1DA
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| O5' | HO5' | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C5' | H5'1 | sing | 1.09Å | 1.12Å | |
| C5' | H5'2 | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.43Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N9 | sing | 1.46Å | 1.41Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| N9 | C8 | sing | 1.36Å | 1.35Å | Aromatic |
| N9 | C4 | sing | 1.38Å | 1.34Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.34Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.10Å | |
| N7 | C5 | sing | 1.36Å | 1.36Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.37Å | Aromatic |
| C5 | C4 | doub | 1.40Å | 1.35Å | Aromatic |
| C6 | N6 | sing | 1.39Å | 1.34Å | |
| C6 | C1 | doub | 1.39Å | 1.38Å | Aromatic |
| N6 | HN61 | sing | 0.97Å | 1.02Å | |
| N6 | HN62 | sing | 0.97Å | 1.02Å | |
| C1 | C2 | sing | 1.38Å | 1.39Å | Aromatic |
| C1 | H1 | sing | 1.08Å | 1.10Å | |
| C2 | N3 | doub | 1.32Å | 1.32Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.10Å | |
| N3 | C4 | sing | 1.33Å | 1.34Å | Aromatic |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C5' | O5' | HO5' | 111.9° | 106.9° |
| O5' | C5' | C4' | 111.9° | 109.5° |
| O5' | C5' | H5'1 | 111.3° | 109.5° |
| O5' | C5' | H5'2 | 111.3° | 109.5° |
| C4' | C5' | H5'1 | 111.3° | 109.5° |
| C4' | C5' | H5'2 | 111.3° | 109.4° |
| C5' | C4' | O4' | 110.1° | 110.4° |
| C5' | C4' | C3' | 113.5° | 110.5° |
| C5' | C4' | H4' | 105.1° | 110.3° |
| H5'1 | C5' | H5'2 | 99.1° | 109.5° |
| O4' | C4' | C3' | 105.4° | 104.8° |
| O4' | C4' | H4' | 113.1° | 110.4° |
| C4' | O4' | C1' | 109.3° | 105.3° |
| C3' | C4' | H4' | 109.8° | 110.4° |
| C4' | C3' | O3' | 113.7° | 110.5° |
| C4' | C3' | C2' | 103.2° | 104.1° |
| C4' | C3' | H3' | 111.8° | 110.5° |
| O4' | C1' | C2' | 107.6° | 104.9° |
| O4' | C1' | N9 | 114.5° | 110.4° |
| O4' | C1' | H1' | 107.6° | 110.4° |
| O3' | C3' | C2' | 112.1° | 110.6° |
| O3' | C3' | H3' | 102.9° | 110.4° |
| C3' | O3' | HO3' | 113.7° | 106.8° |
| C2' | C3' | H3' | 113.5° | 110.6° |
| C3' | C2' | O2' | 104.3° | 110.5° |
| C3' | C2' | C1' | 104.8° | 104.0° |
| C3' | C2' | H2' | 113.9° | 110.5° |
| O2' | C2' | C1' | 104.2° | 110.8° |
| O2' | C2' | H2' | 114.4° | 110.5° |
| C2' | O2' | HO2' | 104.3° | 106.8° |
| C1' | C2' | H2' | 114.0° | 110.4° |
| C2' | C1' | N9 | 110.3° | 110.4° |
| C2' | C1' | H1' | 112.0° | 110.3° |
| N9 | C1' | H1' | 104.8° | 110.3° |
| C1' | N9 | C8 | 127.6° | 126.3° |
| C1' | N9 | C4 | 126.0° | 126.4° |
| C8 | N9 | C4 | 106.2° | 107.3° |
| N9 | C8 | N7 | 111.4° | 110.0° |
| N9 | C8 | H8 | 124.5° | 125.0° |
| N9 | C4 | C5 | 108.2° | 106.0° |
| N9 | C4 | N3 | 128.3° | 133.6° |
| N7 | C8 | H8 | 124.2° | 125.1° |
| C8 | N7 | C5 | 104.8° | 109.5° |
| N7 | C5 | C6 | 132.0° | 133.9° |
| N7 | C5 | C4 | 109.1° | 107.2° |
| C6 | C5 | C4 | 118.9° | 119.0° |
| C5 | C6 | N6 | 121.8° | 121.0° |
| C5 | C6 | C1 | 118.0° | 118.0° |
| C5 | C4 | N3 | 123.4° | 120.4° |
| N6 | C6 | C1 | 120.2° | 121.0° |
| C6 | N6 | HN61 | 121.8° | 120.0° |
| C6 | N6 | HN62 | 107.8° | 120.0° |
| C6 | C1 | C2 | 120.8° | 119.4° |
| C6 | C1 | H1 | 119.1° | 120.2° |
| HN61 | N6 | HN62 | 107.8° | 120.0° |
| C2 | C1 | H1 | 120.1° | 120.3° |
| C1 | C2 | N3 | 119.8° | 121.4° |
| C1 | C2 | H2 | 122.5° | 119.2° |
| N3 | C2 | H2 | 117.7° | 119.3° |
| C2 | N3 | C4 | 119.1° | 121.7° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | C5' | C4' | H5'1 | 125.2° | 120.0° |
| O5' | C5' | C4' | H5'2 | 125.2° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 117.2° | 120.0° |
| O5' | C5' | C4' | O4' | 63.9° | 61.4° |
| O5' | C5' | C4' | C3' | 54.0° | 176.9° |
| O5' | C5' | C4' | H4' | 173.9° | 60.8° |
| HO5' | O5' | C5' | C4' | 180.0° | 180.0° |
| HO5' | O5' | C5' | H5'1 | 54.8° | 60.0° |
| HO5' | O5' | C5' | H5'2 | 54.8° | 60.1° |
| C4' | C5' | H5'1 | H5'2 | 117.2° | 120.0° |
| C5' | C4' | O4' | C3' | 122.8° | 119.0° |
| C5' | C4' | O4' | H4' | 117.3° | 122.2° |
| C5' | C4' | C3' | H4' | 117.2° | 122.2° |
| C5' | C4' | O4' | C1' | 150.2° | 159.5° |
| C5' | C4' | C3' | O3' | 86.5° | 98.3° |
| C5' | C4' | C3' | C2' | 151.8° | 143.0° |
| C5' | C4' | C3' | H3' | 29.5° | 24.2° |
| H5'1 | C5' | C4' | O4' | 170.8° | 178.6° |
| H5'1 | C5' | C4' | C3' | 71.2° | 63.1° |
| H5'1 | C5' | C4' | H4' | 48.7° | 59.2° |
| H5'2 | C5' | C4' | O4' | 61.3° | 58.5° |
| H5'2 | C5' | C4' | C3' | 179.2° | 56.9° |
| H5'2 | C5' | C4' | H4' | 60.8° | 179.2° |
| O4' | C4' | C3' | H4' | 122.2° | 118.8° |
| O4' | C4' | C3' | O3' | 152.9° | 142.8° |
| O4' | C4' | C3' | C2' | 31.2° | 24.1° |
| O4' | C4' | C3' | H3' | 91.1° | 94.7° |
| C4' | O4' | C1' | C2' | 12.3° | 40.4° |
| C4' | O4' | C1' | N9 | 135.3° | 159.4° |
| C4' | O4' | C1' | H1' | 108.7° | 78.4° |
| C3' | C4' | O4' | C1' | 27.4° | 40.5° |
| C4' | C3' | O3' | C2' | 116.6° | 114.7° |
| C4' | C3' | O3' | H3' | 121.1° | 122.6° |
| C4' | C3' | C2' | H3' | 121.2° | 118.7° |
| C4' | C3' | O3' | HO3' | 180.0° | 61.4° |
| C4' | C3' | C2' | O2' | 85.9° | 118.8° |
| C4' | C3' | C2' | C1' | 23.4° | 0.2° |
| C4' | C3' | C2' | H2' | 148.7° | 118.6° |
| H4' | C4' | O4' | C1' | 92.5° | 78.3° |
| H4' | C4' | C3' | O3' | 30.7° | 23.9° |
| H4' | C4' | C3' | C2' | 90.9° | 94.8° |
| H4' | C4' | C3' | H3' | 146.7° | 146.5° |
| O4' | C1' | C2' | C3' | 7.9° | 23.8° |
| O4' | C1' | C2' | O2' | 101.4° | 142.6° |
| O4' | C1' | C2' | N9 | 125.5° | 119.0° |
| O4' | C1' | C2' | H1' | 118.1° | 118.9° |
| O4' | C1' | C2' | H2' | 133.2° | 94.7° |
| O4' | C1' | N9 | H1' | 117.7° | 122.2° |
| O4' | C1' | N9 | C8 | 78.1° | 27.0° |
| O4' | C1' | N9 | C4 | 107.3° | 153.0° |
| O3' | C3' | C2' | H3' | 116.0° | 122.6° |
| O3' | C3' | C2' | O2' | 36.9° | 0.1° |
| O3' | C3' | C2' | C1' | 146.2° | 118.9° |
| O3' | C3' | C2' | H2' | 88.5° | 122.7° |
| C2' | C3' | O3' | HO3' | 63.4° | 176.1° |
| C3' | C2' | O2' | C1' | 109.6° | 114.7° |
| C3' | C2' | O2' | H2' | 125.2° | 122.6° |
| C3' | C2' | C1' | H2' | 125.3° | 118.5° |
| C3' | C2' | O2' | HO2' | 179.9° | 61.5° |
| C3' | C2' | C1' | N9 | 117.6° | 142.8° |
| C3' | C2' | C1' | H1' | 126.1° | 95.1° |
| H3' | C3' | O3' | HO3' | 58.8° | 61.2° |
| H3' | C3' | C2' | O2' | 152.9° | 122.5° |
| H3' | C3' | C2' | C1' | 97.8° | 118.5° |
| H3' | C3' | C2' | H2' | 27.5° | 0.1° |
| O2' | C2' | C1' | H2' | 125.4° | 122.7° |
| O2' | C2' | C1' | N9 | 133.1° | 98.5° |
| O2' | C2' | C1' | H1' | 16.8° | 23.7° |
| C1' | C2' | O2' | HO2' | 70.4° | 176.2° |
| C2' | C1' | N9 | H1' | 120.8° | 122.2° |
| C2' | C1' | N9 | C8 | 43.5° | 88.5° |
| C2' | C1' | N9 | C4 | 131.1° | 91.5° |
| H2' | C2' | O2' | HO2' | 54.8° | 61.2° |
| H2' | C2' | C1' | N9 | 7.7° | 24.2° |
| H2' | C2' | C1' | H1' | 108.7° | 146.4° |
| C1' | N9 | C8 | C4 | 175.5° | 180.0° |
| C1' | N9 | C8 | N7 | 176.7° | 180.0° |
| C1' | N9 | C8 | H8 | 3.3° | 0.1° |
| C1' | N9 | C4 | C5 | 173.4° | 179.8° |
| C1' | N9 | C4 | N3 | 4.7° | 0.0° |
| H1' | C1' | N9 | C8 | 164.2° | 149.3° |
| H1' | C1' | N9 | C4 | 10.4° | 30.7° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C8 | N7 | C5 | 4.0° | 0.2° |
| C8 | N9 | C4 | C5 | 2.2° | 0.2° |
| C8 | N9 | C4 | N3 | 179.7° | 180.0° |
| C4 | N9 | C8 | N7 | 1.2° | 0.0° |
| C4 | N9 | C8 | H8 | 178.8° | 180.0° |
| N9 | C4 | C5 | N7 | 4.7° | 0.4° |
| N9 | C4 | C5 | C6 | 177.8° | 179.7° |
| N9 | C4 | C5 | N3 | 178.2° | 179.8° |
| N9 | C4 | N3 | C2 | 177.5° | 179.9° |
| C8 | N7 | C5 | C6 | 177.7° | 179.5° |
| C8 | N7 | C5 | C4 | 5.3° | 0.4° |
| H8 | C8 | N7 | C5 | 176.0° | 179.7° |
| N7 | C5 | C6 | C4 | 176.8° | 179.0° |
| N7 | C5 | C6 | N6 | 3.7° | 0.7° |
| N7 | C5 | C6 | C1 | 176.5° | 179.5° |
| N7 | C5 | C4 | N3 | 177.0° | 179.8° |
| C5 | C6 | N6 | C1 | 179.8° | 179.7° |
| C5 | C6 | N6 | HN61 | 180.0° | 179.8° |
| C5 | C6 | N6 | HN62 | 54.7° | 0.6° |
| C5 | C6 | C1 | C2 | 0.0° | 0.3° |
| C5 | C6 | C1 | H1 | 180.0° | 179.8° |
| C6 | C5 | C4 | N3 | 0.4° | 0.5° |
| C4 | C5 | C6 | N6 | 179.5° | 179.8° |
| C4 | C5 | C6 | C1 | 0.2° | 0.5° |
| C5 | C4 | N3 | C2 | 0.4° | 0.3° |
| C6 | N6 | HN61 | HN62 | 125.3° | 179.6° |
| N6 | C6 | C1 | C2 | 179.7° | 180.0° |
| N6 | C6 | C1 | H1 | 0.2° | 0.0° |
| C1 | C6 | N6 | HN61 | 0.2° | 0.1° |
| C1 | C6 | N6 | HN62 | 125.0° | 179.7° |
| C6 | C1 | C2 | H1 | 180.0° | 180.0° |
| C6 | C1 | C2 | N3 | 0.0° | 0.0° |
| C6 | C1 | C2 | H2 | 180.0° | 180.0° |
| C1 | C2 | N3 | H2 | 180.0° | 180.0° |
| C1 | C2 | N3 | C4 | 0.2° | 0.0° |
| H1 | C1 | C2 | N3 | 180.0° | 180.0° |
| H1 | C1 | C2 | H2 | 0.0° | 0.0° |
| H2 | C2 | N3 | C4 | 179.8° | 180.0° |
