1FC
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O3' | C3' | sing | 1.43Å | 1.43Å | |
C3' | C4' | sing | 1.54Å | 1.52Å | |
C3' | C2' | sing | 1.55Å | 1.55Å | |
C4' | C5' | sing | 1.53Å | 1.52Å | |
C4' | O4' | sing | 1.44Å | 1.43Å | |
C2' | C1' | sing | 1.55Å | 1.53Å | |
C2' | F24 | sing | 1.40Å | 1.38Å | |
C5' | O5' | sing | 1.43Å | 1.42Å | |
C1' | O4' | sing | 1.44Å | 1.43Å | |
C1' | N1 | sing | 1.47Å | 1.48Å | |
O2 | C2 | doub | 1.22Å | 1.25Å | |
O5' | P | sing | 1.61Å | 1.69Å | |
C2 | N1 | sing | 1.34Å | 1.40Å | |
C2 | N3 | sing | 1.33Å | 1.35Å | |
N1 | C6 | sing | 1.35Å | 1.34Å | |
N3 | C4 | doub | 1.33Å | 1.34Å | |
P | OP2 | sing | 1.61Å | 1.64Å | |
P | OP1 | doub | 1.48Å | 1.63Å | |
C6 | C5 | doub | 1.38Å | 1.40Å | |
C4 | C5 | sing | 1.47Å | 1.40Å | |
C4 | N4 | sing | 1.37Å | 1.35Å | |
C5 | C21 | sing | 1.47Å | 1.53Å | |
C21 | O22 | doub | 1.22Å | 1.26Å | |
C21 | O23 | sing | 1.35Å | 1.26Å | |
C2' | H1 | sing | 1.09Å | 1.10Å | |
C3' | H2 | sing | 1.09Å | 1.10Å | |
O3' | H3 | sing | 0.97Å | 0.95Å | |
C4' | H4 | sing | 1.09Å | 1.10Å | |
C5' | H5 | sing | 1.09Å | 1.10Å | |
C5' | H6 | sing | 1.09Å | 1.10Å | |
OP2 | H7 | sing | 0.97Å | 0.95Å | |
C1' | H9 | sing | 1.09Å | 1.10Å | |
C6 | H10 | sing | 1.08Å | 1.08Å | |
O23 | H11 | sing | 0.97Å | 0.95Å | |
N4 | H12 | sing | 0.97Å | 1.00Å | |
N4 | H13 | sing | 0.97Å | 1.00Å | |
P | OP3 | sing | 1.61Å | 65.47Å | |
OP3 | H8 | sing | 0.97Å | 0.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O3' | C3' | C4' | 102.0° | 110.5° |
O3' | C3' | C2' | 116.6° | 110.5° |
O3' | C3' | H2 | 111.2° | 110.6° |
C3' | O3' | H3 | 109.5° | 114.0° |
C4' | C3' | C2' | 107.1° | 104.0° |
C3' | C4' | C5' | 110.6° | 110.4° |
C3' | C4' | O4' | 106.6° | 104.8° |
C4' | C3' | H2 | 109.9° | 110.5° |
C3' | C4' | H4 | 109.1° | 110.4° |
C3' | C2' | C1' | 102.4° | 104.0° |
C3' | C2' | F24 | 116.9° | 110.5° |
C3' | C2' | H1 | 107.6° | 110.6° |
C2' | C3' | H2 | 109.6° | 110.5° |
C5' | C4' | O4' | 111.0° | 110.4° |
C4' | C5' | O5' | 110.6° | 109.5° |
C5' | C4' | H4 | 109.1° | 110.3° |
C4' | C5' | H5 | 109.2° | 109.5° |
C4' | C5' | H6 | 109.2° | 109.5° |
C4' | O4' | C1' | 108.8° | 105.3° |
O4' | C4' | H4 | 110.4° | 110.4° |
C1' | C2' | F24 | 111.7° | 110.5° |
C2' | C1' | O4' | 109.5° | 104.8° |
C2' | C1' | N1 | 124.7° | 110.3° |
C1' | C2' | H1 | 107.9° | 110.5° |
C2' | C1' | H9 | 102.0° | 110.4° |
F24 | C2' | H1 | 109.8° | 110.5° |
C5' | O5' | P | 122.9° | 123.0° |
O5' | C5' | H5 | 109.2° | 109.5° |
O5' | C5' | H6 | 109.2° | 109.4° |
O4' | C1' | N1 | 112.3° | 110.3° |
O4' | C1' | H9 | 102.8° | 110.4° |
C1' | N1 | C2 | 119.4° | 119.4° |
C1' | N1 | C6 | 121.3° | 119.3° |
N1 | C1' | H9 | 102.3° | 110.4° |
O2 | C2 | N1 | 119.1° | 118.9° |
O2 | C2 | N3 | 120.9° | 118.9° |
O5' | P | OP2 | 112.8° | 109.4° |
O5' | P | OP1 | 119.8° | 109.4° |
O5' | P | OP3 | 112.7° | 109.5° |
N1 | C2 | N3 | 120.0° | 122.2° |
C2 | N1 | C6 | 118.7° | 121.3° |
C2 | N3 | C4 | 121.3° | 120.9° |
N1 | C6 | C5 | 121.9° | 118.9° |
N1 | C6 | H10 | 119.1° | 120.5° |
N3 | C4 | C5 | 120.9° | 118.6° |
N3 | C4 | N4 | 115.6° | 120.7° |
OP2 | P | OP1 | 112.1° | 109.5° |
P | OP2 | H7 | 109.5° | 114.0° |
OP2 | P | OP3 | 112.1° | 109.5° |
OP1 | P | OP3 | 84.2° | 109.5° |
C6 | C5 | C4 | 117.1° | 118.0° |
C6 | C5 | C21 | 118.7° | 121.0° |
C5 | C6 | H10 | 119.0° | 120.6° |
C5 | C4 | N4 | 123.6° | 120.7° |
C4 | C5 | C21 | 124.2° | 121.0° |
C4 | N4 | H12 | 120.0° | 120.0° |
C4 | N4 | H13 | 120.0° | 120.0° |
C5 | C21 | O22 | 118.1° | 120.0° |
C5 | C21 | O23 | 122.2° | 120.0° |
O22 | C21 | O23 | 119.7° | 120.0° |
C21 | O23 | H11 | 109.5° | 117.0° |
H5 | C5' | H6 | 109.5° | 109.5° |
H12 | N4 | H13 | 120.0° | 120.0° |
P | OP3 | H8 | 90.0° | 114.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O3' | C3' | C4' | C2' | 123.0° | 118.6° |
O3' | C3' | C4' | H2 | 118.1° | 122.8° |
O3' | C3' | C2' | H2 | 127.4° | 122.8° |
O3' | C3' | C4' | C5' | 101.1° | 98.6° |
O3' | C3' | C4' | O4' | 138.2° | 142.6° |
O3' | C3' | C2' | C1' | 115.0° | 118.6° |
O3' | C3' | C2' | F24 | 122.6° | 122.8° |
O3' | C3' | C2' | H1 | 1.4° | 0.0° |
O3' | C3' | C4' | H4 | 18.9° | 23.7° |
C4' | C3' | C2' | H2 | 119.2° | 118.6° |
C3' | C4' | C5' | O4' | 118.0° | 115.4° |
C3' | C4' | C5' | H4 | 120.0° | 122.3° |
C3' | C4' | O4' | H4 | 118.4° | 118.9° |
C4' | C3' | C2' | C1' | 1.5° | 0.0° |
C4' | C3' | C2' | F24 | 123.9° | 118.6° |
C3' | C4' | C5' | O5' | 144.9° | 175.0° |
C3' | C4' | O4' | C1' | 23.9° | 40.5° |
C4' | C3' | C2' | H1 | 112.0° | 118.7° |
C4' | C3' | O3' | H3 | 180.0° | 180.0° |
C3' | C4' | C5' | H5 | 94.9° | 55.0° |
C3' | C4' | C5' | H6 | 24.8° | 65.0° |
C2' | C3' | C4' | C5' | 135.9° | 142.8° |
C2' | C3' | C4' | O4' | 15.2° | 24.0° |
C3' | C2' | C1' | F24 | 125.9° | 118.6° |
C3' | C2' | C1' | H1 | 113.3° | 118.7° |
C3' | C2' | F24 | H1 | 122.9° | 122.8° |
C3' | C2' | C1' | O4' | 12.9° | 24.0° |
C3' | C2' | C1' | N1 | 150.2° | 142.8° |
C2' | C3' | O3' | H3 | 63.8° | 65.4° |
C2' | C3' | C4' | H4 | 104.1° | 95.0° |
C3' | C2' | C1' | H9 | 95.5° | 94.9° |
C5' | C4' | O4' | H4 | 121.1° | 122.2° |
C4' | C5' | O5' | H5 | 120.2° | 120.0° |
C4' | C5' | O5' | H6 | 120.2° | 120.0° |
C5' | C4' | O4' | C1' | 144.3° | 159.4° |
C4' | C5' | O5' | P | 149.1° | 180.0° |
C5' | C4' | C3' | H2 | 17.0° | 24.2° |
C4' | C5' | H5 | H6 | 119.5° | 120.0° |
C4' | O4' | C1' | C2' | 23.6° | 40.5° |
O4' | C4' | C5' | O5' | 26.9° | 69.6° |
C4' | O4' | C1' | N1 | 166.5° | 159.3° |
O4' | C4' | C3' | H2 | 103.7° | 94.7° |
O4' | C4' | C5' | H5 | 147.0° | 170.4° |
O4' | C4' | C5' | H6 | 93.3° | 50.4° |
C4' | O4' | C1' | H9 | 84.2° | 78.3° |
C1' | C2' | F24 | H1 | 119.6° | 122.6° |
C2' | C1' | O4' | N1 | 142.9° | 118.8° |
C2' | C1' | O4' | H9 | 107.8° | 118.9° |
C2' | C1' | N1 | H9 | 114.2° | 122.3° |
C2' | C1' | N1 | C2 | 59.2° | 65.3° |
C2' | C1' | N1 | C6 | 129.6° | 115.0° |
C1' | C2' | C3' | H2 | 117.7° | 118.6° |
F24 | C2' | C1' | O4' | 113.0° | 94.6° |
F24 | C2' | C1' | N1 | 24.2° | 24.2° |
F24 | C2' | C3' | H2 | 4.7° | 0.0° |
F24 | C2' | C1' | H9 | 138.6° | 146.5° |
C5' | O5' | P | OP2 | 147.8° | 65.0° |
C5' | O5' | P | OP1 | 76.8° | 55.0° |
O5' | C5' | C4' | H4 | 95.0° | 52.7° |
O5' | C5' | H5 | H6 | 119.5° | 119.9° |
C5' | O5' | P | OP3 | 19.7° | 175.0° |
O4' | C1' | N1 | H9 | 109.6° | 122.4° |
O4' | C1' | N1 | C2 | 164.5° | 50.1° |
O4' | C1' | N1 | C6 | 6.7° | 129.7° |
O4' | C1' | C2' | H1 | 126.2° | 142.8° |
C1' | O4' | C4' | H4 | 94.5° | 78.4° |
C1' | N1 | C2 | O2 | 6.3° | 0.0° |
C1' | N1 | C2 | C6 | 171.4° | 179.8° |
C1' | N1 | C2 | N3 | 174.8° | 179.7° |
C1' | N1 | C6 | C5 | 175.4° | 180.0° |
N1 | C1' | C2' | H1 | 96.5° | 98.5° |
C1' | N1 | C6 | H10 | 4.6° | 0.0° |
O2 | C2 | N1 | N3 | 178.9° | 179.8° |
O2 | C2 | N1 | C6 | 177.7° | 179.7° |
O2 | C2 | N3 | C4 | 179.9° | 179.7° |
O5' | P | OP2 | OP1 | 138.9° | 120.0° |
O5' | P | OP2 | OP3 | 128.4° | 120.0° |
O5' | P | OP1 | OP3 | 112.8° | 120.0° |
P | O5' | C5' | H5 | 90.8° | 60.0° |
P | O5' | C5' | H6 | 28.9° | 60.0° |
O5' | P | OP2 | H7 | 138.9° | 60.0° |
O5' | P | OP3 | H8 | 90.0° | 180.0° |
N1 | C2 | N3 | C4 | 1.2° | 0.5° |
C2 | N1 | C6 | C5 | 4.1° | 0.2° |
C2 | N1 | C1' | H9 | 55.0° | 172.5° |
C2 | N1 | C6 | H10 | 175.9° | 179.7° |
N3 | C2 | N1 | C6 | 3.4° | 0.5° |
C2 | N3 | C4 | C5 | 0.3° | 0.2° |
C2 | N3 | C4 | N4 | 179.2° | 179.7° |
N1 | C6 | C5 | H10 | 180.0° | 179.9° |
N1 | C6 | C5 | C4 | 2.6° | 0.1° |
N1 | C6 | C5 | C21 | 177.9° | 180.0° |
C6 | N1 | C1' | H9 | 116.2° | 7.3° |
N3 | C4 | C5 | C6 | 0.3° | 0.1° |
N3 | C4 | C5 | N4 | 179.4° | 179.9° |
N3 | C4 | C5 | C21 | 179.8° | 180.0° |
N3 | C4 | N4 | H12 | 0.0° | 174.6° |
N3 | C4 | N4 | H13 | 180.0° | 5.4° |
OP2 | P | OP1 | OP3 | 111.5° | 120.1° |
OP2 | P | OP3 | H8 | 90.0° | 60.0° |
OP1 | P | OP2 | H7 | 0.0° | 180.0° |
OP1 | P | OP3 | H8 | 90.0° | 60.1° |
C6 | C5 | C4 | C21 | 179.5° | 179.9° |
C6 | C5 | C4 | N4 | 179.7° | 180.0° |
C6 | C5 | C21 | O22 | 16.8° | 5.6° |
C6 | C5 | C21 | O23 | 163.2° | 174.3° |
C4 | C5 | C21 | O22 | 163.8° | 174.3° |
C4 | C5 | C21 | O23 | 16.3° | 5.7° |
C4 | C5 | C6 | H10 | 177.4° | 180.0° |
C5 | C4 | N4 | H12 | 179.5° | 5.4° |
C5 | C4 | N4 | H13 | 0.5° | 174.7° |
N4 | C4 | C5 | C21 | 0.8° | 0.0° |
C4 | N4 | H12 | H13 | 180.0° | 180.0° |
C5 | C21 | O22 | O23 | 180.0° | 179.9° |
C21 | C5 | C6 | H10 | 2.1° | 0.0° |
C5 | C21 | O23 | H11 | 179.9° | 180.0° |
O22 | C21 | O23 | H11 | 0.0° | 0.0° |
H1 | C2' | C3' | H2 | 128.8° | 122.7° |
H1 | C2' | C1' | H9 | 17.8° | 23.8° |
H2 | C3' | O3' | H3 | 62.8° | 57.3° |
H2 | C3' | C4' | H4 | 137.0° | 146.4° |
H4 | C4' | C5' | H5 | 25.1° | 67.3° |
H4 | C4' | C5' | H6 | 144.8° | 172.7° |
H7 | OP2 | P | OP3 | 92.7° | 60.0° |