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SummaryGeometryRelated PDB entries

1DU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAECAFsing1.53Å1.51Å
CAEOAAsing1.43Å1.37Å
CAFNAHsing1.46Å1.44Å
CADNAHsing1.35Å1.29ÅAromatic
CADCABdoub1.35Å1.31ÅAromatic
NAHNAGsing1.40Å1.22ÅAromatic
CABCACsing1.40Å1.32ÅAromatic
NAGCACdoub1.31Å1.30ÅAromatic
CADH1sing1.08Å1.08Å
CABH2sing1.08Å1.08Å
CACH3sing1.08Å1.08Å
CAFH4sing1.09Å1.10Å
CAFH5sing1.09Å1.10Å
CAEH6sing1.09Å1.10Å
CAEH7sing1.09Å1.10Å
OAAH8sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAFCAEOAA106.6°109.5°
CAECAFNAH112.5°109.5°
CAECAFH4108.7°109.4°
CAECAFH5108.7°109.5°
CAFCAEH6110.2°109.4°
CAFCAEH7110.2°109.5°
OAACAEH6110.2°109.5°
OAACAEH7110.2°109.5°
CAEOAAH8109.5°114.0°
CAFNAHCAD123.1°126.0°
CAFNAHNAG126.0°126.0°
NAHCAFH4108.7°109.5°
NAHCAFH5108.7°109.5°
NAHCADCAB106.8°107.7°
CADNAHNAG110.7°107.9°
NAHCADH1126.6°126.2°
CADCABCAC106.0°108.0°
CABCADH1126.6°126.1°
CADCABH2127.0°126.0°
NAHNAGCAC108.9°108.2°
CABCACNAG107.5°108.2°
CACCABH2127.0°126.0°
CABCACH3126.3°125.9°
NAGCACH3126.3°125.9°
H4CAFH5109.5°109.4°
H6CAEH7109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAFCAEOAAH6119.5°120.0°
CAFCAEOAAH7119.6°120.0°
CAECAFNAHH4120.4°120.0°
CAECAFNAHH5120.4°120.0°
CAECAFNAHCAD145.2°125.0°
CAECAFNAHNAG39.7°55.0°
CAECAFH4H5118.6°120.0°
CAFCAEH6H7121.3°120.0°
CAFCAEOAAH8180.0°179.9°
OAACAECAFNAH68.2°180.0°
OAACAECAFH4171.3°59.9°
OAACAECAFH552.2°60.0°
OAACAEH6H7121.3°120.0°
CAFNAHCADNAG175.7°180.0°
CAFNAHCADCAB177.8°180.0°
CAFNAHNAGCAC177.1°180.0°
CAFNAHCADH12.3°0.3°
NAHCAFH4H5118.6°120.0°
NAHCAFCAEH6172.2°60.0°
NAHCAFCAEH751.3°60.0°
NAHCADCABH1180.0°179.7°
NAHCADCABCAC1.7°0.0°
CADNAHNAGCAC1.6°0.0°
NAHCADCABH2178.4°180.0°
CADNAHCAFH424.8°115.0°
CADNAHCAFH594.3°5.0°
CABCADNAHNAG2.0°0.0°
CADCABCACH2180.0°180.0°
CADCABCACNAG0.8°0.0°
CADCABCACH3179.2°180.0°
NAHNAGCACCAB0.5°0.0°
NAGNAHCADH1178.0°179.7°
NAHNAGCACH3179.6°180.0°
NAGNAHCAFH4160.1°65.0°
NAGNAHCAFH580.7°175.0°
CABCACNAGH3180.0°180.0°
CACCABCADH1178.4°179.7°
NAGCACCABH2179.3°180.0°
H1CADCABH21.6°0.3°
H2CABCACH30.8°0.0°
H4CAFCAEH651.8°180.0°
H4CAFCAEH769.1°60.1°
H5CAFCAEH667.3°60.0°
H5CAFCAEH7171.8°180.0°
H6CAEOAAH860.5°60.0°
H7CAEOAAH860.4°60.0°

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PDB entries from 2024-07-17

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