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SummaryGeometryRelated PDB entries

1LY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CABNAGsing1.33Å1.33ÅAromatic
CABCAEdoub1.35Å1.33ÅAromatic
NAGCAIdoub1.33Å1.33ÅAromatic
CAENAJsing1.37Å1.33ÅAromatic
CAINAJsing1.37Å1.32ÅAromatic
CAICADsing1.41Å1.33ÅAromatic
NAJCAFsing1.37Å1.39ÅAromatic
CADCACdoub1.36Å1.40ÅAromatic
CAFCAHdoub1.36Å1.38ÅAromatic
CACCAHsing1.41Å1.39ÅAromatic
CAHNAAsing1.40Å1.32Å
CACH1sing1.08Å1.08Å
CADH2sing1.08Å1.08Å
CABH3sing1.08Å1.08Å
CAEH4sing1.08Å1.08Å
CAFH5sing1.08Å1.08Å
NAAH6sing0.97Å1.00Å
NAAH7sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
NAGCABCAE108.1°108.6°
CABNAGCAI108.1°109.1°
NAGCABH3126.0°125.7°
CABCAENAJ107.3°107.2°
CAECABH3126.0°125.7°
CABCAEH4126.4°126.4°
NAGCAINAJ107.4°108.0°
NAGCAICAD133.3°132.2°
CAENAJCAI109.2°107.1°
CAENAJCAF126.7°132.5°
NAJCAEH4126.3°126.4°
NAJCAICAD119.4°119.8°
CAINAJCAF124.1°120.5°
CAICADCAC120.7°119.5°
CAICADH2119.7°120.3°
NAJCAFCAH117.2°120.5°
NAJCAFH5121.4°119.8°
CADCACCAH119.5°119.7°
CADCACH1120.2°120.2°
CACCADH2119.6°120.3°
CAFCAHCAC119.3°120.1°
CAFCAHNAA119.5°119.9°
CAHCAFH5121.4°119.7°
CACCAHNAA121.2°120.0°
CAHCACH1120.3°120.1°
CAHNAAH6109.5°120.0°
CAHNAAH7109.5°120.0°
H6NAAH7109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
NAGCABCAEH3180.0°180.0°
NAGCABCAENAJ0.7°0.0°
CABNAGCAINAJ0.7°0.0°
CABNAGCAICAD179.3°180.0°
NAGCABCAEH4179.3°180.0°
CAECABNAGCAI0.9°0.0°
CABCAENAJH4180.0°180.0°
CABCAENAJCAI0.3°0.0°
CABCAENAJCAF179.1°180.0°
NAGCAINAJCAE0.3°0.0°
NAGCAINAJCAD178.8°180.0°
NAGCAINAJCAF178.6°180.0°
NAGCAICADCAC179.1°180.0°
NAGCAICADH20.8°0.1°
CAINAGCABH3179.1°180.0°
CAENAJCAICAF178.9°180.0°
CAENAJCAICAD179.1°180.0°
CAENAJCAFCAH179.4°179.9°
NAJCAECABH3179.3°180.0°
CAENAJCAFH50.6°0.0°
NAJCAICADCAC0.7°0.1°
CAINAJCAFCAH0.8°0.0°
NAJCAICADH2179.3°180.0°
CAINAJCAEH4179.8°179.9°
CAINAJCAFH5179.2°179.9°
CADCAINAJCAF0.2°0.0°
CAICADCACH2180.0°179.9°
CAICADCACCAH1.0°0.1°
CAICADCACH1179.0°179.7°
NAJCAFCAHH5180.0°179.9°
NAJCAFCAHCAC0.4°0.0°
NAJCAFCAHNAA179.5°179.8°
CAFNAJCAEH40.9°0.0°
CADCACCAHCAF0.5°0.0°
CADCACCAHH1180.0°179.6°
CADCACCAHNAA179.7°179.7°
CAFCAHCACNAA179.8°179.8°
CAFCAHCACH1179.6°179.6°
CAFCAHNAAH6180.0°179.7°
CAFCAHNAAH760.0°0.2°
CAHCACCADH2178.9°180.0°
CACCAHCAFH5179.6°179.9°
CACCAHNAAH60.2°0.1°
CACCAHNAAH7120.2°180.0°
NAACAHCACH10.3°0.1°
NAACAHCAFH50.5°0.3°
CAHNAAH6H7120.0°179.9°
H1CACCADH21.0°0.4°
H3CABCAEH40.7°0.0°

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PDB entries from 2024-07-17

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