Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1ND

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OC15doub1.22Å1.22Å
C1F1sing1.40Å1.31Å
C1C2sing1.51Å1.50Å
C1F2sing1.40Å1.31Å
C1F3sing1.40Å1.31Å
N1C2doub1.31Å1.35ÅAromatic
N1N2sing1.40Å1.39ÅAromatic
C2C8sing1.39Å1.40ÅAromatic
N2C3sing1.35Å1.33ÅAromatic
N2C9sing1.40Å1.34ÅAromatic
C3C4sing1.51Å1.51Å
C3C8doub1.36Å1.39ÅAromatic
N3C15sing1.35Å1.35Å
N3C16sing1.47Å1.46Å
N3C19sing1.47Å1.45Å
C4C5sing1.53Å1.52Å
C5C6sing1.53Å1.52Å
C6C7sing1.53Å1.52Å
C7C8sing1.51Å1.51Å
C9C10doub1.39Å1.40ÅAromatic
C9C14sing1.39Å1.39ÅAromatic
C10C11sing1.38Å1.40ÅAromatic
C11C12doub1.40Å1.39ÅAromatic
C12C13sing1.40Å1.38ÅAromatic
C12C15sing1.48Å1.50Å
C13C14doub1.38Å1.38ÅAromatic
C16C17sing1.54Å1.52Å
C17C18sing1.55Å1.51Å
C18C19sing1.55Å1.51Å
C4H4sing1.09Å1.10Å
C4H4Asing1.09Å1.10Å
C5H5sing1.09Å1.10Å
C5H5Asing1.09Å1.10Å
C6H6sing1.09Å1.10Å
C6H6Asing1.09Å1.10Å
C7H7sing1.09Å1.10Å
C7H7Asing1.09Å1.10Å
C10H10sing1.08Å1.08Å
C11H11sing1.08Å1.08Å
C13H13sing1.08Å1.08Å
C14H14sing1.08Å1.08Å
C16H16sing1.09Å1.10Å
C16H16Asing1.09Å1.10Å
C17H17sing1.09Å1.10Å
C17H17Asing1.09Å1.10Å
C18H18sing1.09Å1.10Å
C18H18Asing1.09Å1.10Å
C19H19sing1.09Å1.10Å
C19H19Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OC15N3122.5°120.0°
OC15C12118.0°120.0°
F1C1C2112.3°109.5°
F1C1F2107.9°109.5°
F1C1F3108.1°109.5°
C2C1F2109.8°109.5°
C2C1F3109.6°109.4°
C1C2N1115.4°125.8°
C1C2C8133.7°125.9°
F2C1F3109.0°109.5°
C2N1N2102.8°108.3°
N1C2C8110.9°108.2°
N1N2C3114.2°107.7°
N1N2C9122.7°126.1°
C2C8C3107.0°108.1°
C2C8C7129.6°127.9°
C3N2C9123.1°126.2°
N2C3C4130.9°128.1°
N2C3C8105.0°107.7°
N2C9C10123.6°119.9°
N2C9C14121.1°120.0°
C4C3C8124.2°124.2°
C3C4C5104.2°108.4°
C3C4H4111.3°109.7°
C3C4H4A112.4°109.7°
C3C8C7123.4°124.1°
C15N3C16124.0°125.7°
C15N3C19122.7°125.7°
N3C15C12119.4°120.0°
C16N3C19113.2°108.7°
N3C16C17103.6°107.3°
N3C16H16111.5°109.9°
N3C16H16A112.7°109.8°
N3C19C18103.0°104.8°
N3C19H19111.7°110.4°
N3C19H19A113.1°110.3°
C4C5C6109.0°109.5°
C5C4H4111.3°109.6°
C5C4H4A112.4°109.7°
C4C5H5109.6°109.5°
C4C5H5A109.7°109.4°
C5C6C7111.1°109.5°
C6C5H5109.6°109.5°
C6C5H5A109.7°109.5°
C5C6H6108.9°109.4°
C5C6H6A108.6°109.4°
C6C7C8109.3°108.4°
C7C6H6108.9°109.5°
C7C6H6A108.6°109.5°
C6C7H7109.5°109.6°
C6C7H7A109.6°109.7°
C8C7H7109.5°109.7°
C8C7H7A109.6°109.7°
C10C9C14115.2°120.1°
C9C10C11122.7°120.1°
C9C10H10118.6°119.9°
C9C14C13123.4°120.1°
C9C14H14118.3°119.9°
C10C11C12119.6°119.9°
C11C10H10118.7°120.0°
C10C11H11120.2°120.1°
C11C12C13119.1°119.8°
C11C12C15121.5°120.1°
C12C11H11120.2°120.0°
C13C12C15119.4°120.1°
C12C13C14119.7°119.9°
C12C13H13120.1°120.1°
C14C13H13120.1°120.0°
C13C14H14118.3°120.0°
C16C17C18105.8°103.0°
C17C16H16111.5°109.9°
C17C16H16A112.7°109.9°
C16C17H17110.7°110.7°
C16C17H17A111.5°110.8°
C17C18C19104.6°101.4°
C18C17H17110.7°110.7°
C18C17H17A111.5°110.7°
C17C18H18111.1°111.0°
C17C18H18A112.1°111.0°
C19C18H18111.1°111.2°
C19C18H18A112.2°110.9°
C18C19H19111.7°110.5°
C18C19H19A113.1°110.3°
H4C4H4A105.4°109.7°
H5C5H5A109.1°109.5°
H6C6H6A110.8°109.5°
H7C7H7A109.3°109.7°
H16C16H16A105.0°110.0°
H17C17H17A106.7°110.8°
H18C18H18A105.8°110.9°
H19C19H19A104.6°110.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OC15N3C12178.1°180.0°
OC15N3C1629.7°6.8°
OC15N3C19147.3°173.4°
OC15C12C1154.1°19.7°
OC15C12C13124.7°160.3°
F1C1C2F2120.1°120.1°
F1C1C2F3120.2°120.0°
F1C1F2F3117.2°120.0°
F1C1C2N150.1°5.1°
F1C1C2C8129.2°175.0°
C2C1F2F3120.1°119.9°
C1C2N1C8179.5°179.9°
C1C2N1N2179.5°179.9°
C1C2C8C3179.7°179.9°
C1C2C8C70.1°0.2°
F2C1C2N170.0°115.0°
F2C1C2C8110.7°64.9°
F3C1C2N1170.4°125.0°
F3C1C2C89.0°55.1°
C2N1N2C30.8°0.1°
C2N1N2C9179.5°179.9°
N1C2C8C30.9°0.0°
N1C2C8C7179.5°179.9°
N2N1C2C81.0°0.0°
N1N2C3C9179.7°180.0°
N1N2C3C4179.1°179.8°
N1N2C3C80.3°0.1°
N1N2C9C10137.2°137.8°
N1N2C9C1438.2°41.9°
C2C8C3N20.4°0.1°
C2C8C3C4179.8°179.9°
C2C8C3C7179.7°179.9°
C2C8C7C6174.0°163.3°
C2C8C7H754.0°43.6°
C2C8C7H7A65.9°76.9°
N2C3C4C8179.2°180.0°
N2C3C4C5152.7°163.5°
N2C3C8C7180.0°179.8°
C3N2C9C1043.2°42.3°
C3N2C9C14141.4°138.1°
N2C3C4H487.3°76.9°
N2C3C4H4A30.7°43.7°
C9N2C3C40.6°0.1°
C9N2C3C8179.9°179.9°
N2C9C10C14175.7°179.7°
N2C9C10C11177.4°180.0°
N2C9C14C13178.0°179.8°
N2C9C10H102.6°0.1°
N2C9C14H142.0°0.0°
C3C4C5H4120.0°119.7°
C3C4C5H4A122.0°119.8°
C3C4C5C660.3°49.9°
C4C3C8C70.6°0.2°
C3C4H4H4A122.1°120.6°
C3C4C5H5179.7°169.9°
C3C4C5H5A59.9°70.1°
C8C3C4C526.6°16.5°
C3C8C7C65.6°16.6°
C8C3C4H493.4°103.2°
C8C3C4H4A148.5°136.2°
C3C8C7H7125.6°136.3°
C3C8C7H7A114.5°103.2°
C15N3C16C19177.3°179.8°
N3C15C12C11124.1°160.3°
N3C15C12C1357.1°19.7°
C15N3C16C17176.0°179.0°
C15N3C19C18157.6°155.8°
C15N3C16H1664.0°59.5°
C15N3C16H16A53.8°61.6°
C15N3C19H1937.7°85.2°
C15N3C19H19A80.0°37.1°
C16N3C15C12152.1°173.2°
N3C16C17H16120.0°119.5°
N3C16C17H16A122.2°119.4°
N3C16C17C1817.9°22.2°
C16N3C19C1819.7°24.5°
N3C16H16H16A122.4°121.1°
N3C16C17H17102.1°140.6°
N3C16C17H17A139.3°96.1°
C16N3C19H19139.7°94.5°
C16N3C19H19A102.6°143.1°
C19N3C15C1230.8°6.5°
C19N3C16C171.3°1.3°
N3C19C18C1729.8°37.3°
N3C19C18H19120.0°118.9°
N3C19C18H19A122.3°118.7°
C19N3C16H16118.7°120.7°
C19N3C16H16A123.5°118.1°
N3C19C18H18149.8°80.8°
N3C19C18H18A92.0°155.3°
N3C19H19H19A122.7°122.3°
C4C5C6H5120.0°120.0°
C4C5C6H5A120.2°120.0°
C4C5C6C772.2°70.2°
C5C4H4H4A122.2°120.5°
C4C5H5H5A120.2°119.9°
C4C5C6H647.8°49.7°
C4C5C6H6A168.5°169.7°
C5C6C7H6120.0°120.0°
C5C6C7H6A119.3°120.0°
C5C6C7C839.9°50.0°
C6C5C4H459.8°69.9°
C6C5C4H4A177.8°169.6°
C6C5H5H5A120.2°120.0°
C5C6H6H6A119.3°120.0°
C5C6C7H7160.0°169.7°
C5C6C7H7A80.1°69.8°
C6C7C8H7120.0°119.7°
C6C7C8H7A120.1°119.8°
C7C6C5H5167.8°169.7°
C7C6C5H5A48.0°49.7°
C7C6H6H6A119.4°120.0°
C6C7H7H7A120.1°120.5°
C8C7C6H680.0°70.0°
C8C7C6H6A159.3°169.9°
C8C7H7H7A120.1°120.6°
C9C10C11H10180.0°179.9°
C9C10C11C124.7°0.0°
C10C9C14C136.2°0.6°
C9C10C11H11175.4°180.0°
C10C9C14H14173.8°179.7°
C14C9C10C117.0°0.3°
C9C14C13C123.1°0.5°
C9C14C13H14180.0°179.7°
C14C9C10H10173.0°179.8°
C9C14C13H13176.9°179.7°
C10C11C12H11180.0°180.0°
C10C11C12C131.1°0.0°
C10C11C12C15179.9°180.0°
C11C12C13C15178.8°180.0°
C11C12C13C140.3°0.3°
C12C11C10H10175.4°180.0°
C11C12C13H13179.7°180.0°
C12C13C14H13180.0°179.7°
C13C12C11H11178.9°180.0°
C12C13C14H14176.9°179.7°
C15C12C13C14179.2°179.7°
C15C12C11H110.1°0.0°
C15C12C13H130.9°0.0°
C16C17C18H17120.0°118.3°
C16C17C18H17A121.4°118.4°
C16C17C18C1930.0°35.7°
C17C16H16H16A122.4°121.1°
C16C17H17H17A121.5°123.3°
C16C17C18H18150.0°82.6°
C16C17C18H18A91.8°153.6°
C17C18C19H18120.0°118.1°
C17C18C19H18A121.8°117.9°
C18C17C16H16137.9°97.2°
C18C17C16H16A104.3°141.6°
C18C17H17H17A121.5°123.2°
C17C18H18H18A121.9°123.9°
C17C18C19H19149.8°81.5°
C17C18C19H19A92.5°156.1°
C19C18C17H1790.0°154.0°
C19C18C17H17A151.4°82.7°
C19C18H18H18A122.0°123.9°
C18C19H19H19A122.6°122.3°
H4C4C5H560.2°50.2°
H4C4C5H5A179.9°170.1°
H4AC4C5H557.8°70.3°
H4AC4C5H5A62.0°49.6°
H5C5C6H672.2°70.3°
H5C5C6H6A48.5°49.7°
H5AC5C6H6168.0°169.7°
H5AC5C6H6A71.3°70.3°
H6C6C7H740.0°49.7°
H6C6C7H7A159.9°170.2°
H6AC6C7H780.7°70.4°
H6AC6C7H7A39.2°50.2°
H10C10C11H114.6°0.1°
H13C13C14H143.1°0.0°
H16C16C17H1717.9°21.1°
H16C16C17H17A100.7°144.4°
H16AC16C17H17135.7°100.1°
H16AC16C17H17A17.1°23.2°
H17C17C18H1830.0°35.8°
H17C17C18H18A148.2°88.1°
H17AC17C18H1888.6°159.0°
H17AC17C18H18A29.6°35.2°
H18C18C19H1990.2°160.3°
H18C18C19H19A27.5°37.9°
H18AC18C19H1928.0°36.4°
H18AC18C19H19A145.7°86.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon