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Summary Geometry Related PDB entries

1GP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C3	C2	sing	1.53Å	1.58Å
C3	O2	sing	1.43Å	1.46Å
C3	H31	sing	1.09Å	1.10Å
C3	H32	sing	1.09Å	1.10Å
O3	C2	sing	1.43Å	1.42Å
O3	HO3	sing	0.97Å	0.95Å
C2	C1	sing	1.53Å	1.59Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C1	O1P	sing	1.43Å	1.48Å
C1	H11	sing	1.09Å	1.10Å
C1	H12	sing	1.09Å	1.10Å
O1P	P	sing	1.61Å	1.65Å
O2P	P	doub	1.48Å	1.49Å
O3P	P	sing	1.61Å	1.48Å
O3P	HO3P	sing	0.97Å	0.95Å
O4P	P	sing	1.61Å	1.51Å
O4P	HO4P	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C3	O2	113.6°	109.4°
C2	C3	H31	107.2°	109.5°
C2	C3	H32	108.1°	109.5°
C3	C2	O3	105.6°	109.5°
C3	C2	C1	109.3°	109.4°
C3	C2	H2	112.9°	109.5°
O2	C3	H31	107.2°	109.4°
O2	C3	H32	108.1°	109.5°
C3	O2	HO2	109.5°	106.8°
H31	C3	H32	112.7°	109.5°
C2	O3	HO3	109.5°	106.8°
O3	C2	C1	111.9°	109.5°
O3	C2	H2	110.4°	109.4°
C1	C2	H2	106.8°	109.5°
C2	C1	O1P	110.5°	109.5°
C2	C1	H11	108.9°	109.5°
C2	C1	H12	109.1°	109.4°
O1P	C1	H11	108.9°	109.5°
O1P	C1	H12	109.1°	109.4°
C1	O1P	P	124.2°	106.8°
H11	C1	H12	110.3°	109.5°
O1P	P	O2P	113.7°	109.4°
O1P	P	O3P	104.0°	109.5°
O1P	P	O4P	111.7°	109.5°
O2P	P	O3P	109.8°	109.5°
O2P	P	O4P	109.6°	109.5°
P	O3P	HO3P	109.5°	106.7°
O3P	P	O4P	107.8°	109.5°
P	O4P	HO4P	109.5°	106.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C3	O2	H31	118.2°	120.0°
C2	C3	O2	H32	120.0°	120.0°
C2	C3	H31	H32	118.9°	120.1°
C3	C2	O3	C1	118.8°	120.0°
C3	C2	O3	H2	122.4°	120.0°
C3	C2	O3	HO3	100.6°	60.0°
C3	C2	C1	H2	122.5°	120.0°
C2	C3	O2	HO2	74.6°	180.0°
C3	C2	C1	O1P	46.4°	175.0°
C3	C2	C1	H11	73.2°	55.0°
C3	C2	C1	H12	166.3°	65.1°
O2	C3	H31	H32	118.9°	120.0°
O2	C3	C2	O3	106.0°	65.0°
O2	C3	C2	C1	133.4°	175.0°
O2	C3	C2	H2	14.7°	55.0°
H31	C3	C2	O3	135.8°	175.1°
H31	C3	C2	C1	15.2°	55.0°
H31	C3	C2	H2	103.5°	64.9°
H31	C3	O2	HO2	167.1°	60.0°
H32	C3	C2	O3	14.0°	55.0°
H32	C3	C2	C1	106.5°	65.1°
H32	C3	C2	H2	134.8°	175.0°
H32	C3	O2	HO2	45.4°	60.0°
O3	C2	C1	H2	120.9°	120.0°
O3	C2	C1	O1P	70.3°	64.9°
O3	C2	C1	H11	170.2°	175.1°
O3	C2	C1	H12	49.7°	55.0°
HO3	O3	C2	C1	18.2°	60.0°
HO3	O3	C2	H2	137.0°	180.0°
C2	C1	O1P	H11	119.6°	120.0°
C2	C1	O1P	H12	120.0°	119.9°
C2	C1	H11	H12	119.7°	120.0°
C2	C1	O1P	P	173.8°	180.0°
H2	C2	C1	O1P	168.8°	55.0°
H2	C2	C1	H11	49.3°	65.0°
H2	C2	C1	H12	71.2°	175.0°
O1P	C1	H11	H12	119.7°	120.0°
C1	O1P	P	O2P	33.5°	55.0°
C1	O1P	P	O3P	85.9°	175.0°
C1	O1P	P	O4P	158.1°	65.0°
H11	C1	O1P	P	54.2°	60.0°
H12	C1	O1P	P	66.2°	60.1°
O1P	P	O2P	O3P	116.0°	120.0°
O1P	P	O2P	O4P	125.7°	120.0°
O1P	P	O3P	O4P	118.6°	120.1°
O1P	P	O3P	HO3P	98.6°	180.0°
O1P	P	O4P	HO4P	99.3°	60.0°
O2P	P	O3P	O4P	119.4°	120.0°
O2P	P	O3P	HO3P	23.3°	60.0°
O2P	P	O4P	HO4P	133.9°	179.9°
O3P	P	O4P	HO4P	14.3°	60.1°
HO3P	O3P	P	O4P	142.7°	60.0°

222415

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