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SummaryGeometryRelated PDB entries

1DQ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
FABCAIsing1.40Å1.33Å
NAFCADsing1.35Å1.34ÅAromatic
NAFCAHsing1.37Å1.32ÅAromatic
CADNAGdoub1.30Å1.34ÅAromatic
CAHCAIsing1.51Å1.53Å
CAHCAEdoub1.35Å1.34ÅAromatic
CAIFACsing1.40Å1.32Å
CAIFAAsing1.40Å1.34Å
NAGCAEsing1.34Å1.32ÅAromatic
CAEH1sing1.08Å1.08Å
CADH3sing1.08Å1.08Å
NAFH4sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
FABCAICAH108.1°109.5°
FABCAIFAC107.3°109.5°
FABCAIFAA109.0°109.4°
CADNAFCAH107.1°107.2°
NAFCADNAG108.2°108.7°
NAFCADH3125.9°125.6°
CADNAFH4126.4°126.4°
NAFCAHCAI122.9°126.6°
NAFCAHCAE109.4°106.8°
CAHNAFH4126.5°126.4°
CADNAGCAE108.1°109.2°
NAGCADH3125.9°125.7°
CAICAHCAE127.7°126.6°
CAHCAIFAC110.7°109.5°
CAHCAIFAA113.0°109.5°
CAHCAENAG107.2°108.1°
CAHCAEH1126.4°125.9°
FACCAIFAA108.5°109.5°
NAGCAEH1126.4°126.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
FABCAICAHNAF56.9°150.3°
FABCAICAHFAC117.3°120.0°
FABCAICAHFAA120.7°120.0°
FABCAICAHCAE123.1°30.1°
FABCAIFACFAA117.6°120.0°
CADNAFCAHH4180.0°179.7°
NAFCADNAGH3180.0°179.9°
CADNAFCAHCAI179.7°179.9°
CADNAFCAHCAE0.3°0.3°
NAFCADNAGCAE0.3°0.2°
CAHNAFCADNAG0.0°0.3°
NAFCAHCAICAE180.0°179.7°
NAFCAHCAIFAC60.3°89.7°
NAFCAHCAIFAA177.6°30.3°
NAFCAHCAENAG0.5°0.2°
NAFCAHCAEH1179.4°179.8°
CAHNAFCADH3180.0°179.8°
CADNAGCAECAH0.5°0.0°
CADNAGCAEH1179.4°180.0°
NAGCADNAFH4180.0°180.0°
CAHCAIFACFAA124.6°120.0°
CAICAHCAENAG179.5°180.0°
CAICAHCAEH10.6°0.0°
CAICAHNAFH40.3°0.2°
CAECAHCAIFAC119.6°90.0°
CAECAHCAIFAA2.4°150.0°
CAHCAENAGH1180.0°180.0°
CAECAHNAFH4179.7°180.0°
CAENAGCADH3179.6°179.9°
H3CADNAFH40.0°0.1°

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PDB entries from 2024-08-14

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