English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

1P8

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
BR1	C2	sing	1.89Å	1.89Å
C3	C2	doub	1.38Å	1.38Å	Aromatic
C3	C4	sing	1.38Å	1.38Å	Aromatic
C2	C11	sing	1.38Å	1.38Å	Aromatic
C4	C5	doub	1.38Å	1.38Å	Aromatic
C11	C10	doub	1.39Å	1.40Å	Aromatic
C5	C10	sing	1.39Å	1.39Å	Aromatic
C5	C6	sing	1.51Å	1.51Å
C10	N9	sing	1.40Å	1.40Å
C6	C7	sing	1.51Å	1.51Å
N9	C7	sing	1.34Å	1.35Å
C7	O8	doub	1.21Å	1.22Å
C6	H1	sing	1.09Å	1.10Å
C6	H2	sing	1.09Å	1.10Å
N9	H3	sing	0.97Å	1.00Å
C11	H4	sing	1.08Å	1.08Å
C4	H5	sing	1.08Å	1.08Å
C3	H6	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
BR1	C2	C3	118.3°	119.8°
BR1	C2	C11	120.2°	119.8°
C2	C3	C4	119.4°	119.8°
C3	C2	C11	121.5°	120.4°
C2	C3	H6	120.3°	120.1°
C3	C4	C5	119.6°	119.9°
C3	C4	H5	120.2°	120.1°
C4	C3	H6	120.3°	120.1°
C2	C11	C10	119.1°	120.1°
C2	C11	H4	120.4°	120.0°
C4	C5	C10	121.6°	120.8°
C4	C5	C6	132.1°	132.9°
C5	C4	H5	120.2°	120.0°
C11	C10	C5	118.7°	119.0°
C11	C10	N9	131.2°	130.8°
C10	C11	H4	120.4°	120.0°
C10	C5	C6	106.3°	106.3°
C5	C10	N9	110.1°	110.3°
C5	C6	C7	104.6°	104.1°
C5	C6	H1	110.7°	110.5°
C5	C6	H2	110.7°	110.6°
C10	N9	C7	112.1°	112.2°
C10	N9	H3	123.9°	123.9°
C6	C7	N9	106.9°	107.1°
C6	C7	O8	125.9°	126.4°
C7	C6	H1	110.7°	110.5°
C7	C6	H2	110.7°	110.5°
N9	C7	O8	127.1°	126.4°
C7	N9	H3	123.9°	123.9°
H1	C6	H2	109.5°	110.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
BR1	C2	C3	C11	179.6°	180.0°
BR1	C2	C3	C4	179.6°	179.8°
BR1	C2	C11	C10	179.9°	179.9°
BR1	C2	C11	H4	0.1°	0.0°
BR1	C2	C3	H6	0.4°	0.0°
C2	C3	C4	H6	180.0°	179.8°
C2	C3	C4	C5	0.3°	0.2°
C3	C2	C11	C10	0.5°	0.1°
C3	C2	C11	H4	179.6°	180.0°
C2	C3	C4	H5	179.7°	179.8°
C4	C3	C2	C11	0.8°	0.1°
C3	C4	C5	H5	180.0°	180.0°
C3	C4	C5	C10	0.4°	0.0°
C3	C4	C5	C6	179.8°	179.9°
C2	C11	C10	H4	180.0°	179.9°
C2	C11	C10	C5	0.3°	0.3°
C2	C11	C10	N9	179.8°	180.0°
C11	C2	C3	H6	179.2°	180.0°
C4	C5	C10	C11	0.7°	0.2°
C4	C5	C10	C6	179.5°	180.0°
C4	C5	C10	N9	179.4°	180.0°
C4	C5	C6	C7	179.8°	179.8°
C4	C5	C6	H1	61.0°	61.2°
C4	C5	C6	H2	60.6°	61.5°
C5	C4	C3	H6	179.7°	180.0°
C11	C10	C5	N9	179.9°	179.8°
C11	C10	C5	C6	179.8°	179.8°
C11	C10	N9	C7	179.3°	179.9°
C11	C10	N9	H3	0.7°	0.0°
C10	C5	C6	C7	0.3°	0.1°
C5	C10	N9	C7	0.6°	0.2°
C10	C5	C6	H1	119.5°	118.8°
C10	C5	C6	H2	118.9°	118.6°
C5	C10	N9	H3	179.4°	179.8°
C5	C10	C11	H4	179.7°	179.8°
C10	C5	C4	H5	179.6°	180.0°
C6	C5	C10	N9	0.1°	0.0°
C5	C6	C7	H1	119.2°	118.6°
C5	C6	C7	H2	119.2°	118.8°
C5	C6	C7	N9	0.7°	0.2°
C5	C6	C7	O8	180.0°	180.0°
C5	C6	H1	H2	122.3°	122.7°
C6	C5	C4	H5	0.2°	0.0°
C10	N9	C7	C6	0.8°	0.2°
C10	N9	C7	H3	180.0°	179.9°
C10	N9	C7	O8	179.9°	180.0°
N9	C10	C11	H4	0.2°	0.1°
C6	C7	N9	O8	179.3°	179.8°
C7	C6	H1	H2	122.3°	122.6°
C6	C7	N9	H3	179.2°	179.7°
N9	C7	C6	H1	119.9°	118.9°
N9	C7	C6	H2	118.5°	118.6°
O8	C7	C6	H1	60.8°	61.4°
O8	C7	C6	H2	60.8°	61.2°
O8	C7	N9	H3	0.2°	0.1°
H5	C4	C3	H6	0.4°	0.0°

246704

PDB entries from 2025-12-24

PDB statistics

PDBj update info

Contact PDBj

numon