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126

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
POP1doub1.48Å1.48Å
POP2sing1.61Å1.48Å
POP3sing1.61Å1.61Å
PO5'sing1.61Å1.59Å
OP2HOP2sing0.97Å0.95Å
OP3HOP3sing0.97Å0.95Å
O5'C5'sing1.43Å1.43Å
C5'C4'sing1.53Å1.50Å
C5'H5'sing1.09Å1.11Å
C5'H5''sing1.09Å1.11Å
C4'O4'sing1.44Å1.46Å
C4'C3'sing1.54Å1.52Å
C4'H4'sing1.09Å1.11Å
O4'C1'sing1.44Å1.42Å
C3'O3'sing1.43Å1.42Å
C3'C2'sing1.55Å1.52Å
C3'H3'sing1.09Å1.11Å
O3'HO3'sing0.97Å0.95Å
C2'O2'sing1.43Å1.41Å
C2'C1'sing1.55Å1.53Å
C2'H2'sing1.09Å1.12Å
O2'CA'sing1.43Å1.43Å
C1'N1sing1.47Å1.48Å
C1'H1'sing1.09Å1.12Å
N1C2sing1.34Å1.37Å
N1C6sing1.37Å1.38Å
C2O2doub1.22Å1.22Å
C2N3sing1.35Å1.37Å
N3C4sing1.35Å1.38Å
N3H3sing0.97Å1.02Å
C4O4doub1.22Å1.22Å
C4C5sing1.41Å1.45Å
C5C5Msing1.51Å1.50Å
C5C6doub1.35Å1.34Å
C5MH71sing1.09Å1.11Å
C5MH72sing1.09Å1.12Å
C5MH73sing1.09Å1.11Å
C6H6sing1.08Å1.10Å
CA'CB'sing1.53Å1.43Å
CA'HA'1sing1.09Å1.12Å
CA'HA'2sing1.09Å1.12Å
CB'OC'sing1.43Å1.43Å
CB'HB'1sing1.09Å1.11Å
CB'HB'2sing1.09Å1.12Å
OC'CD'sing1.43Å1.43Å
CD'CE'sing1.53Å1.43Å
CD'HD'1sing1.09Å1.11Å
CD'HD'2sing1.09Å1.12Å
CE'OF'sing1.43Å1.43Å
CE'HE'1sing1.09Å1.11Å
CE'HE'2sing1.09Å1.11Å
OF'CG'sing1.43Å1.43Å
CG'CH'sing1.53Å1.43Å
CG'HG'1sing1.09Å1.11Å
CG'HG'2sing1.09Å1.11Å
CH'OI'sing1.43Å1.43Å
CH'HH'1sing1.09Å1.12Å
CH'HH'2sing1.09Å1.11Å
OI'CK'sing1.43Å1.43Å
CK'HK'1sing1.09Å1.11Å
CK'HK'2sing1.09Å1.12Å
CK'HK'3sing1.09Å1.12Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OP1POP2119.7°109.4°
OP1POP3106.3°109.5°
OP1PO5'108.5°109.4°
OP2POP3110.5°109.5°
OP2PO5'107.0°109.5°
POP2HOP2119.7°106.8°
OP3PO5'103.6°109.5°
POP3HOP3106.3°106.8°
PO5'C5'120.4°106.8°
O5'C5'C4'109.9°109.5°
O5'C5'H5'112.0°109.5°
O5'C5'H5''112.0°109.5°
C4'C5'H5'112.0°109.4°
C4'C5'H5''112.0°109.4°
C5'C4'O4'110.2°110.0°
C5'C4'C3'115.5°109.9°
C5'C4'H4'103.0°109.8°
H5'C5'H5''98.4°109.5°
O4'C4'C3'103.1°107.3°
O4'C4'H4'115.4°109.9°
C4'O4'C1'109.5°107.0°
C3'C4'H4'110.1°109.9°
C4'C3'O3'112.7°110.6°
C4'C3'C2'101.0°104.2°
C4'C3'H3'114.5°110.5°
O4'C1'C2'106.8°103.5°
O4'C1'N1108.9°110.6°
O4'C1'H1'112.3°110.6°
O3'C3'C2'113.5°110.4°
O3'C3'H3'102.2°110.4°
C3'O3'HO3'112.7°106.8°
C2'C3'H3'113.6°110.5°
C3'C2'O2'110.9°110.9°
C3'C2'C1'100.7°102.1°
C3'C2'H2'114.1°110.9°
O2'C2'C1'109.4°110.9°
O2'C2'H2'106.2°110.8°
C2'O2'CA'114.7°106.8°
C1'C2'H2'115.5°110.9°
C2'C1'N1111.6°110.8°
C2'C1'H1'109.7°110.7°
O2'CA'CB'109.7°109.5°
O2'CA'HA'1112.2°109.5°
O2'CA'HA'2112.1°109.5°
N1C1'H1'107.5°110.5°
C1'N1C2117.7°119.7°
C1'N1C6121.1°119.7°
C2N1C6121.2°120.6°
N1C2O2122.6°119.5°
N1C2N3114.9°121.0°
N1C6C5123.6°119.7°
N1C6H6119.9°120.2°
O2C2N3122.6°119.5°
C2N3C4127.0°120.2°
C2N3H3116.3°119.9°
C4N3H3116.7°119.8°
N3C4O4120.1°120.3°
N3C4C5115.2°119.4°
O4C4C5124.8°120.3°
C4C5C5M119.1°120.5°
C4C5C6118.1°119.1°
C5MC5C6122.8°120.5°
C5C5MH71119.1°109.5°
C5C5MH72108.7°109.5°
C5C5MH73108.7°109.5°
C5C6H6116.5°120.1°
H71C5MH72108.8°109.4°
H71C5MH73108.8°109.5°
H72C5MH73101.3°109.4°
CB'CA'HA'1112.1°109.5°
CB'CA'HA'2112.1°109.5°
CA'CB'OC'108.4°109.5°
CA'CB'HB'1112.6°109.5°
CA'CB'HB'2112.6°109.5°
HA'1CA'HA'298.2°109.5°
OC'CB'HB'1112.6°109.5°
OC'CB'HB'2112.6°109.5°
CB'OC'CD'111.9°106.8°
HB'1CB'HB'297.9°109.4°
OC'CD'CE'109.7°109.5°
OC'CD'HD'1112.1°109.4°
OC'CD'HD'2112.1°109.5°
CE'CD'HD'1112.1°109.5°
CE'CD'HD'2112.1°109.5°
CD'CE'OF'110.3°109.5°
CD'CE'HE'1111.9°109.5°
CD'CE'HE'2112.0°109.4°
HD'1CD'HD'298.3°109.5°
OF'CE'HE'1111.9°109.5°
OF'CE'HE'2111.8°109.5°
CE'OF'CG'111.7°106.8°
HE'1CE'HE'298.5°109.5°
OF'CG'CH'110.8°109.4°
OF'CG'HG'1111.7°109.5°
OF'CG'HG'2111.7°109.4°
CH'CG'HG'1111.7°109.5°
CH'CG'HG'2111.7°109.5°
CG'CH'OI'112.3°109.5°
CG'CH'HH'1111.2°109.5°
CG'CH'HH'2111.2°109.5°
HG'1CG'HG'298.7°109.5°
OI'CH'HH'1111.1°109.5°
OI'CH'HH'2111.2°109.4°
CH'OI'CK'111.2°106.8°
HH'1CH'HH'299.1°109.5°
OI'CK'HK'1111.2°109.5°
OI'CK'HK'2111.6°109.5°
OI'CK'HK'3111.6°109.4°
HK'1CK'HK'2111.5°109.5°
HK'1CK'HK'3111.6°109.5°
HK'2CK'HK'398.8°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OP1POP2OP3124.0°120.0°
OP1POP2O5'123.9°119.9°
OP1POP3O5'114.3°120.0°
OP1POP2HOP2180.0°60.0°
OP1POP3HOP3180.0°180.0°
OP1PO5'C5'47.4°60.0°
OP2POP3O5'114.3°120.0°
OP2POP3HOP348.7°60.0°
OP2PO5'C5'177.8°180.0°
OP3POP2HOP256.1°60.0°
OP3PO5'C5'65.4°60.0°
O5'POP2HOP256.1°180.0°
O5'POP3HOP365.7°60.0°
PO5'C5'C4'173.8°180.0°
PO5'C5'H5'61.0°60.0°
PO5'C5'H5''48.6°60.1°
O5'C5'C4'H5'125.3°120.0°
O5'C5'C4'H5''125.2°120.0°
O5'C5'H5'H5''118.0°120.0°
O5'C5'C4'O4'64.8°62.1°
O5'C5'C4'C3'51.5°180.0°
O5'C5'C4'H4'171.6°59.0°
C4'C5'H5'H5''117.9°120.0°
C5'C4'O4'C3'123.8°119.5°
C5'C4'O4'H4'116.1°121.1°
C5'C4'C3'H4'116.1°121.0°
C5'C4'O4'C1'147.7°146.0°
C5'C4'C3'O3'77.8°119.7°
C5'C4'C3'C2'160.8°121.6°
C5'C4'C3'H3'38.4°2.9°
H5'C5'C4'O4'170.0°177.9°
H5'C5'C4'C3'73.7°60.0°
H5'C5'C4'H4'46.3°61.0°
H5''C5'C4'O4'60.5°57.9°
H5''C5'C4'C3'176.8°60.0°
H5''C5'C4'H4'63.2°179.0°
O4'C4'C3'H4'123.6°119.4°
O4'C4'C3'O3'162.0°120.7°
O4'C4'C3'C2'40.6°2.0°
O4'C4'C3'H3'81.9°116.7°
C4'O4'C1'C2'2.8°40.1°
C4'O4'C1'N1117.9°158.7°
C4'O4'C1'H1'123.1°78.5°
C3'C4'O4'C1'23.9°26.5°
C4'C3'O3'C2'114.0°114.8°
C4'C3'O3'H3'123.3°122.7°
C4'C3'C2'H3'123.0°118.7°
C4'C3'O3'HO3'180.0°65.2°
C4'C3'C2'O2'74.4°139.1°
C4'C3'C2'C1'41.2°20.9°
C4'C3'C2'H2'165.7°97.3°
H4'C4'O4'C1'96.1°92.9°
H4'C4'C3'O3'38.3°1.3°
H4'C4'C3'C2'83.1°117.4°
H4'C4'C3'H3'154.5°123.9°
O4'C1'C2'C3'28.0°37.0°
O4'C1'C2'O2'88.8°155.2°
O4'C1'C2'N1119.0°118.6°
O4'C1'C2'H1'122.0°118.5°
O4'C1'C2'H2'151.5°81.2°
O4'C1'N1H1'122.0°122.9°
O4'C1'N1C2157.3°58.2°
O4'C1'N1C622.7°121.4°
O3'C3'C2'H3'116.1°122.5°
O3'C3'C2'O2'46.4°20.3°
O3'C3'C2'C1'162.1°98.0°
O3'C3'C2'H2'73.5°143.8°
C2'C3'O3'HO3'66.0°180.0°
C3'C2'O2'C1'110.2°112.7°
C3'C2'O2'H2'124.5°123.6°
C3'C2'C1'H2'123.5°118.2°
C3'C2'O2'CA'174.1°94.3°
C3'C2'C1'N190.9°155.5°
C3'C2'C1'H1'150.0°81.5°
H3'C3'O3'HO3'56.7°57.4°
H3'C3'C2'O2'162.5°102.2°
H3'C3'C2'C1'81.8°139.6°
H3'C3'C2'H2'42.6°21.4°
O2'C2'C1'H2'119.7°123.6°
O2'C2'C1'N1152.2°86.3°
O2'C2'C1'H1'33.1°36.6°
C2'O2'CA'CB'171.9°180.0°
C2'O2'CA'HA'162.7°60.0°
C2'O2'CA'HA'246.7°59.9°
C1'C2'O2'CA'63.9°153.0°
C2'C1'N1H1'120.3°123.0°
C2'C1'N1C285.0°55.9°
C2'C1'N1C695.0°124.4°
H2'C2'O2'CA'61.4°29.3°
H2'C2'C1'N132.5°37.4°
H2'C2'C1'H1'86.5°160.3°
O2'CA'CB'HA'1125.3°120.0°
O2'CA'CB'HA'2125.3°120.0°
O2'CA'HA'1HA'2118.0°120.0°
O2'CA'CB'OC'59.2°60.0°
O2'CA'CB'HB'166.1°60.0°
O2'CA'CB'HB'2175.6°180.0°
C1'N1C2C6180.0°179.6°
C1'N1C2O20.9°0.3°
C1'N1C2N3179.6°179.8°
C1'N1C6C5179.6°180.0°
C1'N1C6H60.4°0.1°
H1'C1'N1C235.3°178.9°
H1'C1'N1C6144.7°1.4°
N1C2O2N3179.5°179.6°
N1C2N3C40.5°0.5°
N1C2N3H3179.5°179.7°
C2N1C6C50.4°0.3°
C2N1C6H6179.6°179.8°
C6N1C2O2179.1°179.9°
C6N1C2N30.4°0.5°
N1C6C5C41.2°0.1°
N1C6C5C5M178.6°180.0°
N1C6C5H6180.0°179.9°
O2C2N3C4179.0°180.0°
O2C2N3H30.9°0.1°
C2N3C4H3179.9°179.8°
C2N3C4O4179.7°179.8°
C2N3C4C50.2°0.3°
N3C4O4C5179.9°179.9°
N3C4C5C5M178.8°180.0°
N3C4C5C61.0°0.1°
H3N3C4O40.3°0.0°
H3N3C4C5179.8°179.9°
O4C4C5C5M1.3°0.1°
O4C4C5C6178.9°180.0°
C4C5C5MC6179.8°179.9°
C4C5C5MH71180.0°0.1°
C4C5C5MH7254.7°120.1°
C4C5C5MH7354.7°119.9°
C4C5C6H6178.8°180.0°
C5C5MH71H72125.2°120.1°
C5C5MH71H73125.3°120.0°
C5C5MH72H73114.4°120.0°
C5MC5C6H61.4°0.1°
C6C5C5MH710.2°180.0°
C6C5C5MH72125.1°60.0°
C6C5C5MH73125.5°60.0°
H71C5MH72H73114.5°119.9°
CB'CA'HA'1HA'2118.0°120.0°
CA'CB'OC'HB'1125.3°120.0°
CA'CB'OC'HB'2125.2°120.0°
CA'CB'HB'1HB'2118.5°120.0°
CA'CB'OC'CD'165.1°180.0°
HA'1CA'CB'OC'175.5°180.0°
HA'1CA'CB'HB'159.3°60.0°
HA'1CA'CB'HB'250.2°60.0°
HA'2CA'CB'OC'66.1°60.0°
HA'2CA'CB'HB'1168.6°180.0°
HA'2CA'CB'HB'259.1°60.0°
OC'CB'HB'1HB'2118.5°120.0°
CB'OC'CD'CE'179.1°180.0°
CB'OC'CD'HD'153.8°60.0°
CB'OC'CD'HD'255.7°60.1°
HB'1CB'OC'CD'39.8°60.0°
HB'2CB'OC'CD'69.7°60.0°
OC'CD'CE'HD'1125.3°120.0°
OC'CD'CE'HD'2125.2°120.0°
OC'CD'HD'1HD'2118.0°120.0°
OC'CD'CE'OF'58.5°60.0°
OC'CD'CE'HE'166.7°60.0°
OC'CD'CE'HE'2176.3°180.0°
CE'CD'HD'1HD'2118.1°120.0°
CD'CE'OF'HE'1125.3°120.0°
CD'CE'OF'HE'2125.3°119.9°
CD'CE'HE'1HE'2117.9°119.9°
CD'CE'OF'CG'164.1°180.0°
HD'1CD'CE'OF'176.3°180.0°
HD'1CD'CE'HE'158.5°59.9°
HD'1CD'CE'HE'251.0°60.1°
HD'2CD'CE'OF'66.7°60.0°
HD'2CD'CE'HE'1168.0°180.0°
HD'2CD'CE'HE'258.5°60.0°
OF'CE'HE'1HE'2117.7°120.0°
CE'OF'CG'CH'158.5°180.0°
CE'OF'CG'HG'133.2°60.0°
CE'OF'CG'HG'276.3°60.0°
HE'1CE'OF'CG'38.8°60.0°
HE'2CE'OF'CG'70.6°60.1°
OF'CG'CH'HG'1125.3°120.1°
OF'CG'CH'HG'2125.3°119.9°
OF'CG'HG'1HG'2117.6°120.0°
OF'CG'CH'OI'63.3°60.0°
OF'CG'CH'HH'161.9°60.0°
OF'CG'CH'HH'2171.4°180.0°
CH'CG'HG'1HG'2117.6°120.0°
CG'CH'OI'HH'1125.3°120.0°
CG'CH'OI'HH'2125.3°120.0°
CG'CH'HH'1HH'2117.0°120.0°
CG'CH'OI'CK'153.7°180.0°
HG'1CG'CH'OI'171.4°179.9°
HG'1CG'CH'HH'163.3°60.0°
HG'1CG'CH'HH'246.1°60.0°
HG'2CG'CH'OI'61.9°59.9°
HG'2CG'CH'HH'1172.8°180.0°
HG'2CG'CH'HH'263.4°60.0°
OI'CH'HH'1HH'2117.1°119.9°
CH'OI'CK'HK'1180.0°180.0°
CH'OI'CK'HK'254.7°60.0°
CH'OI'CK'HK'354.7°60.0°
HH'1CH'OI'CK'28.4°60.0°
HH'2CH'OI'CK'81.0°60.0°
OI'CK'HK'1HK'2125.3°120.0°
OI'CK'HK'1HK'3125.3°120.0°
OI'CK'HK'2HK'3117.5°119.9°
HK'1CK'HK'2HK'3117.4°120.0°

223532

PDB entries from 2024-08-07

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