125
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP1 | doub | 1.48Å | 1.49Å | |
P | OP2 | sing | 1.61Å | 1.48Å | |
P | OP3 | sing | 1.61Å | 1.60Å | |
P | O5' | sing | 1.61Å | 1.59Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.43Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | H5' | sing | 1.09Å | 1.11Å | |
C5' | H5'' | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.44Å | 1.45Å | |
C4' | C3' | sing | 1.54Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.12Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
C3' | O3' | sing | 1.43Å | 1.41Å | |
C3' | C2' | sing | 1.55Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.43Å | 1.43Å | |
C2' | C1' | sing | 1.54Å | 1.53Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
O2' | CA' | sing | 1.43Å | 1.42Å | |
C1' | N1 | sing | 1.46Å | 1.48Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
N1 | C2 | sing | 1.35Å | 1.38Å | |
N1 | C6 | sing | 1.37Å | 1.38Å | |
C2 | O2 | doub | 1.22Å | 1.22Å | |
C2 | N3 | sing | 1.35Å | 1.37Å | |
N3 | C4 | sing | 1.35Å | 1.38Å | |
N3 | H3 | sing | 0.97Å | 1.02Å | |
C4 | O4 | doub | 1.22Å | 1.23Å | |
C4 | C5 | sing | 1.41Å | 1.45Å | |
C5 | C5M | sing | 1.51Å | 1.50Å | |
C5 | C6 | doub | 1.35Å | 1.34Å | |
C5M | H71 | sing | 1.09Å | 1.12Å | |
C5M | H72 | sing | 1.09Å | 1.11Å | |
C5M | H73 | sing | 1.09Å | 1.12Å | |
C6 | H6 | sing | 1.08Å | 1.10Å | |
CA' | CB' | sing | 1.53Å | 1.51Å | |
CA' | HA'1 | sing | 1.09Å | 1.12Å | |
CA' | HA'2 | sing | 1.09Å | 1.11Å | |
CB' | FC' | sing | 1.40Å | 1.39Å | |
CB' | HB'1 | sing | 1.09Å | 1.12Å | |
CB' | HB'2 | sing | 1.09Å | 1.12Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | OP2 | 119.7° | 109.5° |
OP1 | P | OP3 | 107.2° | 109.6° |
OP1 | P | O5' | 107.3° | 109.4° |
OP2 | P | OP3 | 109.3° | 109.4° |
OP2 | P | O5' | 109.0° | 109.4° |
P | OP2 | HOP2 | 119.7° | 106.8° |
OP3 | P | O5' | 103.0° | 109.5° |
P | OP3 | HOP3 | 107.3° | 106.9° |
P | O5' | C5' | 119.9° | 106.8° |
O5' | C5' | C4' | 110.7° | 109.5° |
O5' | C5' | H5' | 111.8° | 109.4° |
O5' | C5' | H5'' | 111.7° | 109.4° |
C4' | C5' | H5' | 111.7° | 109.5° |
C4' | C5' | H5'' | 111.7° | 109.5° |
C5' | C4' | O4' | 110.3° | 110.4° |
C5' | C4' | C3' | 116.4° | 110.5° |
C5' | C4' | H4' | 102.4° | 110.3° |
H5' | C5' | H5'' | 98.6° | 109.4° |
O4' | C4' | C3' | 103.7° | 104.8° |
O4' | C4' | H4' | 115.4° | 110.4° |
C4' | O4' | C1' | 109.5° | 105.3° |
C3' | C4' | H4' | 109.2° | 110.4° |
C4' | C3' | O3' | 113.3° | 110.6° |
C4' | C3' | C2' | 102.4° | 104.1° |
C4' | C3' | H3' | 112.6° | 110.5° |
O4' | C1' | C2' | 107.3° | 104.9° |
O4' | C1' | N1 | 108.9° | 110.4° |
O4' | C1' | H1' | 111.8° | 110.3° |
O3' | C3' | C2' | 112.0° | 110.5° |
O3' | C3' | H3' | 103.1° | 110.5° |
C3' | O3' | HO3' | 113.3° | 106.8° |
C2' | C3' | H3' | 113.9° | 110.5° |
C3' | C2' | O2' | 106.9° | 110.5° |
C3' | C2' | C1' | 100.9° | 104.0° |
C3' | C2' | H2' | 115.9° | 110.5° |
O2' | C2' | C1' | 108.2° | 110.8° |
O2' | C2' | H2' | 109.5° | 110.4° |
C2' | O2' | CA' | 117.0° | 106.9° |
C1' | C2' | H2' | 114.7° | 110.4° |
C2' | C1' | N1 | 111.2° | 110.4° |
C2' | C1' | H1' | 109.7° | 110.4° |
O2' | CA' | CB' | 107.4° | 109.5° |
O2' | CA' | HA'1 | 113.0° | 109.4° |
O2' | CA' | HA'2 | 113.0° | 109.5° |
N1 | C1' | H1' | 108.0° | 110.3° |
C1' | N1 | C2 | 117.9° | 119.7° |
C1' | N1 | C6 | 121.1° | 119.7° |
C2 | N1 | C6 | 120.9° | 120.6° |
N1 | C2 | O2 | 123.1° | 119.5° |
N1 | C2 | N3 | 114.9° | 120.9° |
N1 | C6 | C5 | 123.7° | 119.7° |
N1 | C6 | H6 | 119.6° | 120.2° |
O2 | C2 | N3 | 122.0° | 119.6° |
C2 | N3 | C4 | 127.2° | 120.3° |
C2 | N3 | H3 | 116.1° | 119.9° |
C4 | N3 | H3 | 116.7° | 119.9° |
N3 | C4 | O4 | 119.7° | 120.3° |
N3 | C4 | C5 | 115.2° | 119.4° |
O4 | C4 | C5 | 125.1° | 120.3° |
C4 | C5 | C5M | 118.9° | 120.5° |
C4 | C5 | C6 | 118.0° | 119.1° |
C5M | C5 | C6 | 123.1° | 120.4° |
C5 | C5M | H71 | 118.9° | 109.4° |
C5 | C5M | H72 | 108.8° | 109.5° |
C5 | C5M | H73 | 108.8° | 109.4° |
C5 | C6 | H6 | 116.7° | 120.1° |
H71 | C5M | H72 | 108.9° | 109.5° |
H71 | C5M | H73 | 108.8° | 109.5° |
H72 | C5M | H73 | 101.2° | 109.5° |
CB' | CA' | HA'1 | 113.0° | 109.5° |
CB' | CA' | HA'2 | 113.0° | 109.5° |
CA' | CB' | FC' | 111.0° | 109.4° |
CA' | CB' | HB'1 | 111.6° | 109.5° |
CA' | CB' | HB'2 | 111.6° | 109.5° |
HA'1 | CA' | HA'2 | 97.4° | 109.4° |
FC' | CB' | HB'1 | 111.7° | 109.4° |
FC' | CB' | HB'2 | 111.7° | 109.5° |
HB'1 | CB' | HB'2 | 98.7° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | OP2 | OP3 | 124.1° | 120.1° |
OP1 | P | OP2 | O5' | 123.9° | 120.0° |
OP1 | P | OP3 | O5' | 113.0° | 120.0° |
OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
OP1 | P | OP3 | HOP3 | 180.0° | 180.0° |
OP1 | P | O5' | C5' | 48.9° | 60.0° |
OP2 | P | OP3 | O5' | 115.8° | 119.9° |
OP2 | P | OP3 | HOP3 | 48.8° | 60.0° |
OP2 | P | O5' | C5' | 179.9° | 180.0° |
OP3 | P | OP2 | HOP2 | 55.8° | 60.1° |
OP3 | P | O5' | C5' | 64.1° | 60.1° |
O5' | P | OP2 | HOP2 | 56.1° | 180.0° |
O5' | P | OP3 | HOP3 | 67.0° | 59.9° |
P | O5' | C5' | C4' | 175.2° | 180.0° |
P | O5' | C5' | H5' | 59.5° | 59.9° |
P | O5' | C5' | H5'' | 49.9° | 60.0° |
O5' | C5' | C4' | H5' | 125.3° | 120.0° |
O5' | C5' | C4' | H5'' | 125.3° | 120.0° |
O5' | C5' | H5' | H5'' | 117.6° | 119.9° |
O5' | C5' | C4' | O4' | 67.6° | 61.4° |
O5' | C5' | C4' | C3' | 50.1° | 176.9° |
O5' | C5' | C4' | H4' | 169.1° | 60.8° |
C4' | C5' | H5' | H5'' | 117.6° | 120.0° |
C5' | C4' | O4' | C3' | 125.3° | 119.0° |
C5' | C4' | O4' | H4' | 115.4° | 122.2° |
C5' | C4' | C3' | H4' | 115.2° | 122.2° |
C5' | C4' | O4' | C1' | 147.7° | 159.5° |
C5' | C4' | C3' | O3' | 79.9° | 98.3° |
C5' | C4' | C3' | C2' | 159.3° | 143.0° |
C5' | C4' | C3' | H3' | 36.6° | 24.3° |
H5' | C5' | C4' | O4' | 167.1° | 178.5° |
H5' | C5' | C4' | C3' | 75.2° | 63.1° |
H5' | C5' | C4' | H4' | 43.8° | 59.2° |
H5'' | C5' | C4' | O4' | 57.6° | 58.6° |
H5'' | C5' | C4' | C3' | 175.4° | 56.9° |
H5'' | C5' | C4' | H4' | 65.6° | 179.2° |
O4' | C4' | C3' | H4' | 123.5° | 118.9° |
O4' | C4' | C3' | O3' | 158.8° | 142.8° |
O4' | C4' | C3' | C2' | 38.0° | 24.1° |
O4' | C4' | C3' | H3' | 84.7° | 94.6° |
C4' | O4' | C1' | C2' | 2.2° | 40.4° |
C4' | O4' | C1' | N1 | 118.3° | 159.4° |
C4' | O4' | C1' | H1' | 122.5° | 78.5° |
C3' | C4' | O4' | C1' | 22.4° | 40.5° |
C4' | C3' | O3' | C2' | 115.2° | 114.7° |
C4' | C3' | O3' | H3' | 122.0° | 122.6° |
C4' | C3' | C2' | H3' | 121.8° | 118.6° |
C4' | C3' | O3' | HO3' | 180.0° | 61.4° |
C4' | C3' | C2' | O2' | 74.8° | 118.9° |
C4' | C3' | C2' | C1' | 38.2° | 0.1° |
C4' | C3' | C2' | H2' | 162.8° | 118.6° |
H4' | C4' | O4' | C1' | 96.9° | 78.4° |
H4' | C4' | C3' | O3' | 35.3° | 23.9° |
H4' | C4' | C3' | C2' | 85.5° | 94.8° |
H4' | C4' | C3' | H3' | 151.8° | 146.5° |
O4' | C1' | C2' | C3' | 25.6° | 23.8° |
O4' | C1' | C2' | O2' | 86.4° | 142.6° |
O4' | C1' | C2' | N1 | 119.1° | 119.0° |
O4' | C1' | C2' | H1' | 121.6° | 118.8° |
O4' | C1' | C2' | H2' | 151.0° | 94.7° |
O4' | C1' | N1 | H1' | 121.6° | 122.2° |
O4' | C1' | N1 | C2 | 153.0° | 57.1° |
O4' | C1' | N1 | C6 | 27.6° | 122.9° |
O3' | C3' | C2' | H3' | 116.5° | 122.6° |
O3' | C3' | C2' | O2' | 46.9° | 0.1° |
O3' | C3' | C2' | C1' | 159.9° | 118.9° |
O3' | C3' | C2' | H2' | 75.5° | 122.6° |
C2' | C3' | O3' | HO3' | 64.8° | 176.1° |
C3' | C2' | O2' | C1' | 108.0° | 114.8° |
C3' | C2' | O2' | H2' | 126.3° | 122.6° |
C3' | C2' | C1' | H2' | 125.4° | 118.5° |
C3' | C2' | O2' | CA' | 178.8° | 91.4° |
C3' | C2' | C1' | N1 | 93.4° | 142.8° |
C3' | C2' | C1' | H1' | 147.2° | 95.0° |
H3' | C3' | O3' | HO3' | 58.1° | 61.2° |
H3' | C3' | C2' | O2' | 163.4° | 122.5° |
H3' | C3' | C2' | C1' | 83.6° | 118.5° |
H3' | C3' | C2' | H2' | 41.0° | 0.0° |
O2' | C2' | C1' | H2' | 122.6° | 122.7° |
O2' | C2' | C1' | N1 | 154.6° | 98.5° |
O2' | C2' | C1' | H1' | 35.2° | 23.8° |
C2' | O2' | CA' | CB' | 176.2° | 180.0° |
C2' | O2' | CA' | HA'1 | 58.6° | 60.0° |
C2' | O2' | CA' | HA'2 | 50.9° | 59.9° |
C1' | C2' | O2' | CA' | 70.9° | 153.8° |
C2' | C1' | N1 | H1' | 120.3° | 122.3° |
C2' | C1' | N1 | C2 | 89.0° | 58.5° |
C2' | C1' | N1 | C6 | 90.4° | 121.5° |
H2' | C2' | O2' | CA' | 54.8° | 31.1° |
H2' | C2' | C1' | N1 | 32.0° | 24.2° |
H2' | C2' | C1' | H1' | 87.4° | 146.4° |
O2' | CA' | CB' | HA'1 | 125.3° | 120.0° |
O2' | CA' | CB' | HA'2 | 125.3° | 120.0° |
O2' | CA' | HA'1 | HA'2 | 119.0° | 119.9° |
O2' | CA' | CB' | FC' | 53.1° | 60.0° |
O2' | CA' | CB' | HB'1 | 72.2° | 180.0° |
O2' | CA' | CB' | HB'2 | 178.4° | 60.0° |
C1' | N1 | C2 | C6 | 179.4° | 180.0° |
C1' | N1 | C2 | O2 | 0.3° | 0.0° |
C1' | N1 | C2 | N3 | 179.2° | 180.0° |
C1' | N1 | C6 | C5 | 178.5° | 180.0° |
C1' | N1 | C6 | H6 | 1.5° | 0.1° |
H1' | C1' | N1 | C2 | 31.4° | 179.3° |
H1' | C1' | N1 | C6 | 149.2° | 0.8° |
N1 | C2 | O2 | N3 | 179.5° | 180.0° |
N1 | C2 | N3 | C4 | 0.5° | 0.2° |
N1 | C2 | N3 | H3 | 179.5° | 179.9° |
C2 | N1 | C6 | C5 | 0.8° | 0.1° |
C2 | N1 | C6 | H6 | 179.2° | 180.0° |
C6 | N1 | C2 | O2 | 179.7° | 180.0° |
C6 | N1 | C2 | N3 | 0.2° | 0.0° |
N1 | C6 | C5 | C4 | 0.8° | 0.3° |
N1 | C6 | C5 | C5M | 179.0° | 180.0° |
N1 | C6 | C5 | H6 | 180.0° | 179.9° |
O2 | C2 | N3 | C4 | 179.1° | 179.8° |
O2 | C2 | N3 | H3 | 0.9° | 0.1° |
C2 | N3 | C4 | H3 | 180.0° | 179.9° |
C2 | N3 | C4 | O4 | 179.3° | 179.9° |
C2 | N3 | C4 | C5 | 0.4° | 0.4° |
N3 | C4 | O4 | C5 | 179.7° | 179.5° |
N3 | C4 | C5 | C5M | 179.6° | 179.9° |
N3 | C4 | C5 | C6 | 0.2° | 0.5° |
H3 | N3 | C4 | O4 | 0.7° | 0.2° |
H3 | N3 | C4 | C5 | 179.6° | 179.7° |
O4 | C4 | C5 | C5M | 0.1° | 0.4° |
O4 | C4 | C5 | C6 | 179.9° | 180.0° |
C4 | C5 | C5M | C6 | 179.8° | 179.6° |
C4 | C5 | C5M | H71 | 179.9° | 0.3° |
C4 | C5 | C5M | H72 | 54.7° | 119.7° |
C4 | C5 | C5M | H73 | 54.8° | 120.3° |
C4 | C5 | C6 | H6 | 179.2° | 179.8° |
C5 | C5M | H71 | H72 | 125.3° | 120.0° |
C5 | C5M | H71 | H73 | 125.2° | 119.9° |
C5 | C5M | H72 | H73 | 114.5° | 120.0° |
C5M | C5 | C6 | H6 | 1.0° | 0.2° |
C6 | C5 | C5M | H71 | 0.3° | 180.0° |
C6 | C5 | C5M | H72 | 125.1° | 59.9° |
C6 | C5 | C5M | H73 | 125.4° | 60.1° |
H71 | C5M | H72 | H73 | 114.5° | 120.0° |
CB' | CA' | HA'1 | HA'2 | 118.9° | 120.0° |
CA' | CB' | FC' | HB'1 | 125.3° | 119.9° |
CA' | CB' | FC' | HB'2 | 125.3° | 120.0° |
CA' | CB' | HB'1 | HB'2 | 117.5° | 120.0° |
HA'1 | CA' | CB' | FC' | 178.3° | 60.0° |
HA'1 | CA' | CB' | HB'1 | 53.0° | 60.0° |
HA'1 | CA' | CB' | HB'2 | 56.4° | 180.0° |
HA'2 | CA' | CB' | FC' | 72.2° | 179.9° |
HA'2 | CA' | CB' | HB'1 | 162.5° | 60.0° |
HA'2 | CA' | CB' | HB'2 | 53.1° | 60.0° |
FC' | CB' | HB'1 | HB'2 | 117.6° | 120.1° |