1CS
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C5' | O4' | sing | 1.43Å | 1.42Å | |
| C5' | H5'1 | sing | 1.09Å | 1.12Å | |
| C5' | H5'2 | sing | 1.09Å | 1.11Å | |
| C5' | H5'3 | sing | 1.09Å | 1.11Å | |
| O4' | C4' | sing | 1.35Å | 1.45Å | |
| C4' | N5' | doub | 1.33Å | 1.42Å | Aromatic |
| C4' | N3' | sing | 1.33Å | 1.38Å | Aromatic |
| N5' | C6' | sing | 1.32Å | 1.44Å | Aromatic |
| C6' | C7' | sing | 1.51Å | 1.43Å | |
| C6' | N1' | doub | 1.32Å | 1.42Å | Aromatic |
| C7' | H7'1 | sing | 1.09Å | 1.11Å | |
| C7' | H7'2 | sing | 1.09Å | 1.12Å | |
| C7' | H7'3 | sing | 1.09Å | 1.12Å | |
| N1' | C2' | sing | 1.33Å | 1.44Å | Aromatic |
| C2' | N10 | sing | 1.38Å | 1.35Å | |
| C2' | N3' | doub | 1.33Å | 1.41Å | Aromatic |
| N10 | C9 | sing | 1.35Å | 1.35Å | |
| N10 | H10 | sing | 0.97Å | 1.02Å | |
| C9 | O9 | doub | 1.22Å | 1.25Å | |
| C9 | N8 | sing | 1.35Å | 1.35Å | |
| N8 | S7 | sing | 1.66Å | 1.66Å | |
| N8 | HN8 | sing | 0.97Å | 1.02Å | |
| S7 | O7A | doub | 1.42Å | 1.44Å | |
| S7 | O7B | doub | 1.42Å | 1.45Å | |
| S7 | C2 | sing | 1.76Å | 1.76Å | |
| C2 | C3 | doub | 1.38Å | 1.44Å | Aromatic |
| C2 | C1 | sing | 1.38Å | 1.47Å | Aromatic |
| C3 | C4 | sing | 1.38Å | 1.47Å | Aromatic |
| C3 | H3 | sing | 1.08Å | 1.10Å | |
| C4 | C5 | doub | 1.38Å | 1.48Å | Aromatic |
| C4 | H4 | sing | 1.08Å | 1.10Å | |
| C5 | C6 | sing | 1.38Å | 1.42Å | Aromatic |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C6 | C1 | doub | 1.38Å | 1.44Å | Aromatic |
| C6 | H6 | sing | 1.08Å | 1.10Å | |
| C1 | CL11 | sing | 1.74Å | 1.70Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O4' | C5' | H5'1 | 108.3° | 109.5° |
| O4' | C5' | H5'2 | 120.4° | 109.5° |
| O4' | C5' | H5'3 | 108.3° | 109.5° |
| C5' | O4' | C4' | 120.4° | 106.8° |
| H5'1 | C5' | H5'2 | 108.3° | 109.5° |
| H5'1 | C5' | H5'3 | 101.7° | 109.5° |
| H5'2 | C5' | H5'3 | 108.3° | 109.5° |
| O4' | C4' | N5' | 118.5° | 120.1° |
| O4' | C4' | N3' | 120.6° | 120.0° |
| N5' | C4' | N3' | 120.9° | 119.9° |
| C4' | N5' | C6' | 117.7° | 120.1° |
| C4' | N3' | C2' | 122.3° | 119.8° |
| N5' | C6' | C7' | 117.6° | 119.9° |
| N5' | C6' | N1' | 121.8° | 120.2° |
| C7' | C6' | N1' | 120.6° | 119.9° |
| C6' | C7' | H7'1 | 109.2° | 109.5° |
| C6' | C7' | H7'2 | 117.6° | 109.5° |
| C6' | C7' | H7'3 | 109.3° | 109.5° |
| C6' | N1' | C2' | 118.1° | 120.1° |
| H7'1 | C7' | H7'2 | 109.3° | 109.4° |
| H7'1 | C7' | H7'3 | 100.8° | 109.5° |
| H7'2 | C7' | H7'3 | 109.3° | 109.5° |
| N1' | C2' | N10 | 119.8° | 120.1° |
| N1' | C2' | N3' | 119.2° | 119.9° |
| N10 | C2' | N3' | 121.1° | 120.0° |
| C2' | N10 | C9 | 125.1° | 120.0° |
| C2' | N10 | H10 | 106.7° | 120.0° |
| C9 | N10 | H10 | 106.7° | 120.0° |
| N10 | C9 | O9 | 128.9° | 120.0° |
| N10 | C9 | N8 | 107.6° | 120.0° |
| O9 | C9 | N8 | 123.5° | 120.0° |
| C9 | N8 | S7 | 124.3° | 120.0° |
| C9 | N8 | HN8 | 106.8° | 120.0° |
| S7 | N8 | HN8 | 128.9° | 120.0° |
| N8 | S7 | O7A | 123.1° | 105.8° |
| N8 | S7 | O7B | 84.9° | 105.7° |
| N8 | S7 | C2 | 107.4° | 107.4° |
| O7A | S7 | O7B | 119.4° | 125.4° |
| O7A | S7 | C2 | 118.3° | 105.7° |
| O7B | S7 | C2 | 96.5° | 105.8° |
| S7 | C2 | C3 | 109.8° | 120.0° |
| S7 | C2 | C1 | 131.1° | 120.0° |
| C3 | C2 | C1 | 119.1° | 120.0° |
| C2 | C3 | C4 | 120.2° | 120.0° |
| C2 | C3 | H3 | 118.8° | 120.0° |
| C2 | C1 | C6 | 120.3° | 120.0° |
| C2 | C1 | CL11 | 121.7° | 120.0° |
| C4 | C3 | H3 | 120.9° | 120.0° |
| C3 | C4 | C5 | 119.4° | 120.0° |
| C3 | C4 | H4 | 120.3° | 120.0° |
| C5 | C4 | H4 | 120.3° | 120.0° |
| C4 | C5 | C6 | 119.6° | 120.0° |
| C4 | C5 | H5 | 122.3° | 120.0° |
| C6 | C5 | H5 | 118.2° | 120.0° |
| C5 | C6 | C1 | 121.5° | 119.9° |
| C5 | C6 | H6 | 118.3° | 120.0° |
| C1 | C6 | H6 | 120.3° | 120.0° |
| C6 | C1 | CL11 | 117.9° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O4' | C5' | H5'1 | H5'2 | 132.1° | 120.0° |
| O4' | C5' | H5'1 | H5'3 | 114.0° | 120.0° |
| O4' | C5' | H5'2 | H5'3 | 125.3° | 120.0° |
| C5' | O4' | C4' | N5' | 0.1° | 179.9° |
| C5' | O4' | C4' | N3' | 179.7° | 0.3° |
| H5'1 | C5' | H5'2 | H5'3 | 109.5° | 120.0° |
| H5'1 | C5' | O4' | C4' | 54.7° | 180.0° |
| H5'2 | C5' | O4' | C4' | 180.0° | 60.0° |
| H5'3 | C5' | O4' | C4' | 54.7° | 60.0° |
| O4' | C4' | N5' | N3' | 179.8° | 179.6° |
| O4' | C4' | N5' | C6' | 179.7° | 180.0° |
| O4' | C4' | N3' | C2' | 179.9° | 179.8° |
| C4' | N5' | C6' | C7' | 179.9° | 180.0° |
| C4' | N5' | C6' | N1' | 0.2° | 0.0° |
| N5' | C4' | N3' | C2' | 0.1° | 0.6° |
| N3' | C4' | N5' | C6' | 0.1° | 0.3° |
| C4' | N3' | C2' | N1' | 0.1° | 0.5° |
| C4' | N3' | C2' | N10 | 179.8° | 179.6° |
| N5' | C6' | C7' | N1' | 179.7° | 180.0° |
| N5' | C6' | C7' | H7'1 | 54.7° | 90.1° |
| N5' | C6' | C7' | H7'2 | 180.0° | 150.0° |
| N5' | C6' | C7' | H7'3 | 54.7° | 30.0° |
| N5' | C6' | N1' | C2' | 0.2° | 0.0° |
| C6' | C7' | H7'1 | H7'2 | 129.9° | 120.0° |
| C6' | C7' | H7'1 | H7'3 | 115.0° | 120.0° |
| C6' | C7' | H7'2 | H7'3 | 125.3° | 120.0° |
| C7' | C6' | N1' | C2' | 179.8° | 180.0° |
| N1' | C6' | C7' | H7'1 | 125.6° | 90.0° |
| N1' | C6' | C7' | H7'2 | 0.3° | 30.0° |
| N1' | C6' | C7' | H7'3 | 125.0° | 150.0° |
| C6' | N1' | C2' | N10 | 179.9° | 179.9° |
| C6' | N1' | C2' | N3' | 0.0° | 0.2° |
| H7'1 | C7' | H7'2 | H7'3 | 109.5° | 120.0° |
| N1' | C2' | N10 | N3' | 179.9° | 179.8° |
| N1' | C2' | N10 | C9 | 179.7° | 180.0° |
| N1' | C2' | N10 | H10 | 55.0° | 0.1° |
| C2' | N10 | C9 | H10 | 125.2° | 179.9° |
| C2' | N10 | C9 | O9 | 0.2° | 0.1° |
| C2' | N10 | C9 | N8 | 179.2° | 179.9° |
| N3' | C2' | N10 | C9 | 0.2° | 0.2° |
| N3' | C2' | N10 | H10 | 125.0° | 179.7° |
| N10 | C9 | O9 | N8 | 178.8° | 180.0° |
| N10 | C9 | N8 | S7 | 178.9° | 174.8° |
| N10 | C9 | N8 | HN8 | 1.0° | 5.2° |
| H10 | N10 | C9 | O9 | 125.4° | 180.0° |
| H10 | N10 | C9 | N8 | 55.6° | 0.0° |
| O9 | C9 | N8 | S7 | 0.1° | 5.2° |
| O9 | C9 | N8 | HN8 | 179.9° | 174.8° |
| C9 | N8 | S7 | HN8 | 180.0° | 179.9° |
| C9 | N8 | S7 | O7A | 82.3° | 177.4° |
| C9 | N8 | S7 | O7B | 155.7° | 47.8° |
| C9 | N8 | S7 | C2 | 60.5° | 64.8° |
| N8 | S7 | O7A | O7B | 104.1° | 123.1° |
| N8 | S7 | O7A | C2 | 139.1° | 113.7° |
| N8 | S7 | O7B | C2 | 107.0° | 113.8° |
| N8 | S7 | C2 | C3 | 145.3° | 116.0° |
| N8 | S7 | C2 | C1 | 34.6° | 63.8° |
| HN8 | N8 | S7 | O7A | 97.7° | 2.5° |
| HN8 | N8 | S7 | O7B | 24.2° | 132.3° |
| HN8 | N8 | S7 | C2 | 119.4° | 115.1° |
| O7A | S7 | O7B | C2 | 127.6° | 123.1° |
| O7A | S7 | C2 | C3 | 0.3° | 131.4° |
| O7A | S7 | C2 | C1 | 179.6° | 48.8° |
| O7B | S7 | C2 | C3 | 128.1° | 3.4° |
| O7B | S7 | C2 | C1 | 52.0° | 176.4° |
| S7 | C2 | C3 | C1 | 179.9° | 179.7° |
| S7 | C2 | C3 | C4 | 179.9° | 180.0° |
| S7 | C2 | C3 | H3 | 0.1° | 0.0° |
| S7 | C2 | C1 | C6 | 179.8° | 179.7° |
| S7 | C2 | C1 | CL11 | 0.1° | 0.2° |
| C2 | C3 | C4 | H3 | 180.0° | 180.0° |
| C2 | C3 | C4 | C5 | 0.1° | 0.0° |
| C2 | C3 | C4 | H4 | 179.9° | 180.0° |
| C3 | C2 | C1 | C6 | 0.2° | 0.6° |
| C3 | C2 | C1 | CL11 | 179.9° | 179.9° |
| C1 | C2 | C3 | C4 | 0.0° | 0.3° |
| C1 | C2 | C3 | H3 | 180.0° | 179.7° |
| C2 | C1 | C6 | C5 | 0.1° | 0.6° |
| C2 | C1 | C6 | CL11 | 179.9° | 179.5° |
| C2 | C1 | C6 | H6 | 179.8° | 179.7° |
| C3 | C4 | C5 | H4 | 180.0° | 180.0° |
| C3 | C4 | C5 | C6 | 0.2° | 0.0° |
| C3 | C4 | C5 | H5 | 179.8° | 180.0° |
| H3 | C3 | C4 | C5 | 179.9° | 180.0° |
| H3 | C3 | C4 | H4 | 0.1° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | C1 | 0.0° | 0.3° |
| C4 | C5 | C6 | H6 | 180.0° | 180.0° |
| H4 | C4 | C5 | C6 | 179.9° | 180.0° |
| H4 | C4 | C5 | H5 | 0.1° | 0.1° |
| C5 | C6 | C1 | H6 | 180.0° | 179.7° |
| C5 | C6 | C1 | CL11 | 179.9° | 180.0° |
| H5 | C5 | C6 | C1 | 180.0° | 179.8° |
| H5 | C5 | C6 | H6 | 0.0° | 0.0° |
| H6 | C6 | C1 | CL11 | 0.1° | 0.2° |
