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Summary Geometry Related PDB entries

1P7

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
CL1	C2	sing	1.74Å	1.74Å
C3	C2	doub	1.38Å	1.39Å	Aromatic
C3	C4	sing	1.39Å	1.39Å	Aromatic
C2	C11	sing	1.38Å	1.38Å	Aromatic
C4	C5	doub	1.38Å	1.38Å	Aromatic
C11	C10	doub	1.40Å	1.40Å	Aromatic
C5	C10	sing	1.40Å	1.40Å	Aromatic
C5	C6	sing	1.51Å	1.51Å
C10	C8	sing	1.48Å	1.47Å
C6	N7	sing	1.47Å	1.47Å
C8	N7	sing	1.34Å	1.36Å
C8	O9	doub	1.22Å	1.22Å
C6	H1	sing	1.09Å	1.10Å
C11	H2	sing	1.08Å	1.08Å
C4	H3	sing	1.08Å	1.08Å
C3	H4	sing	1.08Å	1.08Å
N7	H5	sing	0.97Å	1.00Å
C6	H6	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CL1	C2	C3	120.4°	119.8°
CL1	C2	C11	118.9°	119.9°
C2	C3	C4	120.6°	120.2°
C3	C2	C11	120.7°	120.3°
C2	C3	H4	119.7°	119.9°
C3	C4	C5	119.3°	119.9°
C3	C4	H3	120.3°	120.0°
C4	C3	H4	119.7°	119.9°
C2	C11	C10	118.6°	119.8°
C2	C11	H2	120.7°	120.1°
C4	C5	C10	120.2°	120.3°
C4	C5	C6	133.0°	133.2°
C5	C4	H3	120.3°	120.1°
C11	C10	C5	120.5°	119.4°
C11	C10	C8	131.0°	132.3°
C10	C11	H2	120.7°	120.1°
C10	C5	C6	106.9°	106.5°
C5	C10	C8	108.4°	108.3°
C5	C6	N7	105.6°	106.2°
C5	C6	H1	110.4°	110.1°
C5	C6	H6	110.4°	110.2°
C10	C8	N7	110.1°	110.3°
C10	C8	O9	123.1°	124.8°
C6	N7	C8	109.0°	108.8°
N7	C6	H1	110.4°	110.1°
C6	N7	H5	125.5°	125.6°
N7	C6	H6	110.4°	110.1°
N7	C8	O9	126.8°	124.9°
C8	N7	H5	125.5°	125.6°
H1	C6	H6	109.4°	110.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CL1	C2	C3	C11	179.8°	179.9°
CL1	C2	C3	C4	179.9°	179.5°
CL1	C2	C11	C10	179.8°	180.0°
CL1	C2	C11	H2	0.2°	0.1°
CL1	C2	C3	H4	0.1°	0.0°
C2	C3	C4	H4	180.0°	179.4°
C2	C3	C4	C5	0.1°	0.6°
C3	C2	C11	C10	0.0°	0.0°
C3	C2	C11	H2	180.0°	179.9°
C2	C3	C4	H3	179.9°	179.6°
C4	C3	C2	C11	0.1°	0.5°
C3	C4	C5	H3	180.0°	179.9°
C3	C4	C5	C10	0.0°	0.1°
C3	C4	C5	C6	179.8°	179.3°
C2	C11	C10	H2	180.0°	179.9°
C2	C11	C10	C5	0.0°	0.5°
C2	C11	C10	C8	179.8°	180.0°
C11	C2	C3	H4	179.9°	179.9°
C4	C5	C10	C11	0.0°	0.4°
C4	C5	C10	C6	179.9°	179.6°
C4	C5	C10	C8	179.8°	180.0°
C4	C5	C6	N7	179.7°	179.8°
C4	C5	C6	H1	60.3°	61.0°
C5	C4	C3	H4	179.9°	180.0°
C4	C5	C6	H6	60.9°	60.6°
C11	C10	C5	C8	179.8°	179.6°
C11	C10	C5	C6	179.9°	180.0°
C11	C10	C8	N7	179.8°	180.0°
C11	C10	C8	O9	0.1°	0.3°
C10	C5	C6	N7	0.1°	0.2°
C5	C10	C8	N7	0.0°	0.4°
C5	C10	C8	O9	179.9°	179.9°
C10	C5	C6	H1	119.5°	119.4°
C5	C10	C11	H2	180.0°	179.6°
C10	C5	C4	H3	179.9°	180.0°
C10	C5	C6	H6	119.3°	119.0°
C6	C5	C10	C8	0.1°	0.4°
C5	C6	N7	H1	119.4°	119.2°
C5	C6	N7	H6	119.4°	119.3°
C5	C6	N7	C8	0.1°	0.0°
C5	C6	H1	H6	121.8°	121.7°
C6	C5	C4	H3	0.2°	0.5°
C5	C6	N7	H5	179.9°	180.0°
C10	C8	N7	C6	0.1°	0.3°
C10	C8	N7	O9	179.9°	179.7°
C8	C10	C11	H2	0.3°	0.1°
C10	C8	N7	H5	179.9°	179.8°
C6	N7	C8	H5	180.0°	179.9°
C6	N7	C8	O9	180.0°	180.0°
N7	C6	H1	H6	121.8°	121.5°
C8	N7	C6	H1	119.5°	119.2°
C8	N7	C6	H6	119.3°	119.3°
O9	C8	N7	H5	0.0°	0.1°
H1	C6	N7	H5	60.5°	60.7°
H3	C4	C3	H4	0.1°	0.1°
H5	N7	C6	H6	60.7°	60.8°

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PDB entries from 2024-08-07

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