Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1DL

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CAACAXsing1.51Å1.41Å
CAKCAXdoub1.38Å1.39ÅAromatic
CAKCANsing1.38Å1.40ÅAromatic
CAXCBCsing1.40Å1.40ÅAromatic
CANCBBdoub1.39Å1.41ÅAromatic
OAECASdoub1.21Å1.24Å
CBCCASsing1.48Å1.40Å
CBCCAQdoub1.39Å1.39ÅAromatic
CASOABsing1.35Å1.25Å
CBBCAQsing1.39Å1.39ÅAromatic
CBBNBEsing1.40Å1.35Å
NBECAVsing1.35Å1.34Å
NBECBDsing1.47Å1.48Å
OADCAVdoub1.21Å1.24Å
CAVCAUsing1.48Å1.35Å
CBDCAWsing1.51Å1.41Å
CBDCBAsing1.51Å1.43Å
CAUCAWdoub1.35Å1.35Å
CAUOAFsing1.35Å1.35Å
CAWCATsing1.46Å1.37Å
CAPCBAdoub1.33Å1.35ÅAromatic
CAPCAYsing1.38Å1.36ÅAromatic
CBASARsing1.76Å1.69ÅAromatic
OACCATdoub1.22Å1.23Å
CATCAZsing1.48Å1.41Å
CAYBRAsing1.89Å1.93Å
CAYCAOdoub1.33Å1.32ÅAromatic
CAZCALdoub1.40Å1.39ÅAromatic
CAZCAMsing1.40Å1.41ÅAromatic
CALCAIsing1.38Å1.40ÅAromatic
SARCAOsing1.76Å1.69ÅAromatic
CAMCAJdoub1.38Å1.41ÅAromatic
CAICAHdoub1.38Å1.40ÅAromatic
CAJCAHsing1.38Å1.40ÅAromatic
OABH1sing0.97Å0.95Å
CAQH2sing1.08Å1.08Å
CAAH3sing1.09Å1.10Å
CAAH4sing1.09Å1.10Å
CAAH5sing1.09Å1.10Å
CAKH6sing1.08Å1.08Å
CANH7sing1.08Å1.08Å
CBDH8sing1.09Å1.10Å
CAOH9sing1.08Å1.08Å
CAPH10sing1.08Å1.08Å
OAFH11sing0.97Å0.95Å
CALH12sing1.08Å1.08Å
CAIH13sing1.08Å1.08Å
CAHH14sing1.08Å1.08Å
CAJH15sing1.08Å1.08Å
CAMH16sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CAACAXCAK119.3°119.9°
CAACAXCBC121.6°120.0°
CAXCAAH3109.5°109.5°
CAXCAAH4109.4°109.5°
CAXCAAH5109.4°109.5°
CAXCAKCAN121.5°120.2°
CAKCAXCBC119.1°120.1°
CAXCAKH6119.3°119.9°
CAKCANCBB119.5°120.2°
CANCAKH6119.2°119.9°
CAKCANH7120.3°119.9°
CAXCBCCAS120.9°120.1°
CAXCBCCAQ119.5°119.8°
CANCBBCAQ118.9°119.9°
CANCBBNBE120.7°120.0°
CBBCANH7120.3°119.8°
OAECASCBC120.2°120.0°
OAECASOAB118.3°120.0°
CASCBCCAQ119.6°120.1°
CBCCASOAB121.5°120.0°
CBCCAQCBB121.6°119.8°
CBCCAQH2119.2°120.2°
CASOABH1109.5°117.0°
CAQCBBNBE120.4°120.0°
CBBCAQH2119.2°120.1°
CBBNBECAV127.8°126.0°
CBBNBECBD126.5°126.1°
CAVNBECBD105.6°107.9°
NBECAVOAD123.3°125.0°
NBECAVCAU111.8°110.0°
NBECBDCAW104.5°106.2°
NBECBDCBA108.4°110.1°
NBECBDH8110.7°110.1°
OADCAVCAU124.9°125.0°
CAVCAUCAW109.0°109.2°
CAVCAUOAF123.3°125.4°
CAWCBDCBA109.9°110.1°
CBDCAWCAU109.0°106.7°
CBDCAWCAT118.5°126.6°
CAWCBDH8111.7°110.1°
CBDCBACAP127.4°125.2°
CBDCBASAR126.9°125.2°
CBACBDH8111.4°110.1°
CAWCAUOAF127.7°125.4°
CAUCAWCAT132.4°126.7°
CAUOAFH11109.5°114.0°
CAWCATOAC117.1°120.0°
CAWCATCAZ125.2°120.0°
CBACAPCAY113.9°114.9°
CAPCBASAR105.7°109.6°
CBACAPH10123.1°122.6°
CAPCAYBRA122.4°122.5°
CAPCAYCAO118.6°115.0°
CAYCAPH10123.1°122.5°
CBASARCAO97.8°91.0°
OACCATCAZ116.7°120.0°
CATCAZCAL120.9°120.2°
CATCAZCAM121.1°120.1°
BRACAYCAO118.9°122.5°
CAYCAOSAR104.0°109.5°
CAYCAOH9128.0°125.2°
CALCAZCAM117.4°119.7°
CAZCALCAI121.8°119.9°
CAZCALH12119.1°120.1°
CAZCAMCAJ121.2°119.8°
CAZCAMH16119.4°120.1°
CALCAICAH120.1°120.1°
CAICALH12119.1°120.1°
CALCAIH13119.9°119.9°
SARCAOH9128.0°125.2°
CAMCAJCAH120.2°120.1°
CAMCAJH15119.9°119.9°
CAJCAMH16119.4°120.1°
CAICAHCAJ119.0°120.4°
CAHCAIH13119.9°120.0°
CAICAHH14120.5°119.8°
CAJCAHH14120.5°119.8°
CAHCAJH15119.9°120.0°
H3CAAH4109.5°109.4°
H3CAAH5109.5°109.5°
H4CAAH5109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CAACAXCAKCBC179.8°180.0°
CAACAXCAKCAN179.7°180.0°
CAACAXCBCCAS0.1°0.0°
CAACAXCBCCAQ178.7°179.7°
CAXCAAH3H4120.0°120.0°
CAXCAAH3H5120.0°120.0°
CAXCAAH4H5120.0°120.0°
CAACAXCAKH60.3°0.0°
CAXCAKCANH6180.0°180.0°
CAXCAKCANCBB0.1°0.3°
CAKCAXCBCCAS180.0°179.9°
CAKCAXCBCCAQ1.5°0.2°
CAKCAXCAAH389.9°97.1°
CAKCAXCAAH4150.1°22.9°
CAKCAXCAAH530.1°142.9°
CAXCAKCANH7179.9°180.0°
CANCAKCAXCBC0.5°0.0°
CAKCANCBBH7180.0°179.7°
CAKCANCBBCAQ0.6°0.2°
CAKCANCBBNBE179.3°180.0°
CAXCBCCASOAE0.5°6.8°
CAXCBCCASCAQ178.6°179.7°
CAXCBCCASOAB179.7°173.2°
CAXCBCCAQCBB2.1°0.3°
CAXCBCCAQH2177.9°179.8°
CBCCAXCAAH389.9°82.9°
CBCCAXCAAH430.1°157.1°
CBCCAXCAAH5150.1°37.1°
CBCCAXCAKH6179.5°180.0°
CANCBBCAQCBC1.6°0.1°
CANCBBCAQNBE178.7°179.8°
CANCBBNBECAV142.4°180.0°
CANCBBNBECBD41.2°0.3°
CANCBBCAQH2178.4°180.0°
CBBCANCAKH6180.0°179.8°
OAECASCBCOAB179.3°180.0°
OAECASCBCCAQ179.1°173.5°
OAECASOABH10.0°0.0°
CASCBCCAQCBB179.3°180.0°
CBCCASOABH1179.3°180.0°
CASCBCCAQH20.7°0.1°
CAQCBCCASOAB1.7°6.4°
CBCCAQCBBH2180.0°179.9°
CBCCAQCBBNBE179.7°179.7°
CAQCBBNBECAV38.9°0.2°
CAQCBBNBECBD137.5°179.5°
CAQCBBCANH7179.4°179.9°
CBBNBECAVCBD177.0°179.8°
CBBNBECAVOAD2.0°0.1°
CBBNBECAVCAU179.5°180.0°
CBBNBECBDCAW179.8°180.0°
CBBNBECBDCBA62.6°60.8°
NBECBBCAQH20.3°0.2°
NBECBBCANH70.7°0.3°
CBBNBECBDH859.9°60.8°
NBECAVOADCAU178.3°179.9°
CAVNBECBDCAW2.7°0.2°
CAVNBECBDCBA114.4°119.0°
NBECAVCAUCAW1.3°0.1°
NBECAVCAUOAF179.0°180.0°
CAVNBECBDH8123.1°119.4°
CBDNBECAVOAD179.0°179.7°
CBDNBECAVCAU2.5°0.2°
NBECBDCAWCBA116.1°119.2°
NBECBDCAWH8119.7°119.2°
NBECBDCBAH8122.1°121.6°
NBECBDCAWCAU2.0°0.1°
NBECBDCAWCAT174.2°180.0°
NBECBDCBACAP118.9°135.3°
NBECBDCBASAR60.2°45.0°
OADCAVCAUCAW179.7°179.8°
OADCAVCAUOAF0.6°0.1°
CAVCAUCAWCBD0.6°0.0°
CAVCAUCAWOAF179.7°179.9°
CAVCAUCAWCAT174.9°179.9°
CAVCAUOAFH110.2°0.1°
CAWCBDCBAH8124.3°121.6°
CBDCAWCAUCAT175.5°179.9°
CBDCAWCAUOAF179.1°179.9°
CAWCBDCBACAP127.5°107.9°
CAWCBDCBASAR53.4°71.8°
CBDCAWCATOAC0.4°113.6°
CBDCAWCATCAZ167.9°66.4°
CBACBDCAWCAU114.1°119.1°
CBACBDCAWCAT69.7°60.8°
CBDCBACAPSAR179.3°179.7°
CBDCBACAPCAY178.9°179.8°
CBDCBASARCAO179.6°180.0°
CBDCBACAPH101.1°0.0°
CAUCAWCATOAC174.9°66.2°
CAUCAWCATCAZ16.9°113.7°
CAUCAWCBDH8121.8°119.3°
CAWCAUOAFH11179.9°179.8°
OAFCAUCAWCAT5.4°0.0°
CAWCATOACCAZ169.3°180.0°
CAWCATCAZCAL157.8°176.8°
CAWCATCAZCAM31.2°2.9°
CATCAWCBDH854.5°60.8°
CBACAPCAYH10180.0°179.7°
CBACAPCAYBRA177.9°179.8°
CBACAPCAYCAO1.3°0.5°
CAPCBASARCAO0.4°0.3°
CAPCBACBDH83.2°13.7°
CAYCAPCBASAR0.4°0.5°
CAPCAYBRACAO176.5°179.7°
CAPCAYCAOSAR1.5°0.3°
CAPCAYCAOH9178.5°179.7°
CBASARCAOCAY1.0°0.0°
SARCBACBDH8177.7°166.6°
CBASARCAOH9179.0°180.0°
SARCBACAPH10179.6°179.8°
OACCATCAZCAL33.9°3.2°
OACCATCAZCAM137.2°177.1°
CATCAZCALCAM171.4°179.7°
CATCAZCALCAI176.5°180.0°
CATCAZCAMCAJ176.0°179.7°
CATCAZCALH123.5°0.1°
CATCAZCAMH164.0°0.1°
BRACAYCAOSAR178.1°180.0°
BRACAYCAOH91.9°0.0°
BRACAYCAPH102.1°0.0°
CAYCAOSARH9180.0°180.0°
CAOCAYCAPH10178.7°179.7°
CAZCALCAIH12180.0°179.9°
CALCAZCAMCAJ4.6°0.6°
CAZCALCAICAH2.8°0.0°
CAZCALCAIH13177.2°179.9°
CALCAZCAMH16175.4°179.7°
CAMCAZCALCAI5.2°0.3°
CAZCAMCAJH16180.0°179.6°
CAZCAMCAJCAH1.7°0.6°
CAMCAZCALH12174.9°179.7°
CAZCAMCAJH15178.3°179.7°
CALCAICAHH13180.0°180.0°
CALCAICAHCAJ0.4°0.0°
CALCAICAHH14179.6°180.0°
CAMCAJCAHCAI0.9°0.3°
CAMCAJCAHH15180.0°179.6°
CAMCAJCAHH14179.1°179.6°
CAICAHCAJH14180.0°180.0°
CAHCAICALH12177.3°180.0°
CAICAHCAJH15179.1°179.9°
CAJCAHCAIH13179.6°179.9°
CAHCAJCAMH16178.3°179.7°
H3CAAH4H5120.0°120.0°
H6CAKCANH70.1°0.1°
H12CALCAIH132.7°0.0°
H13CAICAHH140.4°0.1°
H14CAHCAJH150.9°0.0°
H15CAJCAMH161.7°0.1°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon