Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1DI

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.47Å1.48Å
N1HN1sing1.01Å1.00Å
N1HN1Asing1.01Å1.00Å
C2C3sing1.53Å1.58Å
C2C12sing1.51Å1.55Å
C2H2sing1.09Å1.10Å
C3C4sing1.51Å1.55Å
C3H3sing1.09Å1.10Å
C3H3Asing1.09Å1.10Å
C4C5doub1.38Å1.46ÅAromatic
C4C10sing1.38Å1.47ÅAromatic
C5C6sing1.38Å1.44ÅAromatic
C5H5sing1.08Å1.08Å
C6C7doub1.38Å1.44ÅAromatic
C6H6sing1.08Å1.08Å
C7CL8sing1.74Å1.74Å
C7C9sing1.38Å1.44ÅAromatic
C9C10doub1.38Å1.44ÅAromatic
C9H9sing1.08Å1.08Å
C10CL11sing1.74Å1.76Å
C12O13doub1.21Å1.23Å
C12N14sing1.35Å1.41Å
N14C15sing1.47Å1.49Å
N14C22sing1.47Å1.49Å
C15C16sing1.51Å1.52Å
C15H15sing1.09Å1.10Å
C16C17sing1.38Å1.44ÅAromatic
C16C21doub1.38Å1.43ÅAromatic
C17C18doub1.38Å1.45ÅAromatic
C17H17sing1.08Å1.08Å
C18C19sing1.38Å1.45ÅAromatic
C18H18sing1.08Å1.08Å
C19C20doub1.38Å1.45ÅAromatic
C19H19sing1.08Å1.08Å
C20C21sing1.39Å1.45ÅAromatic
C20H20sing1.08Å1.08Å
C21C22sing1.51Å1.52Å
C22H22sing1.09Å1.10Å
C15H151sing1.09Å1.10Å
C22H16sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1HN1109.5°111.1°
C2N1HN1A109.5°111.0°
N1C2C3111.9°109.5°
N1C2C12113.7°109.4°
N1C2H2104.7°109.5°
HN1N1HN1A109.4°111.0°
C3C2C12109.3°109.5°
C3C2H2109.5°109.5°
C2C3C4115.3°109.5°
C2C3H3107.5°109.5°
C2C3H3A107.6°109.5°
C12C2H2107.5°109.5°
C2C12O13113.8°120.1°
C2C12N14126.3°120.0°
C4C3H3107.6°109.5°
C4C3H3A107.6°109.5°
C3C4C5118.4°120.0°
C3C4C10122.7°120.0°
H3C3H3A111.3°109.4°
C5C4C10118.9°120.0°
C4C5C6120.9°120.0°
C4C5H5119.6°120.0°
C4C10C9119.3°120.0°
C4C10CL11123.3°120.0°
C6C5H5119.5°120.0°
C5C6C7119.7°120.0°
C5C6H6120.2°120.0°
C7C6H6120.2°120.0°
C6C7CL8119.8°120.0°
C6C7C9120.4°120.0°
CL8C7C9119.7°120.0°
C7C9C10120.8°120.0°
C7C9H9119.6°120.0°
C10C9H9119.6°120.0°
C9C10CL11117.4°120.0°
O13C12N14119.9°119.9°
C12N14C15120.8°126.6°
C12N14C22122.6°126.5°
C15N14C22116.6°106.9°
N14C15C16100.3°107.7°
N14C15H15112.7°109.8°
N14C15H151112.7°109.7°
N14C22C21100.1°107.7°
N14C22H22112.7°109.8°
N14C22H16112.8°109.8°
C16C15H15112.6°109.9°
C15C16C17128.0°131.2°
C15C16C21111.2°108.8°
C16C15H151112.7°109.8°
H15C15H151106.1°109.8°
C17C16C21120.8°119.9°
C16C17C18119.0°120.1°
C16C17H17120.5°119.9°
C16C21C20120.8°119.9°
C16C21C22111.3°108.9°
C18C17H17120.5°120.0°
C17C18C19120.4°120.0°
C17C18H18119.8°120.1°
C19C18H18119.8°119.9°
C18C19C20120.2°119.9°
C18C19H19119.9°120.0°
C20C19H19119.9°120.0°
C19C20C21118.8°120.1°
C19C20H20120.6°120.0°
C21C20H20120.6°119.9°
C20C21C22127.9°131.2°
C21C22H22112.8°110.0°
C21C22H16112.7°109.7°
H22C22H16106.0°109.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1HN1HN1A120.0°124.0°
N1C2C3C12126.9°119.9°
N1C2C3H2115.6°120.0°
N1C2C12H2115.4°119.9°
N1C2C3C455.1°65.0°
N1C2C3H364.9°175.0°
N1C2C3H3A175.1°55.0°
N1C2C12O1329.0°20.1°
N1C2C12N14151.8°160.0°
HN1N1C2C3180.0°60.0°
HN1N1C2C1255.5°60.0°
HN1N1C2H261.5°180.0°
HN1AN1C2C360.0°176.0°
HN1AN1C2C12175.5°64.0°
HN1AN1C2H258.5°55.9°
C3C2C12H2118.8°120.1°
C2C3C4H3120.0°120.0°
C2C3C4H3A120.0°120.1°
C2C3H3H3A117.6°120.0°
C2C3C4C591.3°100.0°
C2C3C4C1088.6°80.3°
C3C2C12O1396.9°99.9°
C3C2C12N1482.3°80.0°
C12C2C3C471.8°175.0°
C12C2C3H3168.2°55.0°
C12C2C3H3A48.2°65.0°
C2C12O13N14179.3°179.9°
C2C12N14C151.5°180.0°
C2C12N14C22176.0°0.3°
H2C2C3C4170.6°55.0°
H2C2C3H350.6°65.0°
H2C2C3H3A69.4°175.0°
H2C2C12O13144.3°140.0°
H2C2C12N1436.5°40.1°
C4C3H3H3A117.6°120.0°
C3C4C5C10179.9°179.7°
C3C4C5C6179.7°180.0°
C3C4C5H50.3°0.0°
C3C4C10C9179.7°179.7°
C3C4C10CL110.2°0.1°
H3C3C4C5148.7°20.0°
H3C3C4C1031.4°159.7°
H3AC3C4C528.7°140.0°
H3AC3C4C10151.4°39.7°
C4C5C6H5180.0°180.0°
C4C5C6C70.0°0.0°
C4C5C6H6180.0°180.0°
C5C4C10C90.2°0.6°
C5C4C10CL11179.9°179.8°
C10C4C5C60.2°0.3°
C10C4C5H5179.7°179.7°
C4C10C9C70.0°0.6°
C4C10C9CL11179.9°179.7°
C4C10C9H9179.9°179.7°
C5C6C7H6180.0°180.0°
C5C6C7CL8179.9°180.0°
C5C6C7C90.2°0.0°
H5C5C6C7179.9°180.0°
H5C5C6H60.1°0.0°
C6C7CL8C9179.9°180.0°
C6C7C9C100.2°0.3°
C6C7C9H9179.8°180.0°
H6C6C7CL80.1°0.1°
H6C6C7C9179.8°180.0°
CL8C7C9C10179.9°179.7°
CL8C7C9H90.1°0.0°
C7C9C10H9180.0°179.7°
C7C9C10CL11179.9°179.7°
H9C9C10CL110.1°0.0°
O13C12N14C15179.4°0.1°
O13C12N14C223.2°179.6°
C12N14C15C22177.6°179.8°
C12N14C15C16174.5°180.0°
C12N14C15H1565.5°60.3°
C12N14C22C21174.5°179.8°
C12N14C22H2254.4°60.5°
C12N14C15H15154.5°60.5°
C12N14C22H1665.5°60.5°
N14C15C16H15120.0°119.6°
N14C15C16H151120.0°119.5°
N14C15H15H151123.7°120.8°
N14C15C16C17175.6°180.0°
N14C15C16C214.3°0.0°
C15N14C22C218.0°0.4°
C15N14C22H22128.0°119.3°
C15N14C22H16112.0°119.8°
C22N14C15C167.9°0.3°
C22N14C15H15112.1°119.9°
N14C22C21C164.6°0.5°
N14C22C21C20175.4°179.9°
N14C22C21H22120.0°119.7°
N14C22C21H16120.0°119.4°
N14C22H22H16123.8°120.8°
C22N14C15H151127.9°119.3°
C16C15H15H151123.7°120.9°
C15C16C17C21179.9°180.0°
C15C16C17C18179.9°180.0°
C15C16C17H170.1°0.0°
C15C16C21C20179.9°180.0°
C15C16C21C220.2°0.3°
H15C15C16C1764.4°60.4°
H15C15C16C21115.7°119.6°
C16C17C18H17180.0°180.0°
C16C17C18C190.0°0.0°
C16C17C18H18180.0°179.9°
C17C16C21C200.0°0.0°
C17C16C21C22179.9°179.7°
C17C16C15H15155.5°60.5°
C21C16C17C180.0°0.0°
C21C16C17H17180.0°180.0°
C16C21C20C190.0°0.0°
C16C21C20C22179.9°179.6°
C16C21C20H20180.0°180.0°
C16C21C22H22124.6°119.2°
C21C16C15H151124.4°119.5°
C16C21C22H16115.4°119.8°
C17C18C19H18180.0°179.8°
C17C18C19C200.1°0.1°
C17C18C19H19179.9°180.0°
H17C17C18C19179.9°179.9°
H17C17C18H180.1°0.1°
C18C19C20H19180.0°179.9°
C18C19C20C210.0°0.1°
C18C19C20H20180.0°179.9°
H18C18C19C20179.9°179.9°
H18C18C19H190.0°0.1°
C19C20C21H20180.0°180.0°
C19C20C21C22179.9°179.7°
H19C19C20C21180.0°180.0°
H19C19C20H200.0°0.0°
C20C21C22H2255.5°60.5°
C20C21C22H1664.5°60.5°
H20C20C21C220.1°0.3°
C21C22H22H16123.8°120.8°

248636

PDB entries from 2026-02-04

PDB statisticsPDBj update infoContact PDBjnumon