1HZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3'	C3'	sing	1.43Å	1.41Å
N5'	C5'	sing	1.47Å	1.45Å
N5'	S	sing	1.66Å	1.59Å
O2'	C2'	sing	1.43Å	1.43Å
C5'	C4'	sing	1.53Å	1.52Å
C3'	C4'	sing	1.54Å	1.51Å
C3'	C2'	sing	1.55Å	1.50Å
C4'	O4'	sing	1.44Å	1.43Å
O1P	S	doub	1.42Å	1.43Å
C2'	C1'	sing	1.55Å	1.51Å
S	C22	sing	1.81Å	1.68Å
S	O2P	doub	1.42Å	1.43Å
C22	C21	sing	1.53Å	1.53Å
O4'	C1'	sing	1.44Å	1.43Å
C1'	N9	sing	1.46Å	1.47Å
O14	C14	sing	1.36Å	1.35Å
C21	C19	sing	1.51Å	1.53Å
N9	C8	sing	1.36Å	1.33Å	Aromatic
N9	C4	sing	1.37Å	1.34Å	Aromatic
C14	C19	doub	1.39Å	1.39Å	Aromatic
C14	C15	sing	1.39Å	1.40Å	Aromatic
C8	N7	doub	1.30Å	1.35Å	Aromatic
C19	C18	sing	1.38Å	1.39Å	Aromatic
N3	C4	doub	1.33Å	1.36Å	Aromatic
N3	C2	sing	1.32Å	1.33Å	Aromatic
O15	C15	sing	1.36Å	1.37Å
C4	C5	sing	1.41Å	1.39Å	Aromatic
C15	C16	doub	1.38Å	1.39Å	Aromatic
C18	C17	doub	1.38Å	1.39Å	Aromatic
N7	C5	sing	1.36Å	1.35Å	Aromatic
C2	N1	doub	1.32Å	1.34Å	Aromatic
C5	C6	doub	1.40Å	1.40Å	Aromatic
C16	C17	sing	1.38Å	1.39Å	Aromatic
N1	C6	sing	1.33Å	1.36Å	Aromatic
C6	N6	sing	1.38Å	1.37Å
C22	H1	sing	1.09Å	1.10Å
C22	H2	sing	1.09Å	1.10Å
C21	H3	sing	1.09Å	1.10Å
C21	H4	sing	1.09Å	1.10Å
C18	H5	sing	1.08Å	1.08Å
C17	H6	sing	1.08Å	1.08Å
C16	H7	sing	1.08Å	1.08Å
O15	H8	sing	0.97Å	0.95Å
O14	H9	sing	0.97Å	0.95Å
N5'	H10	sing	0.97Å	1.00Å
C5'	H11	sing	1.09Å	1.10Å
C5'	H12	sing	1.09Å	1.10Å
C4'	H13	sing	1.09Å	1.10Å
C1'	H14	sing	1.09Å	1.10Å
C2'	H15	sing	1.09Å	1.10Å
O2'	H16	sing	0.97Å	0.95Å
C3'	H17	sing	1.09Å	1.10Å
O3'	H18	sing	0.97Å	0.95Å
C8	H19	sing	1.08Å	1.08Å
N6	H20	sing	0.97Å	1.00Å
N6	H21	sing	0.97Å	1.00Å
C2	H22	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3'	C3'	C4'	107.9°	110.5°
O3'	C3'	C2'	111.7°	110.5°
O3'	C3'	H17	112.8°	110.5°
C3'	O3'	H18	109.5°	114.0°
C5'	N5'	S	119.5°	120.0°
N5'	C5'	C4'	111.5°	109.4°
C5'	N5'	H10	106.9°	120.0°
N5'	C5'	H11	108.9°	109.5°
N5'	C5'	H12	109.0°	109.5°
N5'	S	O1P	105.0°	104.3°
N5'	S	C22	111.3°	104.5°
N5'	S	O2P	109.8°	104.3°
S	N5'	H10	106.9°	120.0°
O2'	C2'	C3'	108.6°	111.0°
O2'	C2'	C1'	105.6°	110.9°
O2'	C2'	H15	113.5°	110.8°
C2'	O2'	H16	109.5°	113.9°
C5'	C4'	C3'	110.8°	109.9°
C5'	C4'	O4'	112.4°	109.9°
C4'	C5'	H11	109.0°	109.4°
C4'	C5'	H12	108.9°	109.5°
C5'	C4'	H13	109.0°	109.9°
C4'	C3'	C2'	101.2°	104.2°
C3'	C4'	O4'	105.0°	107.3°
C3'	C4'	H13	109.2°	110.0°
C4'	C3'	H17	111.3°	110.5°
C3'	C2'	C1'	103.8°	102.1°
C3'	C2'	H15	112.3°	110.9°
C2'	C3'	H17	111.4°	110.5°
C4'	O4'	C1'	108.7°	107.0°
O4'	C4'	H13	110.3°	109.9°
O1P	S	C22	109.6°	110.6°
O1P	S	O2P	112.0°	121.0°
C2'	C1'	O4'	107.1°	103.4°
C2'	C1'	N9	109.9°	110.6°
C2'	C1'	H14	110.2°	110.7°
C1'	C2'	H15	112.3°	110.9°
C22	S	O2P	109.2°	110.5°
S	C22	C21	110.9°	109.5°
S	C22	H1	109.1°	109.5°
S	C22	H2	109.1°	109.4°
C22	C21	C19	114.9°	109.5°
C21	C22	H1	109.1°	109.5°
C21	C22	H2	109.1°	109.5°
C22	C21	H3	108.1°	109.5°
C22	C21	H4	108.1°	109.4°
O4'	C1'	N9	107.2°	110.6°
O4'	C1'	H14	111.5°	110.6°
C1'	N9	C8	125.3°	126.3°
C1'	N9	C4	125.5°	126.2°
N9	C1'	H14	110.8°	110.6°
O14	C14	C19	119.1°	120.0°
O14	C14	C15	119.9°	120.1°
C14	O14	H9	109.5°	114.0°
C21	C19	C14	122.9°	120.0°
C21	C19	C18	118.3°	120.0°
C19	C21	H3	108.1°	109.5°
C19	C21	H4	108.1°	109.5°
C8	N9	C4	109.1°	107.5°
N9	C8	N7	108.5°	110.0°
N9	C8	H19	125.8°	125.0°
N9	C4	N3	132.6°	135.0°
N9	C4	C5	107.3°	106.0°
C19	C14	C15	121.0°	119.9°
C14	C19	C18	118.8°	120.0°
C14	C15	O15	122.2°	120.1°
C14	C15	C16	119.2°	119.9°
C8	N7	C5	108.2°	109.5°
N7	C8	H19	125.7°	125.0°
C19	C18	C17	121.0°	120.2°
C19	C18	H5	119.5°	119.9°
C4	N3	C2	119.4°	120.7°
N3	C4	C5	120.2°	119.0°
N3	C2	N1	121.7°	122.5°
N3	C2	H22	119.1°	118.8°
O15	C15	C16	118.6°	120.0°
C15	O15	H8	109.5°	114.0°
C4	C5	N7	106.9°	107.1°
C4	C5	C6	119.4°	118.2°
C15	C16	C17	120.0°	120.0°
C15	C16	H7	120.0°	120.0°
C18	C17	C16	119.9°	120.1°
C17	C18	H5	119.5°	119.9°
C18	C17	H6	120.0°	120.0°
N7	C5	C6	133.7°	134.7°
C2	N1	C6	121.9°	121.2°
N1	C2	H22	119.2°	118.8°
C5	C6	N1	117.4°	118.4°
C5	C6	N6	121.6°	120.8°
C16	C17	H6	120.0°	119.9°
C17	C16	H7	120.0°	120.0°
N1	C6	N6	120.9°	120.8°
C6	N6	H20	109.5°	120.0°
C6	N6	H21	109.4°	120.0°
H1	C22	H2	109.5°	109.5°
H3	C21	H4	109.5°	109.5°
H11	C5'	H12	109.5°	109.5°
H20	N6	H21	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3'	C3'	C2'	O2'	36.2°	20.4°
O3'	C3'	C4'	C5'	83.8°	119.8°
O3'	C3'	C4'	C2'	117.3°	118.7°
O3'	C3'	C4'	H17	124.2°	122.6°
O3'	C3'	C2'	H17	127.1°	122.6°
O3'	C3'	C4'	O4'	154.6°	120.8°
O3'	C3'	C2'	C1'	148.3°	97.8°
O3'	C3'	C4'	H13	36.3°	1.2°
O3'	C3'	C2'	H15	90.2°	144.0°
C5'	N5'	S	H10	121.4°	180.0°
N5'	C5'	C4'	H11	120.3°	120.0°
N5'	C5'	C4'	H12	120.3°	120.0°
N5'	C5'	C4'	C3'	171.0°	175.7°
N5'	C5'	C4'	O4'	71.9°	66.4°
C5'	N5'	S	O1P	178.8°	51.1°
C5'	N5'	S	C22	60.4°	65.0°
C5'	N5'	S	O2P	60.6°	178.9°
N5'	C5'	H11	H12	119.1°	120.0°
N5'	C5'	C4'	H13	50.8°	54.6°
S	N5'	C5'	C4'	104.7°	165.0°
N5'	S	O1P	C22	119.6°	111.8°
N5'	S	O1P	O2P	119.0°	116.7°
N5'	S	C22	O2P	121.3°	111.6°
N5'	S	C22	C21	163.6°	180.0°
N5'	S	C22	H1	76.1°	60.0°
N5'	S	C22	H2	43.4°	60.0°
S	N5'	C5'	H11	15.6°	75.0°
S	N5'	C5'	H12	135.0°	45.1°
O2'	C2'	C3'	C4'	78.3°	139.1°
O2'	C2'	C3'	C1'	112.1°	118.2°
O2'	C2'	C3'	H15	126.4°	123.6°
O2'	C2'	C1'	H15	124.2°	123.5°
O2'	C2'	C1'	O4'	95.0°	155.3°
O2'	C2'	C1'	N9	148.9°	86.2°
O2'	C2'	C1'	H14	26.5°	36.8°
O2'	C2'	C3'	H17	163.3°	102.2°
C5'	C4'	C3'	O4'	121.6°	119.4°
C5'	C4'	C3'	H13	120.1°	121.0°
C5'	C4'	C3'	C2'	158.9°	121.5°
C5'	C4'	O4'	H13	122.0°	121.0°
C5'	C4'	O4'	C1'	147.0°	146.0°
C4'	C5'	N5'	H10	16.7°	15.0°
C4'	C5'	H11	H12	119.1°	120.0°
C5'	C4'	C3'	H17	40.4°	2.8°
C4'	C3'	C2'	H17	118.3°	118.7°
C3'	C4'	O4'	H13	117.5°	119.6°
C4'	C3'	C2'	C1'	33.7°	20.9°
C3'	C4'	O4'	C1'	26.5°	26.6°
C3'	C4'	C5'	H11	68.8°	64.3°
C3'	C4'	C5'	H12	50.7°	55.7°
C4'	C3'	C2'	H15	155.3°	97.3°
C4'	C3'	O3'	H18	180.0°	180.0°
C2'	C3'	C4'	O4'	37.2°	2.1°
C3'	C2'	C1'	H15	121.6°	118.2°
C3'	C2'	C1'	O4'	19.2°	37.0°
C3'	C2'	C1'	N9	96.9°	155.5°
C2'	C3'	C4'	H13	81.0°	117.5°
C3'	C2'	C1'	H14	140.7°	81.5°
C3'	C2'	O2'	H16	180.0°	67.3°
C2'	C3'	O3'	H18	69.7°	65.2°
C4'	O4'	C1'	C2'	4.5°	40.1°
C4'	O4'	C1'	N9	122.3°	158.6°
O4'	C4'	C5'	H11	48.4°	53.5°
O4'	C4'	C5'	H12	167.8°	173.6°
C4'	O4'	C1'	H14	116.2°	78.5°
O4'	C4'	C3'	H17	81.2°	116.6°
O1P	S	C22	O2P	123.0°	136.7°
O1P	S	C22	C21	80.7°	68.4°
O1P	S	C22	H1	39.5°	51.7°
O1P	S	C22	H2	159.1°	171.6°
O1P	S	N5'	H10	59.7°	128.9°
C2'	C1'	O4'	N9	117.8°	118.5°
C2'	C1'	O4'	H14	120.7°	118.6°
C2'	C1'	N9	H14	122.1°	123.1°
C2'	C1'	N9	C8	103.6°	90.5°
C2'	C1'	N9	C4	76.3°	89.2°
C1'	C2'	O2'	H16	69.2°	180.0°
C1'	C2'	C3'	H17	84.6°	139.6°
S	C22	C21	H1	120.2°	120.0°
S	C22	C21	H2	120.2°	120.0°
S	C22	C21	C19	140.3°	180.0°
S	C22	H1	H2	119.3°	119.9°
S	C22	C21	H3	19.5°	60.0°
S	C22	C21	H4	98.9°	60.0°
C22	S	N5'	H10	178.2°	115.0°
O2P	S	C22	C21	42.3°	68.3°
O2P	S	C22	H1	162.5°	171.6°
O2P	S	C22	H2	77.9°	51.7°
O2P	S	N5'	H10	60.8°	1.1°
C22	C21	C19	H3	120.8°	120.0°
C22	C21	C19	H4	120.8°	119.9°
C22	C21	C19	C14	67.1°	84.7°
C22	C21	C19	C18	114.7°	95.0°
C21	C22	H1	H2	119.4°	120.0°
C22	C21	H3	H4	117.5°	120.0°
O4'	C1'	N9	H14	121.9°	122.9°
O4'	C1'	N9	C8	12.4°	23.5°
O4'	C1'	N9	C4	167.7°	156.8°
C1'	O4'	C4'	H13	91.0°	93.0°
O4'	C1'	C2'	H15	140.8°	81.2°
C1'	N9	C8	C4	179.9°	179.8°
C1'	N9	C8	N7	179.3°	180.0°
C1'	N9	C4	N3	0.2°	0.7°
C1'	N9	C4	C5	179.5°	179.9°
N9	C1'	C2'	H15	24.7°	37.3°
C1'	N9	C8	H19	0.7°	0.1°
O14	C14	C19	C21	1.5°	0.0°
O14	C14	C19	C15	179.1°	179.7°
O14	C14	C19	C18	179.6°	179.7°
O14	C14	C15	O15	0.1°	0.1°
O14	C14	C15	C16	179.9°	179.8°
C21	C19	C14	C18	178.2°	179.7°
C21	C19	C14	C15	179.5°	179.7°
C21	C19	C18	C17	179.5°	180.0°
C19	C21	C22	H1	99.5°	60.0°
C19	C21	C22	H2	20.1°	60.0°
C19	C21	H3	H4	117.5°	120.0°
C21	C19	C18	H5	0.4°	0.0°
N9	C8	N7	H19	180.0°	179.9°
C8	N9	C4	N3	179.8°	179.5°
C8	N9	C4	C5	0.5°	0.3°
N9	C8	N7	C5	0.7°	0.0°
C8	N9	C1'	H14	134.3°	146.4°
C4	N9	C8	N7	0.8°	0.2°
N9	C4	N3	C5	179.7°	179.0°
N9	C4	N3	C2	179.5°	179.6°
N9	C4	C5	N7	0.1°	0.4°
N9	C4	C5	C6	179.5°	179.8°
C4	N9	C1'	H14	45.8°	33.9°
C4	N9	C8	H19	179.3°	179.7°
C19	C14	C15	O15	179.1°	179.8°
C19	C14	C15	C16	0.8°	0.6°
C14	C19	C18	C17	1.3°	0.3°
C14	C19	C21	H3	172.1°	35.3°
C14	C19	C21	H4	53.7°	155.3°
C14	C19	C18	H5	178.7°	179.7°
C19	C14	O14	H9	180.0°	90.0°
C15	C14	C19	C18	1.3°	0.6°
C14	C15	O15	C16	180.0°	179.7°
C14	C15	C16	C17	0.4°	0.3°
C14	C15	C16	H7	179.7°	179.8°
C14	C15	O15	H8	180.0°	89.6°
C15	C14	O14	H9	0.9°	89.7°
C8	N7	C5	C4	0.3°	0.3°
C8	N7	C5	C6	179.9°	180.0°
C19	C18	C17	H5	180.0°	180.0°
C19	C18	C17	C16	0.8°	0.1°
C18	C19	C21	H3	6.1°	145.0°
C18	C19	C21	H4	124.5°	25.0°
C19	C18	C17	H6	179.2°	180.0°
N3	C4	C5	N7	179.9°	179.7°
C4	N3	C2	N1	0.1°	0.2°
N3	C4	C5	C6	0.2°	0.5°
C4	N3	C2	H22	179.9°	179.7°
C2	N3	C4	C5	0.1°	0.5°
N3	C2	N1	H22	180.0°	180.0°
N3	C2	N1	C6	0.2°	0.1°
O15	C15	C16	C17	179.6°	180.0°
O15	C15	C16	H7	0.4°	0.1°
C4	C5	N7	C6	179.5°	179.8°
C4	C5	C6	N1	0.2°	0.2°
C4	C5	C6	N6	179.9°	179.7°
C15	C16	C17	C18	0.3°	0.1°
C15	C16	C17	H7	180.0°	179.9°
C15	C16	C17	H6	179.6°	180.0°
C16	C15	O15	H8	0.1°	90.0°
C18	C17	C16	H6	180.0°	180.0°
C18	C17	C16	H7	179.7°	180.0°
N7	C5	C6	N1	179.7°	180.0°
N7	C5	C6	N6	0.4°	0.0°
C5	N7	C8	H19	179.4°	180.0°
C2	N1	C6	C5	0.1°	0.0°
C2	N1	C6	N6	179.9°	180.0°
C5	C6	N1	N6	180.0°	180.0°
C5	C6	N6	H20	180.0°	0.0°
C5	C6	N6	H21	60.0°	179.9°
C16	C17	C18	H5	179.2°	180.0°
N1	C6	N6	H20	0.0°	180.0°
N1	C6	N6	H21	120.0°	0.0°
C6	N1	C2	H22	179.8°	180.0°
C6	N6	H20	H21	120.0°	179.9°
H1	C22	C21	H3	139.7°	180.0°
H1	C22	C21	H4	21.3°	60.0°
H2	C22	C21	H3	100.7°	60.0°
H2	C22	C21	H4	140.9°	180.0°
H5	C18	C17	H6	0.9°	0.0°
H6	C17	C16	H7	0.4°	0.0°
H10	N5'	C5'	H11	137.0°	105.0°
H10	N5'	C5'	H12	103.5°	135.0°
H11	C5'	C4'	H13	171.1°	174.6°
H12	C5'	C4'	H13	69.5°	65.4°
H13	C4'	C3'	H17	160.5°	123.8°
H14	C1'	C2'	H15	97.7°	160.3°
H15	C2'	O2'	H16	54.3°	56.4°
H15	C2'	C3'	H17	36.9°	21.4°
H17	C3'	O3'	H18	56.7°	57.4°

Release date:	2013-07-31
Definition date:	2013-02-09
Last modified:	2024-09-27
Release status:	REL
Processing site:	RCSB
Derived from:	4IZ6