127
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP1 | doub | 1.48Å | 1.53Å | |
P | OP2 | sing | 1.61Å | 1.48Å | |
P | OP3 | sing | 1.61Å | 1.61Å | |
P | O5' | sing | 1.61Å | 1.58Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.41Å | |
C5' | C4' | sing | 1.53Å | 1.50Å | |
C5' | H5' | sing | 1.09Å | 1.11Å | |
C5' | H5'' | sing | 1.09Å | 1.11Å | |
C4' | O4' | sing | 1.44Å | 1.46Å | |
C4' | C3' | sing | 1.54Å | 1.53Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.41Å | |
C3' | O3' | sing | 1.43Å | 1.44Å | |
C3' | C2' | sing | 1.55Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.43Å | 1.42Å | |
C2' | C1' | sing | 1.54Å | 1.53Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
O2' | CA' | sing | 1.43Å | 1.44Å | |
C1' | N1 | sing | 1.46Å | 1.48Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
N1 | C2 | sing | 1.35Å | 1.37Å | |
N1 | C6 | sing | 1.37Å | 1.39Å | |
C2 | O2 | doub | 1.22Å | 1.23Å | |
C2 | N3 | sing | 1.35Å | 1.38Å | |
N3 | C4 | sing | 1.35Å | 1.38Å | |
N3 | H3 | sing | 0.97Å | 1.02Å | |
C4 | O4 | doub | 1.22Å | 1.22Å | |
C4 | C5 | sing | 1.41Å | 1.45Å | |
C5 | C5M | sing | 1.51Å | 1.51Å | |
C5 | C6 | doub | 1.35Å | 1.34Å | |
C5M | H71 | sing | 1.09Å | 1.11Å | |
C5M | H72 | sing | 1.09Å | 1.12Å | |
C5M | H73 | sing | 1.09Å | 1.11Å | |
C6 | H6 | sing | 1.08Å | 1.10Å | |
CA' | CB' | sing | 1.53Å | 1.46Å | |
CA' | HA'1 | sing | 1.09Å | 1.12Å | |
CA' | HA'2 | sing | 1.09Å | 1.12Å | |
CB' | OC' | sing | 1.43Å | 1.44Å | |
CB' | HB'1 | sing | 1.09Å | 1.11Å | |
CB' | HB'2 | sing | 1.09Å | 1.12Å | |
OC' | ND' | sing | 1.46Å | 1.51Å | |
ND' | HD'1 | sing | 1.01Å | 1.02Å | |
ND' | HD'2 | sing | 1.01Å | 1.02Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | OP2 | 119.2° | 109.5° |
OP1 | P | OP3 | 103.5° | 109.5° |
OP1 | P | O5' | 107.6° | 109.5° |
OP2 | P | OP3 | 112.7° | 109.4° |
OP2 | P | O5' | 106.9° | 109.5° |
P | OP2 | HOP2 | 119.2° | 106.8° |
OP3 | P | O5' | 106.2° | 109.5° |
P | OP3 | HOP3 | 103.5° | 106.8° |
P | O5' | C5' | 122.1° | 106.9° |
O5' | C5' | C4' | 109.2° | 109.5° |
O5' | C5' | H5' | 112.3° | 109.4° |
O5' | C5' | H5'' | 112.3° | 109.5° |
C4' | C5' | H5' | 112.3° | 109.5° |
C4' | C5' | H5'' | 112.3° | 109.4° |
C5' | C4' | O4' | 110.1° | 110.4° |
C5' | C4' | C3' | 115.4° | 110.5° |
C5' | C4' | H4' | 103.1° | 110.3° |
H5' | C5' | H5'' | 98.2° | 109.5° |
O4' | C4' | C3' | 102.9° | 104.8° |
O4' | C4' | H4' | 115.5° | 110.3° |
C4' | O4' | C1' | 109.1° | 105.3° |
C3' | C4' | H4' | 110.2° | 110.3° |
C4' | C3' | O3' | 114.6° | 110.6° |
C4' | C3' | C2' | 100.3° | 104.1° |
C4' | C3' | H3' | 112.6° | 110.5° |
O4' | C1' | C2' | 107.0° | 104.9° |
O4' | C1' | N1 | 108.7° | 110.4° |
O4' | C1' | H1' | 112.2° | 110.4° |
O3' | C3' | C2' | 110.3° | 110.6° |
O3' | C3' | H3' | 103.0° | 110.4° |
C3' | O3' | HO3' | 114.5° | 106.8° |
C2' | C3' | H3' | 116.6° | 110.6° |
C3' | C2' | O2' | 110.0° | 110.5° |
C3' | C2' | C1' | 100.4° | 104.0° |
C3' | C2' | H2' | 115.0° | 110.5° |
O2' | C2' | C1' | 109.6° | 110.8° |
O2' | C2' | H2' | 106.6° | 110.4° |
C2' | O2' | CA' | 116.6° | 106.9° |
C1' | C2' | H2' | 115.3° | 110.4° |
C2' | C1' | N1 | 111.1° | 110.3° |
C2' | C1' | H1' | 109.8° | 110.4° |
O2' | CA' | CB' | 111.7° | 109.5° |
O2' | CA' | HA'1 | 111.4° | 109.5° |
O2' | CA' | HA'2 | 111.4° | 109.5° |
N1 | C1' | H1' | 108.1° | 110.3° |
C1' | N1 | C2 | 116.4° | 119.7° |
C1' | N1 | C6 | 122.0° | 119.7° |
C2 | N1 | C6 | 121.5° | 120.6° |
N1 | C2 | O2 | 122.8° | 119.5° |
N1 | C2 | N3 | 114.6° | 120.9° |
N1 | C6 | C5 | 123.5° | 119.7° |
N1 | C6 | H6 | 119.8° | 120.1° |
O2 | C2 | N3 | 122.6° | 119.6° |
C2 | N3 | C4 | 127.1° | 120.3° |
C2 | N3 | H3 | 116.2° | 119.9° |
C4 | N3 | H3 | 116.7° | 119.8° |
N3 | C4 | O4 | 119.8° | 120.3° |
N3 | C4 | C5 | 115.5° | 119.3° |
O4 | C4 | C5 | 124.7° | 120.3° |
C4 | C5 | C5M | 119.1° | 120.4° |
C4 | C5 | C6 | 117.7° | 119.1° |
C5M | C5 | C6 | 123.2° | 120.5° |
C5 | C5M | H71 | 119.1° | 109.5° |
C5 | C5M | H72 | 108.7° | 109.5° |
C5 | C5M | H73 | 108.7° | 109.4° |
C5 | C6 | H6 | 116.6° | 120.2° |
H71 | C5M | H72 | 108.8° | 109.5° |
H71 | C5M | H73 | 108.8° | 109.5° |
H72 | C5M | H73 | 101.2° | 109.4° |
CB' | CA' | HA'1 | 111.4° | 109.4° |
CB' | CA' | HA'2 | 111.4° | 109.5° |
CA' | CB' | OC' | 113.1° | 109.5° |
CA' | CB' | HB'1 | 110.9° | 109.5° |
CA' | CB' | HB'2 | 110.8° | 109.4° |
HA'1 | CA' | HA'2 | 98.9° | 109.5° |
OC' | CB' | HB'1 | 110.9° | 109.5° |
OC' | CB' | HB'2 | 110.8° | 109.5° |
CB' | OC' | ND' | 111.7° | 106.8° |
HB'1 | CB' | HB'2 | 99.4° | 109.4° |
OC' | ND' | HD'1 | 111.8° | 106.7° |
OC' | ND' | HD'2 | 111.4° | 106.8° |
HD'1 | ND' | HD'2 | 111.4° | 106.7° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | OP2 | OP3 | 121.5° | 120.0° |
OP1 | P | OP2 | O5' | 122.2° | 120.0° |
OP1 | P | OP3 | O5' | 113.2° | 120.0° |
OP1 | P | OP2 | HOP2 | 180.0° | 59.9° |
OP1 | P | OP3 | HOP3 | 180.0° | 180.0° |
OP1 | P | O5' | C5' | 50.8° | 60.0° |
OP2 | P | OP3 | O5' | 116.7° | 120.0° |
OP2 | P | OP3 | HOP3 | 49.9° | 60.0° |
OP2 | P | O5' | C5' | 180.0° | 180.0° |
OP3 | P | OP2 | HOP2 | 58.5° | 60.1° |
OP3 | P | O5' | C5' | 59.5° | 60.0° |
O5' | P | OP2 | HOP2 | 57.8° | 180.0° |
O5' | P | OP3 | HOP3 | 66.8° | 60.0° |
P | O5' | C5' | C4' | 170.8° | 180.0° |
P | O5' | C5' | H5' | 63.9° | 60.0° |
P | O5' | C5' | H5'' | 45.6° | 60.0° |
O5' | C5' | C4' | H5' | 125.2° | 120.0° |
O5' | C5' | C4' | H5'' | 125.2° | 120.0° |
O5' | C5' | H5' | H5'' | 118.3° | 120.0° |
O5' | C5' | C4' | O4' | 69.5° | 61.4° |
O5' | C5' | C4' | C3' | 46.4° | 176.9° |
O5' | C5' | C4' | H4' | 166.7° | 60.8° |
C4' | C5' | H5' | H5'' | 118.2° | 120.0° |
C5' | C4' | O4' | C3' | 123.6° | 119.0° |
C5' | C4' | O4' | H4' | 116.3° | 122.2° |
C5' | C4' | C3' | H4' | 116.3° | 122.2° |
C5' | C4' | O4' | C1' | 147.6° | 159.5° |
C5' | C4' | C3' | O3' | 80.2° | 98.3° |
C5' | C4' | C3' | C2' | 161.7° | 143.0° |
C5' | C4' | C3' | H3' | 37.0° | 24.2° |
H5' | C5' | C4' | O4' | 165.3° | 178.6° |
H5' | C5' | C4' | C3' | 78.8° | 63.1° |
H5' | C5' | C4' | H4' | 41.5° | 59.2° |
H5'' | C5' | C4' | O4' | 55.8° | 58.5° |
H5'' | C5' | C4' | C3' | 171.7° | 57.0° |
H5'' | C5' | C4' | H4' | 68.1° | 179.2° |
O4' | C4' | C3' | H4' | 123.7° | 118.8° |
O4' | C4' | C3' | O3' | 159.9° | 142.7° |
O4' | C4' | C3' | C2' | 41.7° | 24.0° |
O4' | C4' | C3' | H3' | 82.9° | 94.7° |
C4' | O4' | C1' | C2' | 3.6° | 40.4° |
C4' | O4' | C1' | N1 | 116.4° | 159.3° |
C4' | O4' | C1' | H1' | 124.0° | 78.5° |
C3' | C4' | O4' | C1' | 24.0° | 40.4° |
C4' | C3' | O3' | C2' | 112.3° | 114.7° |
C4' | C3' | O3' | H3' | 122.6° | 122.6° |
C4' | C3' | C2' | H3' | 121.9° | 118.7° |
C4' | C3' | O3' | HO3' | 180.0° | 61.4° |
C4' | C3' | C2' | O2' | 72.7° | 118.9° |
C4' | C3' | C2' | C1' | 42.7° | 0.1° |
C4' | C3' | C2' | H2' | 167.0° | 118.6° |
H4' | C4' | O4' | C1' | 96.1° | 78.3° |
H4' | C4' | C3' | O3' | 36.1° | 24.0° |
H4' | C4' | C3' | C2' | 82.0° | 94.8° |
H4' | C4' | C3' | H3' | 153.3° | 146.5° |
O4' | C1' | C2' | C3' | 29.7° | 23.8° |
O4' | C1' | C2' | O2' | 86.0° | 142.6° |
O4' | C1' | C2' | N1 | 118.4° | 118.9° |
O4' | C1' | C2' | H1' | 122.0° | 118.9° |
O4' | C1' | C2' | H2' | 153.8° | 94.7° |
O4' | C1' | N1 | H1' | 122.0° | 122.3° |
O4' | C1' | N1 | C2 | 157.8° | 57.0° |
O4' | C1' | N1 | C6 | 22.0° | 122.9° |
O3' | C3' | C2' | H3' | 116.9° | 122.6° |
O3' | C3' | C2' | O2' | 48.5° | 0.2° |
O3' | C3' | C2' | C1' | 163.9° | 118.8° |
O3' | C3' | C2' | H2' | 71.7° | 122.7° |
C2' | C3' | O3' | HO3' | 67.7° | 176.1° |
C3' | C2' | O2' | C1' | 109.4° | 114.7° |
C3' | C2' | O2' | H2' | 125.2° | 122.6° |
C3' | C2' | C1' | H2' | 124.1° | 118.6° |
C3' | C2' | O2' | CA' | 170.1° | 91.4° |
C3' | C2' | C1' | N1 | 88.8° | 142.8° |
C3' | C2' | C1' | H1' | 151.7° | 95.1° |
H3' | C3' | O3' | HO3' | 57.4° | 61.2° |
H3' | C3' | C2' | O2' | 165.4° | 122.4° |
H3' | C3' | C2' | C1' | 79.2° | 118.6° |
H3' | C3' | C2' | H2' | 45.2° | 0.1° |
O2' | C2' | C1' | H2' | 120.2° | 122.7° |
O2' | C2' | C1' | N1 | 155.5° | 98.5° |
O2' | C2' | C1' | H1' | 36.0° | 23.7° |
C2' | O2' | CA' | CB' | 173.5° | 180.0° |
C2' | O2' | CA' | HA'1 | 48.2° | 60.0° |
C2' | O2' | CA' | HA'2 | 61.2° | 60.0° |
C1' | C2' | O2' | CA' | 80.5° | 153.8° |
C2' | C1' | N1 | H1' | 120.5° | 122.2° |
C2' | C1' | N1 | C2 | 84.8° | 58.5° |
C2' | C1' | N1 | C6 | 95.4° | 121.6° |
H2' | C2' | O2' | CA' | 44.9° | 31.2° |
H2' | C2' | C1' | N1 | 35.4° | 24.2° |
H2' | C2' | C1' | H1' | 84.2° | 146.3° |
O2' | CA' | CB' | HA'1 | 125.3° | 120.0° |
O2' | CA' | CB' | HA'2 | 125.3° | 120.0° |
O2' | CA' | HA'1 | HA'2 | 117.3° | 120.0° |
O2' | CA' | CB' | OC' | 76.5° | 60.0° |
O2' | CA' | CB' | HB'1 | 48.8° | 180.0° |
O2' | CA' | CB' | HB'2 | 158.3° | 60.1° |
C1' | N1 | C2 | C6 | 179.8° | 179.9° |
C1' | N1 | C2 | O2 | 2.8° | 0.1° |
C1' | N1 | C2 | N3 | 178.1° | 180.0° |
C1' | N1 | C6 | C5 | 179.0° | 179.9° |
C1' | N1 | C6 | H6 | 1.0° | 0.1° |
H1' | C1' | N1 | C2 | 35.7° | 179.3° |
H1' | C1' | N1 | C6 | 144.1° | 0.6° |
N1 | C2 | O2 | N3 | 179.0° | 179.9° |
N1 | C2 | N3 | C4 | 1.0° | 0.2° |
N1 | C2 | N3 | H3 | 179.0° | 179.9° |
C2 | N1 | C6 | C5 | 0.8° | 0.0° |
C2 | N1 | C6 | H6 | 179.2° | 180.0° |
C6 | N1 | C2 | O2 | 177.4° | 180.0° |
C6 | N1 | C2 | N3 | 1.7° | 0.1° |
N1 | C6 | C5 | C4 | 0.8° | 0.3° |
N1 | C6 | C5 | C5M | 179.2° | 179.9° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
O2 | C2 | N3 | C4 | 178.0° | 179.7° |
O2 | C2 | N3 | H3 | 1.9° | 0.1° |
C2 | N3 | C4 | H3 | 180.0° | 179.8° |
C2 | N3 | C4 | O4 | 178.1° | 180.0° |
C2 | N3 | C4 | C5 | 0.5° | 0.5° |
N3 | C4 | O4 | C5 | 178.4° | 179.5° |
N3 | C4 | C5 | C5M | 178.6° | 179.8° |
N3 | C4 | C5 | C6 | 1.4° | 0.5° |
H3 | N3 | C4 | O4 | 1.9° | 0.3° |
H3 | N3 | C4 | C5 | 179.5° | 179.7° |
O4 | C4 | C5 | C5M | 2.9° | 0.3° |
O4 | C4 | C5 | C6 | 177.1° | 180.0° |
C4 | C5 | C5M | C6 | 180.0° | 179.6° |
C4 | C5 | C5M | H71 | 180.0° | 0.4° |
C4 | C5 | C5M | H72 | 54.7° | 119.7° |
C4 | C5 | C5M | H73 | 54.7° | 120.4° |
C4 | C5 | C6 | H6 | 179.2° | 179.7° |
C5 | C5M | H71 | H72 | 125.3° | 120.0° |
C5 | C5M | H71 | H73 | 125.3° | 120.0° |
C5 | C5M | H72 | H73 | 114.4° | 119.9° |
C5M | C5 | C6 | H6 | 0.8° | 0.1° |
C6 | C5 | C5M | H71 | 0.0° | 180.0° |
C6 | C5 | C5M | H72 | 125.3° | 59.9° |
C6 | C5 | C5M | H73 | 125.3° | 60.0° |
H71 | C5M | H72 | H73 | 114.5° | 120.0° |
CB' | CA' | HA'1 | HA'2 | 117.3° | 120.0° |
CA' | CB' | OC' | HB'1 | 125.3° | 120.0° |
CA' | CB' | OC' | HB'2 | 125.2° | 120.0° |
CA' | CB' | HB'1 | HB'2 | 116.7° | 119.9° |
CA' | CB' | OC' | ND' | 46.2° | 180.0° |
HA'1 | CA' | CB' | OC' | 158.2° | 60.0° |
HA'1 | CA' | CB' | HB'1 | 76.5° | 60.0° |
HA'1 | CA' | CB' | HB'2 | 33.0° | 180.0° |
HA'2 | CA' | CB' | OC' | 48.8° | 180.0° |
HA'2 | CA' | CB' | HB'1 | 174.1° | 60.0° |
HA'2 | CA' | CB' | HB'2 | 76.4° | 60.0° |
OC' | CB' | HB'1 | HB'2 | 116.7° | 120.1° |
CB' | OC' | ND' | HD'1 | 180.0° | 180.0° |
CB' | OC' | ND' | HD'2 | 54.7° | 66.2° |
HB'1 | CB' | OC' | ND' | 171.5° | 60.0° |
HB'2 | CB' | OC' | ND' | 79.1° | 60.0° |
OC' | ND' | HD'1 | HD'2 | 125.3° | 113.8° |