1FZ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3G | PG | doub | 1.48Å | 1.49Å | |
| O1G | PG | sing | 1.61Å | 1.52Å | |
| O2G | PG | sing | 1.61Å | 1.52Å | |
| PG | O3B | sing | 1.61Å | 1.61Å | |
| O1A | PA | doub | 1.48Å | 1.53Å | |
| O3B | PB | sing | 1.61Å | 1.60Å | |
| O2B | PB | doub | 1.48Å | 1.50Å | |
| PB | N3A | sing | 1.68Å | 1.64Å | |
| PB | O1B | sing | 1.61Å | 1.50Å | |
| PA | N3A | sing | 1.68Å | 1.61Å | |
| PA | O2A | sing | 1.61Å | 1.53Å | |
| PA | O5' | sing | 1.61Å | 1.64Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| C4' | C3' | sing | 1.55Å | 1.52Å | |
| C4' | O4' | sing | 1.45Å | 1.44Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C5M | C5 | sing | 1.51Å | 1.51Å | |
| C2' | C1' | sing | 1.54Å | 1.51Å | |
| C6 | C5 | doub | 1.35Å | 1.39Å | |
| C6 | N1 | sing | 1.37Å | 1.35Å | |
| C1' | N1 | sing | 1.46Å | 1.48Å | |
| C5 | C4 | sing | 1.42Å | 1.51Å | |
| N1 | C2 | sing | 1.35Å | 1.42Å | |
| C4 | O4 | doub | 1.22Å | 1.26Å | |
| C4 | N3 | sing | 1.35Å | 1.35Å | |
| C2 | N3 | sing | 1.35Å | 1.34Å | |
| C2 | O2 | doub | 1.22Å | 1.24Å | |
| C6 | H1 | sing | 1.08Å | 1.08Å | |
| C5M | H2 | sing | 1.09Å | 1.10Å | |
| C5M | H3 | sing | 1.09Å | 1.10Å | |
| C5M | H4 | sing | 1.09Å | 1.10Å | |
| N3 | H5 | sing | 0.97Å | 1.00Å | |
| C1' | H6 | sing | 1.09Å | 1.10Å | |
| C2' | H7 | sing | 1.09Å | 1.10Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| C3' | H9 | sing | 1.09Å | 1.10Å | |
| O3' | H10 | sing | 0.97Å | 0.95Å | |
| C4' | H11 | sing | 1.09Å | 1.10Å | |
| C5' | H12 | sing | 1.09Å | 1.10Å | |
| C5' | H13 | sing | 1.09Å | 1.10Å | |
| O2A | H14 | sing | 0.97Å | 0.95Å | |
| N3A | H15 | sing | 1.01Å | 1.00Å | |
| O1B | H16 | sing | 0.97Å | 0.95Å | |
| O1G | H17 | sing | 0.97Å | 0.95Å | |
| O2G | H18 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3G | PG | O1G | 109.8° | 109.5° |
| O3G | PG | O2G | 108.5° | 109.5° |
| O3G | PG | O3B | 107.9° | 109.5° |
| O1G | PG | O2G | 114.0° | 109.5° |
| O1G | PG | O3B | 109.3° | 109.5° |
| PG | O1G | H17 | 109.5° | 114.1° |
| O2G | PG | O3B | 107.2° | 109.4° |
| PG | O2G | H18 | 109.5° | 114.0° |
| PG | O3B | PB | 121.6° | 134.0° |
| O1A | PA | N3A | 107.3° | 109.4° |
| O1A | PA | O2A | 112.4° | 109.4° |
| O1A | PA | O5' | 109.1° | 109.5° |
| O3B | PB | O2B | 114.2° | 109.5° |
| O3B | PB | N3A | 100.2° | 109.5° |
| O3B | PB | O1B | 105.6° | 109.5° |
| O2B | PB | N3A | 115.4° | 109.5° |
| O2B | PB | O1B | 106.0° | 109.4° |
| N3A | PB | O1B | 115.2° | 109.4° |
| PB | N3A | PA | 127.1° | 111.0° |
| PB | N3A | H15 | 104.9° | 111.0° |
| PB | O1B | H16 | 109.5° | 114.0° |
| N3A | PA | O2A | 110.9° | 109.5° |
| N3A | PA | O5' | 109.7° | 109.5° |
| PA | N3A | H15 | 104.9° | 110.9° |
| O2A | PA | O5' | 107.4° | 109.5° |
| PA | O2A | H14 | 109.5° | 114.0° |
| PA | O5' | C5' | 123.3° | 123.0° |
| O5' | C5' | C4' | 108.2° | 109.4° |
| O5' | C5' | H12 | 109.8° | 109.5° |
| O5' | C5' | H13 | 109.8° | 109.5° |
| C5' | C4' | C3' | 114.0° | 110.6° |
| C5' | C4' | O4' | 110.5° | 110.7° |
| C5' | C4' | H11 | 108.6° | 110.7° |
| C4' | C5' | H12 | 109.8° | 109.5° |
| C4' | C5' | H13 | 109.8° | 109.5° |
| O3' | C3' | C4' | 112.7° | 110.9° |
| O3' | C3' | C2' | 109.9° | 110.9° |
| O3' | C3' | H9 | 111.1° | 110.8° |
| C3' | O3' | H10 | 109.5° | 114.0° |
| C3' | C4' | O4' | 105.5° | 103.6° |
| C4' | C3' | C2' | 103.2° | 102.1° |
| C4' | C3' | H9 | 109.8° | 110.9° |
| C3' | C4' | H11 | 108.6° | 110.6° |
| C4' | O4' | C1' | 110.4° | 106.9° |
| O4' | C4' | H11 | 109.5° | 110.5° |
| C3' | C2' | C1' | 103.9° | 104.2° |
| C3' | C2' | H7 | 110.9° | 110.5° |
| C3' | C2' | H8 | 110.9° | 110.6° |
| C2' | C3' | H9 | 109.8° | 110.9° |
| O4' | C1' | C2' | 106.7° | 107.4° |
| O4' | C1' | N1 | 112.8° | 109.9° |
| O4' | C1' | H6 | 109.7° | 109.9° |
| C5M | C5 | C6 | 119.7° | 120.5° |
| C5M | C5 | C4 | 122.7° | 120.4° |
| C5 | C5M | H2 | 109.5° | 109.5° |
| C5 | C5M | H3 | 109.5° | 109.4° |
| C5 | C5M | H4 | 109.5° | 109.5° |
| C2' | C1' | N1 | 109.8° | 109.9° |
| C2' | C1' | H6 | 108.7° | 109.8° |
| C1' | C2' | H7 | 110.9° | 110.5° |
| C1' | C2' | H8 | 110.8° | 110.5° |
| C5 | C6 | N1 | 121.7° | 119.7° |
| C6 | C5 | C4 | 117.6° | 119.1° |
| C5 | C6 | H1 | 119.1° | 120.1° |
| C6 | N1 | C1' | 121.6° | 119.7° |
| C6 | N1 | C2 | 119.2° | 120.6° |
| N1 | C6 | H1 | 119.2° | 120.2° |
| C1' | N1 | C2 | 119.2° | 119.7° |
| N1 | C1' | H6 | 109.1° | 109.9° |
| C5 | C4 | O4 | 121.4° | 120.3° |
| C5 | C4 | N3 | 117.6° | 119.4° |
| N1 | C2 | N3 | 121.5° | 121.0° |
| N1 | C2 | O2 | 118.8° | 119.5° |
| O4 | C4 | N3 | 121.0° | 120.3° |
| C4 | N3 | C2 | 122.3° | 120.3° |
| C4 | N3 | H5 | 118.9° | 119.9° |
| N3 | C2 | O2 | 119.7° | 119.6° |
| C2 | N3 | H5 | 118.9° | 119.8° |
| H2 | C5M | H3 | 109.5° | 109.5° |
| H2 | C5M | H4 | 109.4° | 109.5° |
| H3 | C5M | H4 | 109.4° | 109.5° |
| H7 | C2' | H8 | 109.4° | 110.4° |
| H12 | C5' | H13 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3G | PG | O1G | O2G | 122.0° | 120.0° |
| O3G | PG | O1G | O3B | 118.1° | 120.0° |
| O3G | PG | O2G | O3B | 116.3° | 120.0° |
| O3G | PG | O3B | PB | 99.9° | 45.0° |
| O3G | PG | O1G | H17 | 0.0° | 180.0° |
| O3G | PG | O2G | H18 | 0.0° | 60.1° |
| O1G | PG | O2G | O3B | 121.0° | 120.0° |
| O1G | PG | O3B | PB | 19.4° | 75.0° |
| O1G | PG | O2G | H18 | 122.7° | 60.0° |
| O2G | PG | O3B | PB | 143.4° | 165.0° |
| O2G | PG | O1G | H17 | 122.0° | 60.0° |
| PG | O3B | PB | O2B | 41.8° | 59.9° |
| PG | O3B | PB | N3A | 82.2° | 180.0° |
| PG | O3B | PB | O1B | 157.8° | 60.0° |
| O3B | PG | O1G | H17 | 118.1° | 60.0° |
| O3B | PG | O2G | H18 | 116.3° | 180.0° |
| O1A | PA | N3A | PB | 41.4° | 60.0° |
| O1A | PA | N3A | O2A | 123.1° | 120.0° |
| O1A | PA | N3A | O5' | 118.4° | 120.0° |
| O1A | PA | O2A | O5' | 120.0° | 120.0° |
| O1A | PA | O5' | C5' | 29.1° | 45.0° |
| O1A | PA | O2A | H14 | 0.0° | 180.0° |
| O1A | PA | N3A | H15 | 80.9° | 176.1° |
| O3B | PB | O2B | N3A | 115.3° | 120.1° |
| O3B | PB | O2B | O1B | 115.8° | 120.0° |
| O3B | PB | N3A | O1B | 112.7° | 120.0° |
| O3B | PB | N3A | PA | 129.9° | 180.0° |
| O3B | PB | N3A | H15 | 7.5° | 56.1° |
| O3B | PB | O1B | H16 | 121.5° | 60.0° |
| O2B | PB | N3A | O1B | 124.1° | 120.0° |
| O2B | PB | N3A | PA | 6.7° | 59.9° |
| O2B | PB | N3A | H15 | 115.6° | 63.9° |
| O2B | PB | O1B | H16 | 0.0° | 180.0° |
| PB | N3A | PA | H15 | 122.4° | 123.9° |
| PB | N3A | PA | O2A | 164.5° | 59.9° |
| PB | N3A | PA | O5' | 77.0° | 180.0° |
| N3A | PB | O1B | H16 | 129.0° | 60.0° |
| O1B | PB | N3A | PA | 117.4° | 60.0° |
| O1B | PB | N3A | H15 | 120.2° | 176.1° |
| N3A | PA | O2A | O5' | 119.8° | 120.0° |
| N3A | PA | O5' | C5' | 88.2° | 75.0° |
| N3A | PA | O2A | H14 | 120.1° | 60.1° |
| O2A | PA | O5' | C5' | 151.2° | 165.0° |
| O2A | PA | N3A | H15 | 42.2° | 64.0° |
| PA | O5' | C5' | C4' | 137.9° | 180.0° |
| PA | O5' | C5' | H12 | 18.1° | 60.0° |
| PA | O5' | C5' | H13 | 102.3° | 60.0° |
| O5' | PA | O2A | H14 | 120.0° | 60.0° |
| O5' | PA | N3A | H15 | 160.7° | 56.1° |
| O5' | C5' | C4' | H12 | 119.8° | 120.0° |
| O5' | C5' | C4' | H13 | 119.8° | 120.0° |
| O5' | C5' | C4' | C3' | 54.2° | 175.0° |
| O5' | C5' | C4' | O4' | 64.4° | 70.8° |
| O5' | C5' | C4' | H11 | 175.4° | 52.0° |
| O5' | C5' | H12 | H13 | 120.6° | 120.0° |
| C5' | C4' | C3' | O3' | 90.8° | 86.3° |
| C5' | C4' | C3' | O4' | 121.4° | 118.6° |
| C5' | C4' | C3' | H11 | 121.3° | 123.0° |
| C5' | C4' | O4' | H11 | 119.6° | 123.0° |
| C5' | C4' | C3' | C2' | 150.7° | 155.5° |
| C5' | C4' | O4' | C1' | 139.3° | 158.4° |
| C5' | C4' | C3' | H9 | 33.7° | 37.3° |
| C4' | C5' | H12 | H13 | 120.6° | 120.0° |
| O3' | C3' | C4' | C2' | 118.5° | 118.2° |
| O3' | C3' | C4' | H9 | 124.5° | 123.6° |
| O3' | C3' | C4' | O4' | 147.8° | 155.2° |
| O3' | C3' | C2' | H9 | 122.6° | 123.6° |
| O3' | C3' | C2' | C1' | 152.2° | 139.1° |
| O3' | C3' | C2' | H7 | 88.7° | 20.4° |
| O3' | C3' | C2' | H8 | 33.1° | 102.2° |
| O3' | C3' | C4' | H11 | 30.5° | 36.7° |
| C3' | C4' | O4' | H11 | 116.7° | 118.5° |
| C4' | C3' | C2' | H9 | 117.0° | 118.2° |
| C3' | C4' | O4' | C1' | 15.6° | 39.9° |
| C4' | C3' | C2' | C1' | 31.8° | 20.9° |
| C4' | C3' | C2' | H7 | 150.9° | 97.8° |
| C4' | C3' | C2' | H8 | 87.3° | 139.7° |
| C4' | C3' | O3' | H10 | 180.0° | 174.2° |
| C3' | C4' | C5' | H12 | 65.6° | 55.0° |
| C3' | C4' | C5' | H13 | 174.0° | 65.0° |
| O4' | C4' | C3' | C2' | 29.3° | 37.0° |
| C4' | O4' | C1' | C2' | 4.8° | 26.3° |
| C4' | O4' | C1' | N1 | 115.8° | 145.9° |
| C4' | O4' | C1' | H6 | 122.4° | 93.1° |
| O4' | C4' | C3' | H9 | 87.7° | 81.3° |
| O4' | C4' | C5' | H12 | 175.8° | 169.2° |
| O4' | C4' | C5' | H13 | 55.4° | 49.1° |
| C3' | C2' | C1' | O4' | 23.1° | 1.9° |
| C3' | C2' | C1' | H7 | 119.1° | 118.7° |
| C3' | C2' | C1' | H8 | 119.1° | 118.8° |
| C3' | C2' | C1' | N1 | 99.4° | 121.5° |
| C3' | C2' | C1' | H6 | 141.4° | 117.6° |
| C3' | C2' | H7 | H8 | 122.6° | 122.6° |
| C2' | C3' | O3' | H10 | 65.5° | 61.5° |
| C2' | C3' | C4' | H11 | 88.0° | 81.5° |
| O4' | C1' | C2' | N1 | 122.5° | 119.5° |
| O4' | C1' | C2' | H6 | 118.2° | 119.5° |
| O4' | C1' | N1 | C6 | 41.3° | 126.7° |
| O4' | C1' | N1 | H6 | 122.2° | 121.0° |
| O4' | C1' | N1 | C2 | 140.5° | 53.6° |
| O4' | C1' | C2' | H7 | 142.2° | 120.6° |
| O4' | C1' | C2' | H8 | 96.0° | 116.9° |
| C1' | O4' | C4' | H11 | 101.1° | 78.6° |
| C5M | C5 | C6 | C4 | 179.7° | 180.0° |
| C5M | C5 | C6 | N1 | 179.1° | 180.0° |
| C5M | C5 | C4 | O4 | 0.6° | 0.0° |
| C5M | C5 | C4 | N3 | 179.6° | 179.8° |
| C5M | C5 | C6 | H1 | 0.8° | 0.0° |
| C5 | C5M | H2 | H3 | 120.0° | 119.9° |
| C5 | C5M | H2 | H4 | 120.0° | 120.0° |
| C5 | C5M | H3 | H4 | 120.0° | 120.0° |
| C2' | C1' | N1 | C6 | 77.5° | 115.3° |
| C2' | C1' | N1 | H6 | 119.1° | 120.9° |
| C2' | C1' | N1 | C2 | 100.7° | 64.5° |
| C1' | C2' | H7 | H8 | 122.6° | 122.6° |
| C1' | C2' | C3' | H9 | 85.3° | 97.3° |
| C5 | C6 | N1 | H1 | 180.0° | 180.0° |
| C5 | C6 | N1 | C1' | 179.5° | 180.0° |
| C5 | C6 | N1 | C2 | 1.2° | 0.3° |
| C6 | C5 | C4 | O4 | 179.8° | 180.0° |
| C6 | C5 | C4 | N3 | 0.1° | 0.3° |
| C6 | C5 | C5M | H2 | 180.0° | 180.0° |
| C6 | C5 | C5M | H3 | 60.0° | 60.1° |
| C6 | C5 | C5M | H4 | 60.0° | 59.9° |
| C6 | N1 | C1' | C2 | 178.2° | 179.7° |
| N1 | C6 | C5 | C4 | 1.2° | 0.0° |
| C6 | N1 | C2 | N3 | 0.0° | 0.3° |
| C6 | N1 | C2 | O2 | 178.3° | 179.7° |
| C6 | N1 | C1' | H6 | 163.4° | 5.7° |
| C1' | N1 | C2 | N3 | 178.2° | 180.0° |
| C1' | N1 | C2 | O2 | 0.1° | 0.0° |
| C1' | N1 | C6 | H1 | 0.6° | 0.0° |
| N1 | C1' | C2' | H7 | 19.7° | 119.9° |
| N1 | C1' | C2' | H8 | 141.5° | 2.7° |
| C5 | C4 | O4 | N3 | 179.8° | 179.8° |
| C5 | C4 | N3 | C2 | 1.3° | 0.3° |
| C4 | C5 | C6 | H1 | 178.8° | 180.0° |
| C4 | C5 | C5M | H2 | 0.3° | 0.0° |
| C4 | C5 | C5M | H3 | 120.4° | 120.0° |
| C4 | C5 | C5M | H4 | 119.7° | 120.0° |
| C5 | C4 | N3 | H5 | 178.6° | 179.8° |
| N1 | C2 | N3 | C4 | 1.3° | 0.0° |
| N1 | C2 | N3 | O2 | 178.3° | 180.0° |
| C2 | N1 | C6 | H1 | 178.8° | 179.7° |
| N1 | C2 | N3 | H5 | 178.6° | 180.0° |
| C2 | N1 | C1' | H6 | 18.4° | 174.6° |
| O4 | C4 | N3 | C2 | 178.5° | 180.0° |
| O4 | C4 | N3 | H5 | 1.5° | 0.0° |
| C4 | N3 | C2 | H5 | 180.0° | 180.0° |
| C4 | N3 | C2 | O2 | 179.6° | 180.0° |
| O2 | C2 | N3 | H5 | 0.3° | 0.0° |
| H2 | C5M | H3 | H4 | 120.0° | 120.1° |
| H6 | C1' | C2' | H7 | 99.5° | 1.1° |
| H6 | C1' | C2' | H8 | 22.2° | 123.6° |
| H7 | C2' | C3' | H9 | 33.9° | 144.0° |
| H8 | C2' | C3' | H9 | 155.6° | 21.5° |
| H9 | C3' | O3' | H10 | 56.2° | 62.2° |
| H9 | C3' | C4' | H11 | 155.0° | 160.3° |
| H11 | C4' | C5' | H12 | 55.7° | 68.0° |
| H11 | C4' | C5' | H13 | 64.7° | 172.0° |
