18Q
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP2 | P | doub | 1.48Å | 1.51Å | |
| O5' | P | sing | 1.61Å | 1.61Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| P | OP1 | sing | 1.61Å | 1.51Å | |
| C1' | N1 | sing | 1.46Å | 1.47Å | |
| N1 | C2 | sing | 1.34Å | 1.42Å | |
| N1 | C6 | sing | 1.36Å | 1.34Å | |
| O2 | C2 | doub | 1.21Å | 1.26Å | |
| C2 | N3 | sing | 1.34Å | 1.34Å | |
| N3 | C4 | sing | 1.35Å | 1.34Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C5 | C4 | sing | 1.47Å | 1.49Å | |
| C4 | O4 | doub | 1.22Å | 1.25Å | |
| C6 | C5 | doub | 1.38Å | 1.39Å | |
| C5 | C21 | sing | 1.47Å | 1.50Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| O22 | C21 | doub | 1.22Å | 1.22Å | |
| C21 | N23 | sing | 1.35Å | 1.33Å | |
| N23 | C24 | sing | 1.46Å | 1.45Å | |
| N23 | HN23 | sing | 0.97Å | 1.00Å | |
| C24 | C25 | sing | 1.51Å | 1.51Å | |
| C24 | H24 | sing | 1.09Å | 1.10Å | |
| C24 | H24A | sing | 1.09Å | 1.10Å | |
| S26 | C25 | sing | 1.76Å | 1.73Å | Aromatic |
| C25 | C29 | doub | 1.33Å | 1.37Å | Aromatic |
| S26 | C27 | sing | 1.76Å | 1.73Å | Aromatic |
| C27 | C28 | doub | 1.33Å | 1.39Å | Aromatic |
| C27 | H27 | sing | 1.08Å | 1.08Å | |
| C28 | C29 | sing | 1.38Å | 1.40Å | Aromatic |
| C28 | H28 | sing | 1.08Å | 1.08Å | |
| C29 | H29 | sing | 1.08Å | 1.08Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C4' | O4' | sing | 1.45Å | 1.44Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| OP1 | HOP1 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP2 | P | O5' | 108.4° | 109.5° |
| OP2 | P | OP3 | 107.9° | 109.4° |
| OP2 | P | OP1 | 118.5° | 109.5° |
| O5' | P | OP3 | 100.9° | 109.5° |
| O5' | P | OP1 | 110.0° | 109.5° |
| P | O5' | C5' | 120.9° | 123.0° |
| OP3 | P | OP1 | 109.5° | 109.4° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| P | OP1 | HOP1 | 109.5° | 114.0° |
| C1' | N1 | C2 | 119.6° | 119.3° |
| C1' | N1 | C6 | 119.3° | 119.2° |
| N1 | C1' | C2' | 112.2° | 109.9° |
| N1 | C1' | O4' | 111.4° | 109.9° |
| N1 | C1' | H1' | 108.8° | 109.9° |
| C2 | N1 | C6 | 121.1° | 121.6° |
| N1 | C2 | O2 | 120.6° | 119.0° |
| N1 | C2 | N3 | 120.6° | 122.1° |
| N1 | C6 | C5 | 119.7° | 119.3° |
| N1 | C6 | H6 | 120.1° | 120.4° |
| O2 | C2 | N3 | 118.8° | 119.0° |
| C2 | N3 | C4 | 121.1° | 120.5° |
| C2 | N3 | HN3 | 119.5° | 119.7° |
| C4 | N3 | HN3 | 119.4° | 119.8° |
| N3 | C4 | C5 | 119.3° | 118.5° |
| N3 | C4 | O4 | 119.8° | 120.7° |
| C5 | C4 | O4 | 120.9° | 120.8° |
| C4 | C5 | C6 | 118.1° | 118.1° |
| C4 | C5 | C21 | 122.1° | 120.9° |
| C6 | C5 | C21 | 119.8° | 121.0° |
| C5 | C6 | H6 | 120.2° | 120.3° |
| C5 | C21 | O22 | 119.5° | 120.0° |
| C5 | C21 | N23 | 119.9° | 120.0° |
| C2' | C1' | O4' | 107.1° | 107.4° |
| C2' | C1' | H1' | 108.0° | 109.9° |
| C1' | C2' | C3' | 101.3° | 104.2° |
| C1' | C2' | H2' | 111.5° | 110.5° |
| C1' | C2' | H2'A | 111.5° | 110.5° |
| O4' | C1' | H1' | 109.2° | 109.9° |
| C1' | O4' | C4' | 109.6° | 106.9° |
| C3' | C2' | H2' | 111.5° | 110.5° |
| C3' | C2' | H2'A | 111.5° | 110.6° |
| C2' | C3' | O3' | 104.3° | 110.9° |
| C2' | C3' | C4' | 105.2° | 102.1° |
| C2' | C3' | H3' | 113.0° | 110.9° |
| H2' | C2' | H2'A | 109.5° | 110.4° |
| O22 | C21 | N23 | 120.6° | 120.0° |
| C21 | N23 | C24 | 124.0° | 120.0° |
| C21 | N23 | HN23 | 118.0° | 120.0° |
| C24 | N23 | HN23 | 118.0° | 120.0° |
| N23 | C24 | C25 | 105.3° | 109.5° |
| N23 | C24 | H24 | 110.5° | 109.4° |
| N23 | C24 | H24A | 110.5° | 109.5° |
| C25 | C24 | H24 | 110.5° | 109.4° |
| C25 | C24 | H24A | 110.5° | 109.5° |
| C24 | C25 | S26 | 117.8° | 125.2° |
| C24 | C25 | C29 | 133.1° | 125.2° |
| H24 | C24 | H24A | 109.5° | 109.5° |
| S26 | C25 | C29 | 109.2° | 109.6° |
| C25 | S26 | C27 | 95.6° | 91.0° |
| C25 | C29 | C28 | 112.2° | 114.9° |
| C25 | C29 | H29 | 123.9° | 122.5° |
| S26 | C27 | C28 | 105.4° | 109.6° |
| S26 | C27 | H27 | 127.3° | 125.2° |
| C28 | C27 | H27 | 127.3° | 125.2° |
| C27 | C28 | C29 | 117.6° | 114.9° |
| C27 | C28 | H28 | 121.2° | 122.6° |
| C29 | C28 | H28 | 121.2° | 122.5° |
| C28 | C29 | H29 | 123.9° | 122.6° |
| O3' | C3' | C4' | 106.3° | 110.9° |
| O3' | C3' | H3' | 114.3° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 112.8° | 110.9° |
| C3' | C4' | C5' | 113.5° | 110.6° |
| C3' | C4' | O4' | 106.3° | 103.6° |
| C3' | C4' | H4' | 108.0° | 110.7° |
| C5' | C4' | O4' | 111.8° | 110.6° |
| C5' | C4' | H4' | 108.0° | 110.5° |
| C4' | C5' | O5' | 109.4° | 109.5° |
| C4' | C5' | H5' | 109.5° | 109.5° |
| C4' | C5' | H5'A | 109.5° | 109.5° |
| O4' | C4' | H4' | 109.1° | 110.6° |
| O5' | C5' | H5' | 109.5° | 109.5° |
| O5' | C5' | H5'A | 109.5° | 109.5° |
| H5' | C5' | H5'A | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP2 | P | O5' | OP3 | 113.3° | 120.0° |
| OP2 | P | O5' | OP1 | 131.1° | 120.0° |
| OP2 | P | OP3 | OP1 | 130.3° | 120.0° |
| OP2 | P | O5' | C5' | 36.5° | 55.0° |
| OP2 | P | OP1 | HOP1 | 0.0° | 60.0° |
| OP2 | P | OP3 | HOP3 | 0.0° | 180.0° |
| O5' | P | OP3 | OP1 | 116.0° | 120.0° |
| P | O5' | C5' | C4' | 146.3° | 180.0° |
| P | O5' | C5' | H5' | 93.7° | 60.0° |
| P | O5' | C5' | H5'A | 26.4° | 60.0° |
| O5' | P | OP1 | HOP1 | 125.5° | 180.0° |
| O5' | P | OP3 | HOP3 | 113.7° | 60.0° |
| OP3 | P | O5' | C5' | 76.8° | 65.0° |
| OP3 | P | OP1 | HOP1 | 124.4° | 60.0° |
| OP1 | P | O5' | C5' | 167.6° | 175.0° |
| OP1 | P | OP3 | HOP3 | 130.3° | 60.0° |
| C1' | N1 | C2 | C6 | 179.2° | 179.8° |
| C1' | N1 | C2 | O2 | 0.2° | 0.2° |
| C1' | N1 | C2 | N3 | 179.5° | 179.7° |
| C1' | N1 | C6 | C5 | 180.0° | 179.8° |
| C1' | N1 | C6 | H6 | 0.0° | 0.3° |
| N1 | C1' | C2' | O4' | 122.6° | 119.5° |
| N1 | C1' | C2' | H1' | 119.9° | 121.1° |
| N1 | C1' | O4' | H1' | 120.2° | 121.1° |
| N1 | C1' | C2' | C3' | 152.9° | 121.5° |
| N1 | C1' | C2' | H2' | 88.4° | 119.9° |
| N1 | C1' | C2' | H2'A | 34.2° | 2.6° |
| N1 | C1' | O4' | C4' | 141.0° | 145.8° |
| N1 | C2 | O2 | N3 | 179.7° | 179.9° |
| N1 | C2 | N3 | C4 | 0.1° | 0.0° |
| N1 | C2 | N3 | HN3 | 180.0° | 180.0° |
| C2 | N1 | C6 | C5 | 0.8° | 0.0° |
| C2 | N1 | C6 | H6 | 179.2° | 180.0° |
| C2 | N1 | C1' | C2' | 110.7° | 64.7° |
| C2 | N1 | C1' | O4' | 129.2° | 53.2° |
| C2 | N1 | C1' | H1' | 8.7° | 174.3° |
| C6 | N1 | C2 | O2 | 179.4° | 179.9° |
| C6 | N1 | C2 | N3 | 0.3° | 0.0° |
| N1 | C6 | C5 | C4 | 0.9° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | C21 | 179.6° | 180.0° |
| C6 | N1 | C1' | C2' | 70.1° | 115.1° |
| C6 | N1 | C1' | O4' | 50.0° | 127.0° |
| C6 | N1 | C1' | H1' | 170.5° | 6.0° |
| O2 | C2 | N3 | C4 | 179.8° | 179.9° |
| O2 | C2 | N3 | HN3 | 0.3° | 0.0° |
| C2 | N3 | C4 | HN3 | 180.0° | 180.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.0° |
| C2 | N3 | C4 | O4 | 179.8° | 180.0° |
| N3 | C4 | C5 | O4 | 179.9° | 180.0° |
| N3 | C4 | C5 | C6 | 0.6° | 0.0° |
| N3 | C4 | C5 | C21 | 179.2° | 179.9° |
| HN3 | N3 | C4 | C5 | 179.9° | 180.0° |
| HN3 | N3 | C4 | O4 | 0.2° | 0.0° |
| C4 | C5 | C6 | C21 | 178.7° | 180.0° |
| C4 | C5 | C6 | H6 | 179.1° | 180.0° |
| C4 | C5 | C21 | O22 | 175.7° | 174.3° |
| C4 | C5 | C21 | N23 | 5.4° | 5.6° |
| O4 | C4 | C5 | C6 | 179.4° | 180.0° |
| O4 | C4 | C5 | C21 | 0.7° | 0.0° |
| C6 | C5 | C21 | O22 | 5.7° | 5.7° |
| C6 | C5 | C21 | N23 | 173.2° | 174.4° |
| C21 | C5 | C6 | H6 | 0.4° | 0.0° |
| C5 | C21 | O22 | N23 | 178.8° | 180.0° |
| C5 | C21 | N23 | C24 | 178.8° | 174.9° |
| C5 | C21 | N23 | HN23 | 1.2° | 5.0° |
| C2' | C1' | O4' | H1' | 116.7° | 119.5° |
| C1' | C2' | C3' | H2' | 118.6° | 118.7° |
| C1' | C2' | C3' | H2'A | 118.7° | 118.8° |
| C1' | C2' | H2' | H2'A | 123.8° | 122.5° |
| C1' | C2' | C3' | O3' | 80.8° | 139.1° |
| C1' | C2' | C3' | C4' | 31.0° | 20.9° |
| C1' | C2' | C3' | H3' | 154.5° | 97.3° |
| C2' | C1' | O4' | C4' | 18.0° | 26.4° |
| O4' | C1' | C2' | C3' | 30.3° | 2.0° |
| O4' | C1' | C2' | H2' | 149.0° | 120.7° |
| O4' | C1' | C2' | H2'A | 88.3° | 116.9° |
| C1' | O4' | C4' | C3' | 2.2° | 39.9° |
| C1' | O4' | C4' | C5' | 122.1° | 158.5° |
| C1' | O4' | C4' | H4' | 118.5° | 78.7° |
| H1' | C1' | C2' | C3' | 87.2° | 117.5° |
| H1' | C1' | C2' | H2' | 31.5° | 1.2° |
| H1' | C1' | C2' | H2'A | 154.2° | 123.7° |
| H1' | C1' | O4' | C4' | 98.7° | 93.1° |
| C3' | C2' | H2' | H2'A | 123.8° | 122.7° |
| C2' | C3' | O3' | C4' | 110.9° | 112.7° |
| C2' | C3' | O3' | H3' | 123.9° | 123.6° |
| C2' | C3' | C4' | H3' | 123.6° | 118.2° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
| C2' | C3' | C4' | C5' | 101.6° | 155.5° |
| C2' | C3' | C4' | O4' | 21.7° | 37.0° |
| C2' | C3' | C4' | H4' | 138.7° | 81.6° |
| H2' | C2' | C3' | O3' | 37.9° | 20.4° |
| H2' | C2' | C3' | C4' | 149.6° | 97.8° |
| H2' | C2' | C3' | H3' | 86.9° | 144.0° |
| H2'A | C2' | C3' | O3' | 160.6° | 102.2° |
| H2'A | C2' | C3' | C4' | 87.7° | 139.6° |
| H2'A | C2' | C3' | H3' | 35.8° | 21.4° |
| O22 | C21 | N23 | C24 | 0.0° | 5.1° |
| O22 | C21 | N23 | HN23 | 180.0° | 174.9° |
| C21 | N23 | C24 | HN23 | 180.0° | 179.9° |
| C21 | N23 | C24 | C25 | 87.7° | 180.0° |
| C21 | N23 | C24 | H24 | 31.7° | 60.1° |
| C21 | N23 | C24 | H24A | 153.0° | 60.0° |
| N23 | C24 | C25 | H24 | 119.3° | 119.9° |
| N23 | C24 | C25 | H24A | 119.4° | 120.0° |
| N23 | C24 | H24 | H24A | 121.9° | 120.0° |
| N23 | C24 | C25 | S26 | 125.0° | 89.7° |
| N23 | C24 | C25 | C29 | 54.9° | 90.0° |
| HN23 | N23 | C24 | C25 | 92.3° | 0.0° |
| HN23 | N23 | C24 | H24 | 148.3° | 120.0° |
| HN23 | N23 | C24 | H24A | 27.0° | 119.9° |
| C25 | C24 | H24 | H24A | 121.9° | 120.0° |
| C24 | C25 | S26 | C29 | 179.9° | 179.7° |
| C24 | C25 | S26 | C27 | 179.8° | 180.0° |
| C24 | C25 | C29 | C28 | 179.8° | 179.8° |
| C24 | C25 | C29 | H29 | 0.2° | 0.1° |
| H24 | C24 | C25 | S26 | 5.6° | 150.3° |
| H24 | C24 | C25 | C29 | 174.2° | 30.0° |
| H24A | C24 | C25 | S26 | 115.7° | 30.3° |
| H24A | C24 | C25 | C29 | 64.5° | 150.0° |
| C25 | S26 | C27 | C28 | 0.0° | 0.0° |
| C25 | S26 | C27 | H27 | 180.0° | 180.0° |
| S26 | C25 | C29 | C28 | 0.0° | 0.4° |
| S26 | C25 | C29 | H29 | 179.9° | 179.8° |
| C29 | C25 | S26 | C27 | 0.0° | 0.2° |
| C25 | C29 | C28 | C27 | 0.0° | 0.4° |
| C25 | C29 | C28 | H29 | 180.0° | 179.8° |
| C25 | C29 | C28 | H28 | 180.0° | 179.8° |
| S26 | C27 | C28 | H27 | 180.0° | 180.0° |
| S26 | C27 | C28 | C29 | 0.0° | 0.3° |
| S26 | C27 | C28 | H28 | 180.0° | 180.0° |
| C27 | C28 | C29 | H28 | 180.0° | 179.7° |
| C27 | C28 | C29 | H29 | 180.0° | 179.8° |
| H27 | C27 | C28 | C29 | 180.0° | 179.8° |
| H27 | C27 | C28 | H28 | 0.0° | 0.1° |
| H28 | C28 | C29 | H29 | 0.0° | 0.0° |
| O3' | C3' | C4' | H3' | 126.1° | 123.6° |
| O3' | C3' | C4' | C5' | 148.0° | 86.3° |
| O3' | C3' | C4' | O4' | 88.6° | 155.2° |
| O3' | C3' | C4' | H4' | 28.4° | 36.6° |
| C4' | C3' | O3' | HO3' | 69.1° | 174.2° |
| C3' | C4' | C5' | O4' | 120.3° | 114.2° |
| C3' | C4' | C5' | H4' | 119.7° | 122.9° |
| C3' | C4' | O4' | H4' | 116.3° | 118.6° |
| C3' | C4' | C5' | O5' | 49.5° | 175.0° |
| C3' | C4' | C5' | H5' | 169.5° | 55.0° |
| C3' | C4' | C5' | H5'A | 70.5° | 65.0° |
| H3' | C3' | O3' | HO3' | 56.1° | 62.2° |
| H3' | C3' | C4' | C5' | 22.0° | 37.3° |
| H3' | C3' | C4' | O4' | 145.3° | 81.2° |
| H3' | C3' | C4' | H4' | 97.7° | 160.2° |
| C5' | C4' | O4' | H4' | 119.3° | 122.8° |
| C4' | C5' | O5' | H5' | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
| C4' | C5' | H5' | H5'A | 120.0° | 120.0° |
| O4' | C4' | C5' | O5' | 70.8° | 70.8° |
| O4' | C4' | C5' | H5' | 49.2° | 169.2° |
| O4' | C4' | C5' | H5'A | 169.2° | 49.2° |
| H4' | C4' | C5' | O5' | 169.2° | 52.1° |
| H4' | C4' | C5' | H5' | 70.8° | 67.9° |
| H4' | C4' | C5' | H5'A | 49.2° | 172.1° |
| O5' | C5' | H5' | H5'A | 120.0° | 120.0° |
