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SummaryGeometryRelated PDB entries

1EK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O19C17doub1.21Å1.27Å
O18C17sing1.34Å1.26Å
C17C16sing1.51Å1.48Å
C23C24doub1.38Å1.40ÅAromatic
C23C22sing1.38Å1.39ÅAromatic
C24C25sing1.38Å1.39ÅAromatic
C22C21doub1.38Å1.40ÅAromatic
S15C16sing1.81Å1.76Å
S15C12sing1.76Å1.75Å
C25C20doub1.39Å1.39ÅAromatic
C21C20sing1.39Å1.39ÅAromatic
C20N11sing1.40Å1.43Å
C12N11sing1.37Å1.37ÅAromatic
C12N13doub1.32Å1.33ÅAromatic
N11C10sing1.38Å1.38ÅAromatic
N13N14sing1.28Å1.32ÅAromatic
C10N14doub1.32Å1.34ÅAromatic
C10C08sing1.47Å1.49Å
C08C09doub1.34Å1.40ÅAromatic
C08S07sing1.75Å1.68ÅAromatic
CL2C09sing1.74Å1.73Å
C09C04sing1.45Å1.44ÅAromatic
S07C03sing1.76Å1.70ÅAromatic
C04C03doub1.40Å1.40ÅAromatic
C04C05sing1.41Å1.39ÅAromatic
C03C02sing1.40Å1.40ÅAromatic
C05C06doub1.36Å1.39ÅAromatic
C02C01doub1.38Å1.39ÅAromatic
C06C01sing1.39Å1.40ÅAromatic
C01H1sing1.08Å1.08Å
C02H2sing1.08Å1.08Å
C05H3sing1.08Å1.08Å
C06H4sing1.08Å1.08Å
C16H5sing1.09Å1.10Å
C16H6sing1.09Å1.10Å
O18H7sing0.97Å0.95Å
C21H8sing1.08Å1.08Å
C22H9sing1.08Å1.08Å
C23H10sing1.08Å1.08Å
C24H11sing1.08Å1.08Å
C25H12sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O19C17O18122.8°120.0°
O19C17C16116.8°120.0°
O18C17C16120.4°120.0°
C17O18H7109.5°117.0°
C17C16S15109.3°109.5°
C17C16H5109.5°109.5°
C17C16H6109.5°109.5°
C24C23C22120.3°120.1°
C23C24C25119.2°120.1°
C24C23H10119.9°119.9°
C23C24H11120.4°120.0°
C23C22C21120.4°120.0°
C23C22H9119.8°120.0°
C22C23H10119.8°119.9°
C24C25C20120.5°119.9°
C25C24H11120.4°119.9°
C24C25H12119.8°120.1°
C22C21C20119.1°119.9°
C22C21H8120.4°120.0°
C21C22H9119.8°120.0°
C16S15C12103.2°100.0°
S15C16H5109.5°109.4°
S15C16H6109.5°109.5°
S15C12N11126.3°126.4°
S15C12N13124.3°126.4°
C25C20C21120.5°119.9°
C25C20N11119.1°120.0°
C20C25H12119.8°120.0°
C21C20N11120.4°120.1°
C20C21H8120.5°120.1°
C20N11C12124.1°127.2°
C20N11C10131.1°127.2°
N11C12N13109.4°107.3°
C12N11C10104.8°105.5°
C12N13N14108.4°110.2°
N11C10N14108.3°107.0°
N11C10C08129.2°126.5°
N13N14C10109.1°110.0°
N14C10C08122.5°126.5°
C10C08C09126.4°124.4°
C10C08S07126.8°124.4°
C09C08S07106.8°111.2°
C08C09CL2123.9°122.7°
C08C09C04114.1°114.6°
C08S07C0399.1°92.3°
CL2C09C04122.0°122.7°
C09C04C03113.6°112.0°
C09C04C05125.5°129.1°
S07C03C04106.4°109.9°
S07C03C02133.4°130.4°
C03C04C05120.9°118.8°
C04C03C02120.2°119.7°
C04C05C06118.3°120.4°
C04C05H3120.9°119.9°
C03C02C01119.4°120.2°
C03C02H2120.3°119.9°
C05C06C01121.4°120.5°
C06C05H3120.9°119.7°
C05C06H4119.3°119.8°
C02C01C06119.8°120.3°
C02C01H1120.1°119.9°
C01C02H2120.3°119.9°
C06C01H1120.1°119.8°
C01C06H4119.3°119.7°
H5C16H6109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O19C17O18C16179.1°180.0°
O19C17C16S152.6°0.0°
O19C17C16H5122.5°119.9°
O19C17C16H6117.4°120.1°
O19C17O18H70.0°0.0°
O18C17C16S15176.6°180.0°
O18C17C16H556.6°60.0°
O18C17C16H663.5°60.0°
C17C16S15H5120.0°120.0°
C17C16S15H6120.0°120.0°
C17C16S15C12169.2°180.0°
C17C16H5H6120.1°120.0°
C16C17O18H7179.0°180.0°
C24C23C22H10180.0°179.7°
C23C24C25H11180.0°179.7°
C24C23C22C210.2°0.0°
C23C24C25C201.0°0.6°
C24C23C22H9179.8°179.9°
C23C24C25H12179.0°180.0°
C22C23C24C250.4°0.3°
C23C22C21H9180.0°179.9°
C23C22C21C200.6°0.1°
C23C22C21H8179.4°180.0°
C22C23C24H11179.6°180.0°
C24C25C20H12180.0°179.5°
C24C25C20C211.3°0.5°
C24C25C20N11179.7°179.8°
C25C24C23H10179.5°180.0°
C22C21C20C251.1°0.2°
C22C21C20H8180.0°179.9°
C22C21C20N11179.5°179.9°
C21C22C23H10179.7°179.6°
C16S15C12N11163.3°180.0°
C16S15C12N1316.5°0.0°
S15C16H5H6120.1°120.0°
S15C12N11C200.8°0.1°
S15C12N11N13179.8°179.9°
S15C12N11C10179.7°180.0°
S15C12N13N14180.0°180.0°
C12S15C16H570.8°60.0°
C12S15C16H649.3°60.0°
C25C20C21N11178.4°179.7°
C25C20N11C12114.6°114.8°
C25C20N11C1063.9°65.4°
C25C20C21H8178.9°179.7°
C20C25C24H11179.0°179.7°
C21C20N11C1263.8°65.0°
C21C20N11C10117.7°114.9°
C20C21C22H9179.5°179.9°
C21C20C25H12178.7°180.0°
C20N11C12C10178.8°179.9°
C20N11C12N13178.9°180.0°
C20N11C10N14179.1°180.0°
C20N11C10C081.9°0.2°
N11C20C21H80.5°0.0°
N11C20C25H120.3°0.3°
N11C12N13N140.2°0.1°
C12N11C10N140.4°0.1°
C12N11C10C08179.4°179.8°
N13C12N11C100.1°0.1°
C12N13N14C100.4°0.0°
N11C10N14N130.5°0.0°
N11C10N14C08179.1°179.8°
N11C10C08C0956.2°179.7°
N11C10C08S07127.3°0.3°
N13N14C10C08179.6°179.8°
N14C10C08C09122.7°0.1°
N14C10C08S0753.8°180.0°
C10C08C09S07177.1°180.0°
C10C08C09CL22.4°0.0°
C10C08C09C04178.2°180.0°
C10C08S07C03178.2°180.0°
C08C09CL2C04179.4°179.9°
C09C08S07C031.1°0.0°
C08C09C04C030.6°0.0°
C08C09C04C05179.4°180.0°
S07C08C09CL2179.5°180.0°
S07C08C09C041.1°0.0°
C08S07C03C040.8°0.0°
C08S07C03C02178.7°179.9°
CL2C09C04C03180.0°180.0°
CL2C09C04C050.0°0.1°
C09C04C03S070.3°0.0°
C09C04C03C05180.0°179.9°
C09C04C03C02179.3°179.9°
C09C04C05C06179.6°179.8°
C09C04C05H30.4°0.1°
S07C03C04C02179.6°179.9°
S07C03C04C05179.7°179.9°
S07C03C02C01180.0°180.0°
S07C03C02H20.0°0.1°
C03C04C05C060.4°0.2°
C04C03C02C010.5°0.1°
C04C03C02H2179.4°180.0°
C03C04C05H3179.6°180.0°
C05C04C03C020.7°0.0°
C04C05C06H3180.0°179.8°
C04C05C06C010.0°0.4°
C04C05C06H4180.0°180.0°
C03C02C01H2180.0°179.9°
C03C02C01C060.1°0.3°
C03C02C01H1179.9°179.9°
C05C06C01C020.2°0.5°
C05C06C01H4180.0°179.6°
C05C06C01H1179.9°179.8°
C02C01C06H1180.0°179.7°
C02C01C06H4179.9°179.9°
C06C01C02H2179.8°179.8°
C01C06C05H3180.0°179.7°
H1C01C02H20.2°0.0°
H1C01C06H40.1°0.2°
H3C05C06H40.0°0.1°
H8C21C22H90.6°0.1°
H9C22C23H100.2°0.2°
H10C23C24H110.5°0.3°
H11C24C25H121.0°0.3°

221051

PDB entries from 2024-06-12

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