.89Å	1.00Å
N2	H22	sing	0.89Å	1.00Å
C1	C2	sing	1.56Å	1.52Å
C1	C6	sing	1.53Å	1.49Å
C1	H1	sing	0.99Å	1.10Å
C2	C3	sing	1.54Å	1.50Å
C2	H2	sing	0.99Å	1.10Å
C3	C4	sing	1.53Å	1.51Å
C3	H31	sing	0.98Å	1.10Å
C3	H32	sing	0.98Å	1.10Å
C4	C5	sing	1.53Å	1.61Å
C4	H41	sing	0.98Å	1.10Å
C4	H42	sing	0.98Å	1.10Å
C5	C6	sing	1.53Å	1.57Å
C5	H51	sing	0.98Å	1.10Å
C5	H52	sing	0.98Å	1.10Å
C6	H61	sing	0.98Å	1.10Å
C6	H62	sing	0.98Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N1	PT	N2	85.7°	88.2°
PT	N1	C1	108.4°	105.0°
PT	N1	H11	109.8°	112.5°
PT	N1	H12	109.7°	107.2°
PT	N2	C2	108.2°	105.0°
PT	N2	H21	109.8°	112.6°
PT	N2	H22	109.8°	107.2°
C1	N1	H11	109.8°	111.3°
C1	N1	H12	109.7°	113.2°
N1	C1	C2	106.8°	108.3°
N1	C1	C6	112.9°	113.1°
N1	C1	H1	108.3°	108.0°
H11	N1	H12	109.5°	107.6°
C2	N2	H21	109.8°	111.3°
C2	N2	H22	109.8°	113.1°
N2	C2	C1	107.2°	108.2°
N2	C2	C3	112.7°	113.1°
N2	C2	H2	108.3°	108.0°
H21	N2	H22	109.5°	107.6°
C2	C1	C6	111.1°	111.0°
C2	C1	H1	108.7°	108.3°
C1	C2	C3	111.2°	111.0°
C1	C2	H2	108.6°	108.3°
C6	C1	H1	109.0°	108.0°
C1	C6	C5	110.9°	113.2°
C1	C6	H61	109.1°	108.7°
C1	C6	H62	109.1°	109.0°
C3	C2	H2	108.8°	108.0°
C2	C3	C4	110.7°	113.2°
C2	C3	H31	109.2°	108.7°
C2	C3	H32	109.2°	109.0°
C4	C3	H31	109.2°	109.0°
C4	C3	H32	109.2°	109.2°
C3	C4	C5	111.4°	112.1°
C3	C4	H41	109.0°	109.3°
C3	C4	H42	109.0°	109.1°
H31	C3	H32	109.5°	107.6°
C5	C4	H41	109.0°	109.2°
C5	C4	H42	109.0°	109.1°
C4	C5	C6	106.9°	112.2°
C4	C5	H51	110.1°	109.2°
C4	C5	H52	110.1°	109.3°
H41	C4	H42	109.5°	107.8°
C6	C5	H51	110.1°	109.1°
C6	C5	H52	110.1°	109.2°
C5	C6	H61	109.1°	109.0°
C5	C6	H62	109.1°	109.2°
H51	C5	H52	109.5°	107.8°
H61	C6	H62	109.4°	107.6°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
PT	N1	C1	H11	119.8°	122.0°
PT	N1	C1	H12	119.8°	116.6°
PT	N1	H11	H12	120.5°	117.9°
N1	PT	N2	C2	14.3°	15.0°
N1	PT	N2	H21	105.5°	136.3°
N1	PT	N2	H22	134.1°	105.5°
PT	N1	C1	C2	40.5°	40.9°
PT	N1	C1	C6	162.9°	164.4°
PT	N1	C1	H1	76.3°	76.2°
N2	PT	N1	C1	14.4°	15.0°
N2	PT	N1	H11	105.5°	136.3°
N2	PT	N1	H12	134.2°	105.6°
PT	N2	C2	H21	119.8°	122.1°
PT	N2	C2	H22	119.8°	116.6°
PT	N2	H21	H22	120.6°	118.0°
PT	N2	C2	C1	40.7°	40.9°
PT	N2	C2	C3	163.3°	164.3°
PT	N2	C2	H2	76.3°	76.2°
C1	N1	H11	H12	120.5°	124.6°
N1	C1	C2	N2	53.0°	57.0°
N1	C1	C2	C6	123.5°	124.7°
N1	C1	C2	H1	116.6°	116.9°
N1	C1	C6	H1	120.4°	119.5°
N1	C1	C2	C3	176.6°	178.3°
N1	C1	C2	H2	63.8°	59.9°
N1	C1	C6	C5	180.0°	175.6°
N1	C1	C6	H61	59.8°	63.1°
N1	C1	C6	H62	59.8°	54.0°
H11	N1	C1	C2	79.3°	163.0°
H11	N1	C1	C6	43.0°	73.6°
H11	N1	C1	H1	163.8°	45.9°
H12	N1	C1	C2	160.3°	75.6°
H12	N1	C1	C6	77.3°	47.8°
H12	N1	C1	H1	43.5°	167.3°
C2	N2	H21	H22	120.5°	124.5°
N2	C2	C1	C3	123.6°	124.7°
N2	C2	C1	H2	116.8°	116.9°
N2	C2	C1	C6	176.5°	178.3°
N2	C2	C1	H1	63.6°	59.9°
N2	C2	C3	H2	120.1°	119.5°
N2	C2	C3	C4	178.5°	175.7°
N2	C2	C3	H31	58.3°	63.1°
N2	C2	C3	H32	61.4°	53.9°
H21	N2	C2	C1	79.2°	163.0°
H21	N2	C2	C3	43.5°	73.6°
H21	N2	C2	H2	163.9°	45.9°
H22	N2	C2	C1	160.5°	75.7°
H22	N2	C2	C3	76.9°	47.8°
H22	N2	C2	H2	43.5°	167.2°
C2	C1	C6	H1	119.7°	118.6°
C1	C2	C3	H2	119.5°	118.6°
C1	C2	C3	C4	58.1°	53.8°
C1	C2	C3	H31	62.1°	175.0°
C1	C2	C3	H32	178.3°	67.9°
C2	C1	C6	C5	60.0°	53.7°
C2	C1	C6	H61	60.2°	175.0°
C2	C1	C6	H62	179.7°	68.0°
C6	C1	C2	C3	59.9°	53.6°
C6	C1	C2	H2	59.7°	64.9°
C1	C6	C5	C4	56.4°	52.5°
C1	C6	C5	H61	120.2°	121.2°
C1	C6	C5	H62	120.2°	121.5°
C1	C6	C5	H51	63.2°	173.6°
C1	C6	C5	H52	176.0°	68.8°
C1	C6	H61	H62	119.3°	117.9°
H1	C1	C2	C3	59.9°	64.8°
H1	C1	C2	H2	179.6°	176.8°
H1	C1	C6	C5	59.6°	64.9°
H1	C1	C6	H61	179.9°	56.4°
H1	C1	C6	H62	60.6°	173.5°
C2	C3	C4	H31	120.2°	121.1°
C2	C3	C4	H32	120.2°	121.6°
C2	C3	H31	H32	119.4°	117.9°
C2	C3	C4	C5	57.1°	52.6°
C2	C3	C4	H41	177.4°	68.7°
C2	C3	C4	H42	63.2°	173.6°
H2	C2	C3	C4	61.4°	64.9°
H2	C2	C3	H31	178.4°	56.4°
H2	C2	C3	H32	58.8°	173.4°
C4	C3	H31	H32	119.5°	118.4°
C3	C4	C5	H41	120.3°	121.3°
C3	C4	C5	H42	120.3°	121.0°
C3	C4	H41	H42	119.1°	118.5°
C3	C4	C5	C6	55.3°	51.0°
C3	C4	C5	H51	64.3°	172.0°
C3	C4	C5	H52	174.8°	70.3°
H31	C3	C4	C5	63.1°	173.7°
H31	C3	C4	H41	57.2°	52.4°
H31	C3	C4	H42	176.6°	65.3°
H32	C3	C4	C5	177.2°	69.0°
H32	C3	C4	H41	62.5°	169.8°
H32	C3	C4	H42	56.9°	52.0°
C5	C4	H41	H42	119.1°	118.5°
C4	C5	C6	H51	119.6°	121.1°
C4	C5	C6	H52	119.6°	121.3°
C4	C5	H51	H52	121.2°	118.6°
C4	C5	C6	H61	63.8°	173.7°
C4	C5	C6	H62	176.7°	69.0°
H41	C4	C5	C6	175.6°	70.3°
H41	C4	C5	H51	56.0°	50.7°
H41	C4	C5	H52	64.8°	168.4°
H42	C4	C5	C6	65.0°	172.0°
H42	C4	C5	H51	175.4°	67.0°
H42	C4	C5	H52	54.6°	50.7°
C6	C5	H51	H52	121.2°	118.5°
C5	C6	H61	H62	119.4°	118.3°
H51	C5	C6	H61	176.6°	65.2°
H51	C5	C6	H62	57.1°	52.1°
H52	C5	C6	H61	55.8°	52.4°
H52	C5	C6	H62	63.8°	169.7°

Definition date:	2003-06-03
Last modified:	2026-07-31
Release status:	REL
Processing site:	RCSB
Derived from:	1PG9