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12A

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OP3Psing1.61Å1.59Å
OP3HOP3sing0.97Å0.95Å
POP1doub1.48Å1.49Å
POP2sing1.61Å1.48Å
PO5'sing1.61Å1.59Å
OP2HOP2sing0.97Å0.95Å
O5'C5'sing1.43Å1.40Å
C5'C4'sing1.53Å1.50Å
C5'H5'sing1.09Å1.11Å
C5'H5''sing1.09Å1.11Å
C4'O4'sing1.44Å1.44Å
C4'C3'sing1.54Å1.52Å
C4'H4'sing1.09Å1.12Å
O4'C1'sing1.44Å1.40Å
C3'O3'sing1.43Å1.42Å
C3'C2'sing1.55Å1.52Å
C3'H3'sing1.09Å1.11Å
O3'HO3'sing0.97Å0.95Å
C2'O2'sing1.43Å1.41Å
C2'C1'sing1.54Å1.53Å
C2'H2'sing1.09Å1.11Å
O2'HO2'sing0.97Å0.95Å
C1'N9sing1.47Å1.45Å
C1'H1'sing1.09Å1.12Å
N9C8sing1.36Å1.36ÅAromatic
N9C4sing1.37Å1.36ÅAromatic
C8N7doub1.30Å1.30ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.36Å1.38ÅAromatic
C5C6sing1.40Å1.38ÅAromatic
C5C4doub1.40Å1.38ÅAromatic
C6N6sing1.39Å1.31Å
C6N1doub1.33Å1.34ÅAromatic
N6CCsing1.35Å1.32Å
N6HN6sing0.97Å1.02Å
N1C2sing1.33Å1.33ÅAromatic
C2N3doub1.32Å1.32ÅAromatic
C2S2sing1.76Å1.34Å
N3C4sing1.33Å1.34ÅAromatic
S2C2Msing1.81Å1.82Å
C2MH2M1sing1.09Å1.11Å
C2MH2M2sing1.09Å1.12Å
C2MH2M3sing1.09Å1.12Å
CCOOdoub1.22Å1.23Å
CCNsing1.35Å1.32Å
NCAsing1.46Å1.46Å
NHsing0.97Å1.02Å
CACsing1.51Å1.54Å
CACBsing1.53Å1.56Å
CAHAsing1.09Å1.12Å
COdoub1.21Å1.26Å
COXTsing1.34Å1.26Å
OXTHXTsing0.97Å0.95Å
CBOG1sing1.43Å1.43Å
CBCG2sing1.53Å1.54Å
CBHBsing1.09Å1.11Å
OG1HG1sing0.97Å0.95Å
CG2HG21sing1.09Å1.11Å
CG2HG22sing1.09Å1.12Å
CG2HG23sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
POP3HOP3108.5°106.8°
OP3POP1108.5°109.4°
OP3POP2108.3°109.4°
OP3PO5'102.6°109.5°
OP1POP2120.0°109.5°
OP1PO5'107.5°109.5°
OP2PO5'108.4°109.5°
POP2HOP2108.3°106.8°
PO5'C5'120.1°106.8°
O5'C5'C4'110.3°109.5°
O5'C5'H5'111.9°109.5°
O5'C5'H5''111.9°109.4°
C4'C5'H5'111.9°109.6°
C4'C5'H5''111.9°109.4°
C5'C4'O4'109.8°110.4°
C5'C4'C3'112.2°110.4°
C5'C4'H4'106.5°110.3°
H5'C5'H5''98.5°109.4°
O4'C4'C3'106.5°104.8°
O4'C4'H4'112.2°110.5°
C4'O4'C1'109.3°105.3°
C3'C4'H4'109.8°110.3°
C4'C3'O3'106.7°110.5°
C4'C3'C2'102.7°104.1°
C4'C3'H3'116.5°110.5°
O4'C1'C2'106.5°104.9°
O4'C1'N9105.4°110.4°
O4'C1'H1'114.6°110.4°
O3'C3'C2'112.5°110.5°
O3'C3'H3'107.4°110.5°
C3'O3'HO3'106.7°106.8°
C2'C3'H3'111.1°110.6°
C3'C2'O2'113.3°110.5°
C3'C2'C1'100.7°104.0°
C3'C2'H2'112.9°110.5°
O2'C2'C1'109.6°110.8°
O2'C2'H2'104.4°110.4°
C2'O2'HO2'113.3°106.8°
C1'C2'H2'116.3°110.4°
C2'C1'N9111.6°110.4°
C2'C1'H1'108.8°110.4°
N9C1'H1'109.9°110.3°
C1'N9C8125.8°126.3°
C1'N9C4128.1°126.3°
C8N9C4106.1°107.4°
N9C8N7113.8°110.0°
N9C8H8125.0°125.0°
N9C4C5105.6°106.0°
N9C4N3127.4°134.8°
N7C8H8121.2°125.0°
C8N7C5103.7°109.4°
N7C5C6132.0°134.5°
N7C5C4110.8°107.1°
C6C5C4117.2°118.3°
C5C6N6123.8°120.8°
C5C6N1117.9°118.6°
C5C4N3127.0°119.2°
N6C6N1118.3°120.7°
C6N6CC117.7°120.1°
C6N6HN6109.2°120.0°
C6N1C2118.7°121.2°
CCN6HN6109.3°120.0°
N6CCOO120.4°120.0°
N6CCN118.2°120.0°
N1C2N3129.1°122.2°
N1C2S2117.8°118.9°
N3C2S2113.1°118.8°
C2N3C4110.2°120.5°
C2S2C2M102.4°100.0°
S2C2MH2M1102.4°109.5°
S2C2MH2M2114.8°109.5°
S2C2MH2M3114.8°109.5°
H2M1C2MH2M2114.9°109.4°
H2M1C2MH2M3115.0°109.5°
H2M2C2MH2M395.6°109.5°
OOCCN121.5°120.0°
CCNCA120.6°120.0°
CCNH114.8°120.0°
CANH124.6°120.0°
NCAC112.1°109.5°
NCACB110.4°109.5°
NCAHA107.6°109.5°
CCACB111.1°109.4°
CCAHA106.8°109.5°
CACO117.1°120.0°
CACOXT119.4°120.0°
CBCAHA108.7°109.5°
CACBOG1109.7°109.5°
CACBCG2111.0°109.4°
CACBHB108.8°109.5°
OCOXT123.5°120.0°
COXTHXT119.3°120.0°
OG1CBCG2110.9°109.4°
OG1CBHB108.8°109.5°
CBOG1HG1109.7°106.8°
CG2CBHB107.5°109.4°
CBCG2HG21111.0°109.4°
CBCG2HG22111.6°109.4°
CBCG2HG23111.6°109.5°
HG21CG2HG22111.7°109.5°
HG21CG2HG23111.7°109.5°
HG22CG2HG2398.7°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OP3POP1OP2125.2°120.0°
OP3POP1O5'110.3°120.0°
OP3POP2O5'110.7°120.0°
OP3POP2HOP2180.0°60.0°
OP3PO5'C5'159.3°180.0°
HOP3OP3POP1180.0°60.0°
HOP3OP3POP248.2°60.0°
HOP3OP3PO5'66.4°180.0°
OP1POP2O5'124.0°120.0°
OP1POP2HOP254.7°180.0°
OP1PO5'C5'45.0°60.0°
OP2PO5'C5'86.2°60.0°
O5'POP2HOP269.3°60.0°
PO5'C5'C4'166.1°179.9°
PO5'C5'H5'68.6°59.9°
PO5'C5'H5''40.8°60.0°
O5'C5'C4'H5'125.2°120.1°
O5'C5'C4'H5''125.2°119.9°
O5'C5'H5'H5''117.8°120.0°
O5'C5'C4'O4'62.4°61.4°
O5'C5'C4'C3'179.5°176.9°
O5'C5'C4'H4'59.3°60.9°
C4'C5'H5'H5''117.9°119.9°
C5'C4'O4'C3'121.6°118.9°
C5'C4'O4'H4'118.2°122.2°
C5'C4'C3'H4'118.2°122.2°
C5'C4'O4'C1'124.8°159.5°
C5'C4'C3'O3'96.1°98.3°
C5'C4'C3'C2'145.4°143.0°
C5'C4'C3'H3'23.7°24.3°
H5'C5'C4'O4'62.8°178.5°
H5'C5'C4'C3'55.3°63.0°
H5'C5'C4'H4'175.5°59.2°
H5''C5'C4'O4'172.4°58.5°
H5''C5'C4'C3'54.2°57.0°
H5''C5'C4'H4'66.0°179.1°
O4'C4'C3'H4'121.7°118.9°
O4'C4'C3'O3'143.8°142.7°
O4'C4'C3'C2'25.3°24.1°
O4'C4'C3'H3'96.4°94.6°
C4'O4'C1'C2'20.5°40.5°
C4'O4'C1'N998.1°159.4°
C4'O4'C1'H1'140.9°78.4°
C3'C4'O4'C1'3.2°40.5°
C4'C3'O3'C2'111.8°114.6°
C4'C3'O3'H3'125.6°122.6°
C4'C3'C2'H3'125.2°118.7°
C4'C3'O3'HO3'180.0°180.0°
C4'C3'C2'O2'81.2°118.8°
C4'C3'C2'C1'35.8°0.1°
C4'C3'C2'H2'160.4°118.7°
H4'C4'O4'C1'117.0°78.3°
H4'C4'C3'O3'22.1°23.8°
H4'C4'C3'C2'96.4°94.8°
H4'C4'C3'H3'142.0°146.5°
O4'C1'C2'C3'35.4°23.9°
O4'C1'C2'O2'84.2°142.6°
O4'C1'C2'N9114.5°118.9°
O4'C1'C2'H1'124.0°118.9°
O4'C1'C2'H2'157.7°94.8°
O4'C1'N9H1'124.0°122.3°
O4'C1'N9C82.3°27.1°
O4'C1'N9C4177.7°153.0°
O3'C3'C2'H3'120.4°122.7°
O3'C3'C2'O2'33.1°0.1°
O3'C3'C2'C1'150.1°118.8°
O3'C3'C2'H2'85.3°122.6°
C2'C3'O3'HO3'68.1°65.4°
C3'C2'O2'C1'111.6°114.7°
C3'C2'O2'H2'123.2°122.6°
C3'C2'C1'H2'122.3°118.6°
C3'C2'O2'HO2'179.9°61.4°
C3'C2'C1'N979.1°142.8°
C3'C2'C1'H1'159.4°95.1°
H3'C3'O3'HO3'54.4°57.3°
H3'C3'C2'O2'153.6°122.6°
H3'C3'C2'C1'89.5°118.5°
H3'C3'C2'H2'35.2°0.0°
O2'C2'C1'H2'118.1°122.6°
O2'C2'C1'N9161.2°98.5°
O2'C2'C1'H1'39.8°23.7°
C1'C2'O2'HO2'68.3°176.2°
C2'C1'N9H1'120.8°122.2°
C2'C1'N9C8113.0°88.4°
C2'C1'N9C467.1°91.5°
H2'C2'O2'HO2'56.9°61.2°
H2'C2'C1'N943.1°24.1°
H2'C2'C1'H1'78.3°146.3°
C1'N9C8C4180.0°180.0°
C1'N9C8N7179.7°180.0°
C1'N9C8H80.3°0.0°
C1'N9C4C5179.6°180.0°
C1'N9C4N30.1°0.4°
H1'C1'N9C8126.3°149.3°
H1'C1'N9C453.7°30.7°
N9C8N7H8180.0°180.0°
N9C8N7C50.1°0.1°
C8N9C4C50.3°0.1°
C8N9C4N3179.9°179.7°
C4N9C8N70.2°0.1°
C4N9C8H8179.8°180.0°
N9C4C5N70.3°0.0°
N9C4C5C6179.6°180.0°
N9C4C5N3179.8°179.7°
N9C4N3C2179.5°179.9°
C8N7C5C6179.7°179.9°
C8N7C5C40.2°0.0°
H8C8N7C5180.0°180.0°
N7C5C6C4179.9°180.0°
N7C5C6N61.7°0.1°
N7C5C6N1179.5°180.0°
N7C5C4N3179.9°179.7°
C5C6N6N1178.8°179.9°
C5C6N6CC143.6°180.0°
C5C6N6HN691.2°0.1°
C5C6N1C21.2°0.0°
C6C5C4N30.2°0.3°
C4C5C6N6178.2°179.9°
C4C5C6N10.6°0.1°
C5C4N3C20.2°0.6°
C6N6CCHN6125.3°179.9°
N6C6N1C2177.7°179.9°
C6N6CCOO0.4°0.1°
C6N6CCN179.7°180.0°
N1C6N6CC35.2°0.1°
N1C6N6HN690.0°180.0°
C6N1C2N31.3°0.3°
C6N1C2S2178.2°180.0°
N6CCOON179.9°179.9°
N6CCNCA180.0°180.0°
N6CCNH0.0°0.1°
HN6N6CCOO124.9°180.0°
HN6N6CCN55.0°0.1°
N1C2N3S2179.5°179.8°
N1C2N3C40.8°0.5°
N1C2S2C2M17.0°0.0°
N3C2S2C2M163.4°179.7°
S2C2N3C4178.7°179.7°
C2S2C2MH2M1180.0°180.0°
C2S2C2MH2M254.7°60.0°
C2S2C2MH2M354.7°60.0°
S2C2MH2M1H2M2125.2°120.0°
S2C2MH2M1H2M3125.2°120.0°
S2C2MH2M2H2M3120.7°120.0°
H2M1C2MH2M2H2M3120.9°120.1°
OOCCNCA0.1°0.1°
OOCCNH179.9°179.9°
CCNCAH180.0°180.0°
CCNCAC23.2°90.0°
CCNCACB147.6°150.1°
CCNCAHA94.0°30.0°
NCACCB124.0°120.0°
NCACHA117.6°120.0°
NCACBHA117.8°120.0°
NCACO103.8°150.0°
NCACOXT74.2°29.9°
NCACBOG1158.8°59.9°
NCACBCG235.8°60.0°
NCACBHB82.3°180.0°
HNCAC156.8°90.0°
HNCACB32.4°29.9°
HNCAHA86.1°150.0°
CCACBHA117.2°119.9°
CACOOXT177.9°179.9°
CACOXTHXT179.9°180.0°
CCACBOG133.8°60.1°
CCACBCG289.2°180.0°
CCACBHB152.7°60.0°
CBCACO132.2°90.0°
CBCACOXT49.8°90.1°
CACBOG1CG2123.0°120.0°
CACBOG1HB118.9°120.1°
CACBCG2HB118.8°120.0°
CACBOG1HG1180.0°59.9°
CACBCG2HG21180.0°180.0°
CACBCG2HG2254.7°60.0°
CACBCG2HG2354.7°60.0°
HACACO13.8°30.0°
HACACOXT168.2°150.0°
HACACBOG183.5°180.0°
HACACBCG2153.6°60.0°
HACACBHB35.5°60.0°
OCOXTHXT2.0°0.1°
OG1CBCG2HB118.9°120.0°
OG1CBCG2HG2157.7°60.0°
OG1CBCG2HG22176.9°180.0°
OG1CBCG2HG2367.6°60.0°
CG2CBOG1HG157.0°60.0°
CBCG2HG21HG22125.3°119.9°
CBCG2HG21HG23125.3°120.0°
CBCG2HG22HG23117.5°120.0°
HBCBOG1HG161.1°180.0°
HBCBCG2HG2161.2°60.0°
HBCBCG2HG2264.2°60.0°
HBCBCG2HG23173.5°179.9°
HG21CG2HG22HG23117.6°120.1°

226262

PDB entries from 2024-10-16

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