Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1DN

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C24S23sing1.76Å1.73ÅAromatic
C24C25doub1.34Å1.40ÅAromatic
S23C22sing1.76Å1.72ÅAromatic
C25N26sing1.31Å1.38ÅAromatic
N26C22doub1.30Å1.35ÅAromatic
C22C17sing1.47Å1.49Å
N16C17doub1.31Å1.35ÅAromatic
N16C15sing1.35Å1.36ÅAromatic
C17N13sing1.37Å1.33ÅAromatic
C15C21doub1.40Å1.39ÅAromatic
C15C14sing1.41Å1.50ÅAromatic
C21C20sing1.38Å1.40ÅAromatic
N13C14sing1.38Å1.34ÅAromatic
N13C9sing1.40Å1.35Å
C14C18doub1.39Å1.40ÅAromatic
C10C9doub1.38Å1.41ÅAromatic
C10C5sing1.40Å1.40ÅAromatic
C9C8sing1.40Å1.40ÅAromatic
C30O29sing1.43Å1.43Å
C20O29sing1.36Å1.38Å
C20C19doub1.40Å1.49ÅAromatic
N4C5doub1.34Å1.36ÅAromatic
N4C3sing1.32Å1.36ÅAromatic
C5C6sing1.42Å1.48ÅAromatic
C8C7doub1.36Å1.39ÅAromatic
C18C19sing1.38Å1.40ÅAromatic
N12C3sing1.38Å1.36Å
C3N2doub1.33Å1.36ÅAromatic
C19O27sing1.36Å1.38Å
C6C7sing1.40Å1.39ÅAromatic
C6C1doub1.42Å1.49ÅAromatic
N2C1sing1.33Å1.35ÅAromatic
C1N11sing1.38Å1.35Å
O27C28sing1.43Å1.43Å
N12H1sing0.97Å1.00Å
N12H2sing0.97Å1.00Å
C10H3sing1.08Å1.08Å
C8H4sing1.08Å1.08Å
C7H5sing1.08Å1.08Å
N11H6sing0.97Å1.00Å
N11H7sing0.97Å1.00Å
C25H8sing1.08Å1.08Å
C24H9sing1.08Å1.08Å
C21H10sing1.08Å1.08Å
C30H11sing1.09Å1.10Å
C30H12sing1.09Å1.10Å
C30H13sing1.09Å1.10Å
C18H14sing1.08Å1.08Å
C28H15sing1.09Å1.10Å
C28H16sing1.09Å1.10Å
C28H17sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
S23C24C25106.9°108.2°
C24S23C2292.2°89.8°
S23C24H9126.5°125.9°
C24C25N26117.1°115.8°
C24C25H8121.5°122.1°
C25C24H9126.5°125.9°
S23C22N26113.0°109.0°
S23C22C17121.3°125.5°
C25N26C22110.7°117.1°
N26C25H8121.5°122.1°
N26C22C17125.6°125.5°
C22C17N16119.8°125.1°
C22C17N13127.3°125.2°
C17N16C15105.7°109.7°
N16C17N13112.9°109.6°
N16C15C21132.1°133.2°
N16C15C14107.8°107.3°
C17N13C14109.5°107.1°
C17N13C9129.3°126.4°
C21C15C14120.1°119.5°
C15C21C20120.0°119.8°
C15C21H10120.0°120.1°
C15C14N13104.0°106.2°
C15C14C18120.1°120.0°
C21C20O29120.8°119.8°
C21C20C19120.0°120.4°
C20C21H10120.0°120.1°
C14N13C9121.1°126.4°
N13C14C18135.8°133.8°
N13C9C10124.4°119.6°
N13C9C8119.5°119.7°
C14C18C19119.6°119.9°
C14C18H14120.2°120.0°
C9C10C5122.3°119.4°
C10C9C8116.0°120.7°
C9C10H3118.8°120.3°
C10C5N4123.1°121.8°
C10C5C6119.0°119.4°
C5C10H3118.9°120.3°
C9C8C7125.2°120.8°
C9C8H4117.4°119.6°
C30O29C20121.3°117.0°
O29C30H11109.5°109.4°
O29C30H12109.5°109.4°
O29C30H13109.5°109.5°
O29C20C19119.3°119.8°
C20C19C18120.2°120.3°
C20C19O27118.6°119.8°
C5N4C3121.8°120.4°
N4C5C6117.9°118.8°
N4C3N12118.6°118.6°
N4C3N2122.8°122.7°
C5C6C7119.0°119.9°
C5C6C1117.9°118.3°
C8C7C6118.6°119.8°
C7C8H4117.4°119.6°
C8C7H5120.7°120.1°
C18C19O27121.2°119.9°
C19C18H14120.2°120.1°
N12C3N2118.6°118.7°
C3N12H1109.5°119.9°
C3N12H2109.4°120.0°
C3N2C1121.6°121.5°
C19O27C28121.5°117.0°
C7C6C1123.1°121.9°
C6C7H5120.7°120.1°
C6C1N2118.0°118.4°
C6C1N11120.7°120.8°
N2C1N11121.2°120.8°
C1N11H6109.5°120.0°
C1N11H7109.5°120.0°
O27C28H15109.5°109.5°
O27C28H16109.5°109.5°
O27C28H17109.5°109.5°
H1N12H2109.5°120.0°
H6N11H7109.5°120.0°
H11C30H12109.5°109.5°
H11C30H13109.5°109.4°
H12C30H13109.4°109.6°
H15C28H16109.5°109.5°
H15C28H17109.5°109.4°
H16C28H17109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
S23C24C25H9180.0°179.7°
S23C24C25N260.0°0.2°
C24S23C22N261.1°0.3°
C24S23C22C17178.4°179.9°
S23C24C25H8180.0°179.7°
C25C24S23C220.6°0.3°
C24C25N26H8180.0°180.0°
C24C25N26C220.7°0.0°
S23C22N26C251.2°0.2°
S23C22N26C17177.3°179.8°
S23C22C17N1614.4°179.7°
S23C22C17N13165.2°0.2°
C22S23C24H9179.4°180.0°
C25N26C22C17178.4°180.0°
N26C25C24H9180.0°179.9°
N26C22C17N16168.5°0.1°
N26C22C17N1311.8°180.0°
C22N26C25H8179.3°179.9°
C22C17N16N13179.7°180.0°
C22C17N16C15178.8°180.0°
C22C17N13C14177.9°180.0°
C22C17N13C92.9°0.3°
C17N16C15C21179.6°179.9°
C17N16C15C140.3°0.0°
N16C17N13C141.8°0.0°
N16C17N13C9176.8°179.8°
C15N16C17N130.9°0.0°
N16C15C21C14179.9°180.0°
N16C15C21C20179.9°179.9°
N16C15C14N131.3°0.0°
N16C15C14C18179.8°179.9°
N16C15C21H100.1°0.1°
C17N13C14C151.8°0.0°
C17N13C14C9175.5°179.8°
C17N13C14C18180.0°179.9°
C17N13C9C10116.0°64.7°
C17N13C9C867.2°115.3°
C15C21C20H10180.0°180.0°
C21C15C14N13178.7°179.9°
C21C15C14C180.1°0.0°
C15C21C20O29180.0°180.0°
C15C21C20C190.1°0.0°
C14C15C21C200.0°0.0°
C15C14N13C18178.2°179.9°
C15C14N13C9177.3°179.8°
C15C14C18C190.3°0.0°
C14C15C21H10180.0°180.0°
C15C14C18H14179.7°180.0°
C21C20O29C3029.7°0.1°
C21C20O29C19179.9°180.0°
C21C20C19C180.3°0.0°
C21C20C19O27179.9°179.9°
C14N13C9C1069.4°115.1°
C14N13C9C8107.4°65.0°
N13C14C18C19178.3°179.9°
N13C14C18H141.7°0.2°
C9N13C14C184.5°0.1°
N13C9C10C8176.9°180.0°
N13C9C10C5177.7°180.0°
N13C9C8C7178.0°179.9°
N13C9C10H32.3°0.0°
N13C9C8H42.0°0.1°
C14C18C19C200.4°0.0°
C14C18C19H14180.0°179.9°
C14C18C19O27180.0°179.9°
C9C10C5H3180.0°180.0°
C9C10C5N4179.3°180.0°
C9C10C5C60.4°0.0°
C10C9C8C70.9°0.1°
C10C9C8H4179.1°179.9°
C5C10C9C80.8°0.0°
C10C5N4C6179.6°179.9°
C10C5N4C3179.9°179.9°
C10C5C6C70.1°0.0°
C10C5C6C1179.9°179.8°
C9C8C7H4180.0°179.9°
C9C8C7C60.5°0.1°
C8C9C10H3179.2°180.0°
C9C8C7H5179.5°180.0°
C30O29C20C19150.2°179.9°
O29C30H11H12120.0°120.0°
O29C30H11H13120.0°119.9°
O29C30H12H13120.0°120.0°
O29C20C19C18179.8°180.0°
O29C20C19O270.2°0.1°
O29C20C21H100.0°0.0°
C20O29C30H11180.0°60.1°
C20O29C30H1260.0°59.9°
C20O29C30H1360.0°180.0°
C20C19C18O27179.6°179.9°
C20C19O27C28159.9°180.0°
C19C20C21H10179.9°180.0°
C20C19C18H14179.6°180.0°
C5N4C3N12179.4°179.9°
C5N4C3N20.1°0.3°
N4C5C6C7179.8°180.0°
N4C5C6C10.4°0.2°
N4C5C10H30.8°0.1°
C3N4C5C60.5°0.0°
N4C3N12N2179.3°179.7°
N4C3N2C10.8°0.3°
N4C3N12H10.0°179.7°
N4C3N12H2120.0°0.6°
C5C6C7C80.1°0.1°
C5C6C7C1179.8°179.7°
C5C6C1N20.2°0.2°
C5C6C1N11179.8°179.8°
C6C5C10H3179.6°180.0°
C5C6C7H5179.9°180.0°
C8C7C6H5180.0°179.9°
C8C7C6C1179.9°179.8°
C18C19O27C2820.6°0.1°
N12C3N2C1180.0°180.0°
C3N12H1H2120.0°179.7°
C3N2C1C60.8°0.0°
C3N2C1N11179.2°180.0°
N2C3N12H1179.3°0.0°
N2C3N12H260.7°179.7°
O27C19C18H140.0°0.0°
C19O27C28H15180.0°60.0°
C19O27C28H1660.0°60.0°
C19O27C28H1760.0°180.0°
C7C6C1N2179.6°180.0°
C7C6C1N110.4°0.0°
C6C7C8H4179.5°180.0°
C6C1N2N11180.0°180.0°
C1C6C7H50.1°0.3°
C6C1N11H6180.0°180.0°
C6C1N11H760.0°0.0°
N2C1N11H60.0°0.0°
N2C1N11H7120.0°180.0°
C1N11H6H7120.0°180.0°
O27C28H15H16120.0°120.0°
O27C28H15H17120.0°120.0°
O27C28H16H17120.0°120.0°
H4C8C7H50.5°0.2°
H8C25C24H90.0°0.0°
H11C30H12H13120.0°120.0°
H15C28H16H17120.0°120.0°

248636

PDB entries from 2026-02-04

PDB statisticsPDBj update infoContact PDBjnumon