Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

0WD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C5NC4Nsing1.50Å1.41Å
C5NC6Ndoub1.31Å1.38Å
C4NC3Nsing1.50Å1.40Å
O7NC7Ndoub1.22Å1.22Å
C6NN1Nsing1.39Å1.36Å
C3NC7Nsing1.41Å1.51Å
C3NC2Ndoub1.35Å1.40Å
C7NN7Nsing1.35Å1.33Å
N1NC2Nsing1.37Å1.35Å
N1NC1Msing1.47Å1.47Å
C1MO4Msing1.44Å1.43Å
C1MC2Msing1.54Å1.52Å
O4MC4Msing1.44Å1.43Å
C2MO2Msing1.43Å1.40Å
C2MC3Msing1.55Å1.52Å
C4MC5Msing1.53Å1.53Å
C4MC3Msing1.54Å1.51Å
O2NPNdoub1.48Å1.50Å
O1NPNsing1.61Å1.52Å
O5MC5Msing1.43Å1.42Å
O5MPNsing1.61Å1.61Å
O3MC3Msing1.43Å1.42Å
PNO3Psing1.61Å1.61Å
O3PPAsing1.61Å1.61Å
O1APAdoub1.48Å1.51Å
PAO5Bsing1.61Å1.60Å
PAO2Asing1.61Å1.50Å
O5BC5Bsing1.43Å1.42Å
C5BC4Bsing1.53Å1.51Å
C4BO4Bsing1.44Å1.44Å
C4BC3Bsing1.54Å1.52Å
O4BC1Bsing1.44Å1.43Å
C3BO3Bsing1.43Å1.43Å
C3BC2Bsing1.55Å1.51Å
O3BP2'sing1.61Å1.62Å
C1BC2Bsing1.55Å1.52Å
C1BN9Asing1.46Å1.48Å
OP3P2'doub1.48Å1.52Å
C2BO2Bsing1.43Å1.42Å
P2'OP1sing1.61Å1.51Å
P2'OP2sing1.61Å1.51Å
N9AC8Asing1.36Å1.36ÅAromatic
N9AC4Asing1.37Å1.32ÅAromatic
C8AN7Adoub1.30Å1.37ÅAromatic
C4AN3Adoub1.33Å1.45ÅAromatic
C4AC5Asing1.41Å1.45ÅAromatic
N7AC5Asing1.35Å1.35ÅAromatic
N3AC2Asing1.32Å1.35ÅAromatic
C5AC6Adoub1.41Å1.48ÅAromatic
C2AN1Adoub1.32Å1.35ÅAromatic
C6AN1Asing1.33Å1.37ÅAromatic
C6AN6Asing1.38Å1.35Å
N7NH1sing0.97Å1.00Å
N7NH2sing0.97Å1.00Å
C2NH3sing1.08Å1.08Å
C4NH4sing1.09Å1.10Å
C5NH5sing1.08Å1.08Å
C6NH6sing1.08Å1.08Å
C1MH7sing1.09Å1.10Å
C2MH8sing1.09Å1.10Å
O2MH9sing0.97Å0.95Å
C3MH10sing1.09Å1.10Å
O3MH11sing0.97Å0.95Å
C4MH12sing1.09Å1.10Å
C5MH13sing1.09Å1.10Å
C5MH14sing1.09Å1.10Å
O1NH15sing0.97Å0.95Å
O2AH16sing0.97Å0.95Å
C5BH17sing1.09Å1.10Å
C5BH18sing1.09Å1.10Å
C4BH19sing1.09Å1.10Å
C3BH20sing1.09Å1.10Å
OP2H21sing0.97Å0.95Å
OP1H22sing0.97Å0.95Å
C1BH23sing1.09Å1.10Å
C2BH24sing1.09Å1.10Å
O2BH25sing0.97Å0.95Å
C2AH26sing1.08Å1.08Å
N6AH27sing0.97Å1.00Å
N6AH28sing0.97Å1.00Å
C8AH29sing1.08Å1.08Å
C4NH30sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C4NC5NC6N119.5°121.8°
C5NC4NC3N118.0°110.9°
C5NC4NH4107.3°109.2°
C4NC5NH5120.3°119.1°
C5NC4NH30107.3°109.1°
C5NC6NN1N121.4°121.0°
C6NC5NH5120.2°119.1°
C5NC6NH6119.3°119.5°
C4NC3NC7N120.4°119.3°
C4NC3NC2N120.2°121.3°
C3NC4NH4107.3°109.2°
C3NC4NH30107.3°109.2°
O7NC7NC3N118.6°120.0°
O7NC7NN7N121.4°120.0°
C6NN1NC2N120.9°120.1°
C6NN1NC1M117.2°120.0°
N1NC6NH6119.3°119.5°
C7NC3NC2N119.4°119.4°
C3NC7NN7N119.9°120.0°
C3NC2NN1N120.0°120.5°
C3NC2NH3120.1°119.7°
C7NN7NH1120.0°120.0°
C7NN7NH2120.0°120.0°
C2NN1NC1M121.8°119.9°
N1NC2NH3120.0°119.8°
N1NC1MO4M106.9°110.3°
N1NC1MC2M121.0°110.3°
N1NC1MH7108.9°110.3°
O4MC1MC2M102.0°104.8°
C1MO4MC4M112.2°105.2°
O4MC1MH7109.4°110.4°
C1MC2MO2M112.2°110.5°
C1MC2MC3M102.3°104.1°
C2MC1MH7108.2°110.5°
C1MC2MH8109.7°110.5°
O4MC4MC5M111.5°110.3°
O4MC4MC3M105.0°104.8°
O4MC4MH12110.0°110.4°
O2MC2MC3M110.9°110.5°
O2MC2MH8111.5°110.5°
C2MO2MH9109.5°114.0°
C2MC3MC4M104.2°104.1°
C2MC3MO3M113.6°110.5°
C3MC2MH8109.7°110.6°
C2MC3MH10110.5°110.5°
C5MC4MC3M112.8°110.4°
C4MC5MO5M107.9°109.5°
C5MC4MH12108.6°110.3°
C4MC5MH13109.8°109.4°
C4MC5MH14109.9°109.5°
C4MC3MO3M105.3°110.6°
C4MC3MH10110.8°110.5°
C3MC4MH12108.9°110.5°
O2NPNO1N121.1°109.5°
O2NPNO5M100.3°109.5°
O2NPNO3P111.7°109.4°
O1NPNO5M109.4°109.5°
O1NPNO3P113.0°109.5°
PNO1NH15109.5°114.1°
C5MO5MPN124.3°123.0°
O5MC5MH13109.9°109.5°
O5MC5MH14109.9°109.4°
O5MPNO3P97.8°109.4°
O3MC3MH10112.0°110.5°
C3MO3MH11109.5°114.0°
PNO3PPA127.5°134.0°
O3PPAO1A109.9°109.5°
O3PPAO5B100.4°109.5°
O3PPAO2A107.6°109.4°
O1APAO5B111.1°109.5°
O1APAO2A121.6°109.5°
O5BPAO2A104.0°109.5°
PAO5BC5B118.4°123.0°
PAO2AH16109.5°114.0°
O5BC5BC4B110.1°109.5°
O5BC5BH17109.3°109.5°
O5BC5BH18109.3°109.4°
C5BC4BO4B111.7°109.9°
C5BC4BC3B112.3°109.9°
C4BC5BH17109.3°109.5°
C4BC5BH18109.3°109.5°
C5BC4BH19108.3°109.9°
O4BC4BC3B106.9°107.3°
C4BO4BC1B106.6°107.0°
O4BC4BH19109.3°109.9°
C4BC3BO3B103.9°110.5°
C4BC3BC2B99.8°104.2°
C3BC4BH19108.2°110.0°
C4BC3BH20112.6°110.4°
O4BC1BC2B100.4°103.4°
O4BC1BN9A118.3°110.7°
O4BC1BH23110.3°110.6°
O3BC3BC2B112.2°110.5°
C3BO3BP2'128.9°123.0°
O3BC3BH20114.2°110.4°
C3BC2BC1B99.3°102.1°
C3BC2BO2B115.6°110.9°
C2BC3BH20112.8°110.6°
C3BC2BH24108.6°110.9°
O3BP2'OP3100.6°109.5°
O3BP2'OP1104.6°109.5°
O3BP2'OP2108.0°109.5°
C2BC1BN9A108.5°110.7°
C1BC2BO2B114.5°110.9°
C2BC1BH23109.1°110.6°
C1BC2BH24108.4°110.9°
C1BN9AC8A128.5°126.3°
C1BN9AC4A125.7°126.3°
N9AC1BH23109.7°110.7°
OP3P2'OP1118.0°109.5°
OP3P2'OP2111.3°109.4°
O2BC2BH24109.8°110.8°
C2BO2BH25109.5°114.0°
OP1P2'OP2112.8°109.5°
P2'OP1H22109.5°114.0°
P2'OP2H21109.5°114.1°
C8AN9AC4A105.7°107.4°
N9AC8AN7A112.3°110.0°
N9AC8AH29123.9°125.0°
N9AC4AN3A128.9°134.9°
N9AC4AC5A109.5°106.0°
C8AN7AC5A106.4°109.4°
N7AC8AH29123.9°125.0°
N3AC4AC5A121.6°119.1°
C4AN3AC2A119.1°120.7°
C4AC5AN7A106.1°107.2°
C4AC5AC6A114.0°118.1°
N7AC5AC6A139.9°134.7°
N3AC2AN1A121.6°122.4°
N3AC2AH26119.2°118.8°
C5AC6AN1A120.3°118.5°
C5AC6AN6A118.8°120.7°
C2AN1AC6A123.5°121.2°
N1AC2AH26119.2°118.8°
N1AC6AN6A121.0°120.8°
C6AN6AH27109.5°120.0°
C6AN6AH28109.5°120.0°
H1N7NH2120.0°120.0°
H4C4NH30109.5°109.3°
H13C5MH14109.5°109.5°
H17C5BH18109.5°109.4°
H27N6AH28109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C4NC5NC6NH5180.0°180.0°
C5NC4NC3NH4121.2°120.3°
C5NC4NC3NH30121.2°120.3°
C4NC5NC6NN1N1.2°0.5°
C5NC4NC3NC7N177.3°163.8°
C5NC4NC3NC2N0.8°16.0°
C5NC4NH4H30116.1°119.3°
C4NC5NC6NH6178.8°179.7°
C6NC5NC4NC3N1.1°16.1°
C5NC6NN1NH6180.0°179.8°
C5NC6NN1NC2N1.1°17.5°
C5NC6NN1NC1M177.8°162.2°
C6NC5NC4NH4122.3°136.4°
C6NC5NC4NH30120.1°104.2°
C4NC3NC7NO7N25.3°179.7°
C4NC3NC7NC2N178.2°179.8°
C4NC3NC7NN7N157.7°0.5°
C4NC3NC2NN1N0.7°0.2°
C4NC3NC2NH3179.3°179.8°
C3NC4NH4H30116.1°119.4°
C3NC4NC5NH5178.9°163.8°
O7NC7NC3NN7N177.0°179.8°
O7NC7NC3NC2N152.8°0.1°
O7NC7NN7NH10.0°0.0°
O7NC7NN7NH2180.0°180.0°
C6NN1NC2NC3N0.8°17.5°
C6NN1NC2NC1M176.6°179.7°
C6NN1NC1MO4M107.0°53.5°
C6NN1NC1MC2M137.2°61.8°
C6NN1NC2NH3179.2°162.5°
N1NC6NC5NH5178.8°179.5°
C6NN1NC1MH711.1°175.8°
C7NC3NC2NN1N177.5°179.6°
C3NC7NN7NH1176.9°179.8°
C3NC7NN7NH23.2°0.2°
C7NC3NC2NH32.5°0.4°
C7NC3NC4NH456.1°43.5°
C7NC3NC4NH3061.5°75.9°
C2NC3NC7NN7N24.1°179.7°
C3NC2NN1NH3180.0°180.0°
C3NC2NN1NC1M177.3°162.2°
C2NC3NC4NH4122.1°136.3°
C2NC3NC4NH30120.4°104.3°
C7NN7NH1H2180.0°180.0°
C2NN1NC1MO4M69.7°126.2°
C2NN1NC1MC2M46.1°118.5°
C2NN1NC6NH6179.0°162.3°
C2NN1NC1MH7172.2°3.9°
N1NC1MO4MC2M127.9°118.8°
N1NC1MO4MH7117.7°122.2°
N1NC1MC2MH7126.4°122.3°
N1NC1MO4MC4M155.9°159.3°
N1NC1MC2MO2M85.8°98.6°
N1NC1MC2MC3M155.2°142.8°
C1MN1NC2NH32.7°17.8°
C1MN1NC6NH62.2°18.0°
N1NC1MC2MH838.8°24.0°
O4MC1MC2MH7115.3°119.0°
O4MC1MC2MO2M155.9°142.6°
O4MC1MC2MC3M36.9°24.0°
C1MO4MC4MC5M129.3°159.4°
C1MO4MC4MC3M6.9°40.6°
O4MC1MC2MH879.5°94.8°
C1MO4MC4MH12110.1°78.4°
C2MC1MO4MC4M28.0°40.6°
C1MC2MO2MC3M113.8°114.6°
C1MC2MO2MH8123.6°122.6°
C1MC2MC3MH8116.5°118.7°
C1MC2MC3MC4M33.5°0.0°
C1MC2MC3MO3M80.6°118.7°
C1MC2MO2MH9180.0°179.9°
C1MC2MC3MH10152.5°118.7°
O4MC4MC3MC2M17.3°24.0°
O4MC4MC5MC3M117.9°115.3°
O4MC4MC5MH12121.3°122.2°
O4MC4MC3MH12117.7°118.9°
O4MC4MC5MO5M44.6°66.5°
O4MC4MC3MO3M102.5°142.7°
C4MO4MC1MH786.4°78.4°
O4MC4MC3MH10136.2°94.6°
O4MC4MC5MH1375.2°173.5°
O4MC4MC5MH14164.3°53.5°
O2MC2MC3MH8123.7°122.7°
O2MC2MC3MC4M153.4°118.6°
O2MC2MC3MO3M39.3°0.1°
O2MC2MC1MH740.6°23.7°
O2MC2MC3MH1087.6°122.7°
C2MC3MC4MC5M104.3°142.8°
C2MC3MC4MO3M119.8°118.7°
C2MC3MC4MH10118.9°118.7°
C2MC3MO3MH10126.1°122.6°
C3MC2MC1MH778.4°94.9°
C3MC2MO2MH966.2°65.3°
C2MC3MO3MH11180.0°61.5°
C2MC3MC4MH12135.1°94.9°
C5MC4MC3MH12120.6°122.3°
C4MC5MO5MH13119.7°120.0°
C4MC5MO5MH14119.8°120.0°
C4MC5MO5MPN167.3°180.0°
C5MC4MC3MO3M135.9°98.5°
C5MC4MC3MH1014.6°24.1°
C4MC5MH13H14120.7°120.0°
C3MC4MC5MO5M73.4°178.2°
C4MC3MO3MH10120.5°122.7°
C4MC3MC2MH883.0°118.7°
C4MC3MO3MH1166.6°176.2°
C3MC4MC5MH13166.9°58.2°
C3MC4MC5MH1446.4°61.8°
O2NPNO1NO5M115.8°120.1°
O2NPNO1NO3P136.4°120.0°
O2NPNO5MC5M168.5°55.0°
O2NPNO5MO3P113.8°120.0°
O2NPNO3PPA97.7°45.1°
O2NPNO1NH150.0°180.0°
O1NPNO5MC5M40.1°65.1°
O1NPNO5MO3P117.7°120.0°
O1NPNO3PPA42.9°75.0°
C5MO5MPNO3P77.7°175.0°
O5MC5MC4MH12165.9°55.8°
O5MC5MH13H14120.7°120.0°
O5MPNO3PPA157.9°165.1°
PNO5MC5MH1347.5°60.0°
PNO5MC5MH1473.0°60.0°
O5MPNO1NH15115.8°60.0°
O3MC3MC2MH8163.0°122.5°
O3MC3MC4MH1215.3°23.8°
PNO3PPAO1A0.3°45.0°
PNO3PPAO5B117.5°165.0°
PNO3PPAO2A134.1°75.0°
O3PPNO1NH15136.5°60.0°
O3PPAO1AO5B110.2°120.0°
O3PPAO1AO2A126.9°120.0°
O3PPAO5BO2A111.2°119.9°
O3PPAO5BC5B70.8°175.0°
O3PPAO2AH16128.0°60.0°
O1APAO5BO2A132.5°120.0°
O1APAO5BC5B172.9°55.0°
O1APAO2AH160.0°180.0°
PAO5BC5BC4B174.4°180.0°
O5BPAO2AH16126.2°60.0°
PAO5BC5BH1765.5°60.0°
PAO5BC5BH1854.3°60.0°
O2APAO5BC5B40.4°65.0°
O5BC5BC4BH17120.1°120.0°
O5BC5BC4BH18120.1°120.0°
O5BC5BC4BO4B156.6°66.5°
O5BC5BC4BC3B83.3°175.7°
O5BC5BH17H18119.7°119.9°
O5BC5BC4BH1936.2°54.6°
C5BC4BO4BC3B123.2°119.4°
C5BC4BO4BH19119.9°121.0°
C5BC4BC3BH19119.5°121.1°
C5BC4BO4BC1B133.6°145.9°
C5BC4BC3BO3B143.0°119.8°
C5BC4BC3BC2B101.0°121.4°
C4BC5BH17H18119.7°120.0°
C5BC4BC3BH2018.9°2.6°
O4BC4BC3BH19117.6°119.5°
O4BC4BC3BO3B94.1°120.7°
O4BC4BC3BC2B21.9°2.0°
C4BO4BC1BC2B38.2°40.0°
C4BO4BC1BN9A156.0°158.6°
O4BC4BC5BH1736.6°53.6°
O4BC4BC5BH1883.3°173.5°
O4BC4BC3BH20141.8°116.8°
C4BO4BC1BH2376.8°78.4°
C3BC4BO4BC1B10.4°26.5°
C4BC3BO3BC2B106.9°114.8°
C4BC3BO3BH20123.1°122.5°
C4BC3BC2BH20119.8°118.7°
C4BC3BO3BP2'167.1°120.0°
C4BC3BC2BC1B43.6°20.9°
C4BC3BC2BO2B166.6°139.1°
C3BC4BC5BH17156.7°64.3°
C3BC4BC5BH1836.8°55.7°
C4BC3BC2BH2469.5°97.3°
O4BC1BC2BC3B51.4°37.0°
O4BC1BC2BN9A124.7°118.5°
O4BC1BC2BH23115.9°118.4°
O4BC1BN9AH23127.6°123.0°
O4BC1BC2BO2B175.1°155.2°
O4BC1BN9AC8A51.1°23.5°
O4BC1BN9AC4A132.4°156.2°
C1BO4BC4BH19106.5°93.1°
O4BC1BC2BH2461.9°81.3°
O3BC3BC2BH20130.8°122.6°
O3BC3BC2BC1B65.8°97.8°
C3BO3BP2'OP3179.8°55.0°
O3BC3BC2BO2B57.1°20.4°
C3BO3BP2'OP157.0°65.0°
C3BO3BP2'OP263.5°175.0°
O3BC3BC4BH1923.5°1.2°
O3BC3BC2BH24179.0°144.0°
C2BC3BO3BP2'60.2°125.2°
C3BC2BC1BO2B123.7°118.2°
C3BC2BC1BH24113.3°118.3°
C3BC2BC1BN9A176.1°155.5°
C3BC2BO2BH24123.3°123.6°
C2BC3BC4BH19139.5°117.5°
C3BC2BC1BH2364.5°81.4°
C3BC2BO2BH25180.0°180.0°
O3BP2'OP3OP1113.0°120.0°
O3BP2'OP3OP2114.3°120.0°
O3BP2'OP1OP2117.2°120.0°
P2'O3BC3BH2069.8°2.5°
O3BP2'OP2H21109.6°180.0°
O3BP2'OP1H22110.7°60.0°
C2BC1BN9AH23119.0°123.0°
C1BC2BO2BH24122.2°123.6°
C2BC1BN9AC8A62.3°90.5°
C2BC1BN9AC4A114.2°89.7°
C1BC2BC3BH20163.4°139.6°
C1BC2BO2BH2565.5°67.3°
N9AC1BC2BO2B60.2°86.3°
C1BN9AC8AC4A177.0°179.8°
C1BN9AC8AN7A178.3°179.8°
C1BN9AC4AN3A3.0°0.1°
C1BN9AC4AC5A178.6°180.0°
N9AC1BC2BH2462.8°37.3°
C1BN9AC8AH291.7°0.1°
OP3P2'OP1OP2132.1°120.0°
OP3P2'OP2H210.0°60.0°
OP3P2'OP1H220.0°179.9°
O2BC2BC3BH2073.7°102.2°
O2BC2BC1BH2359.2°36.8°
OP1P2'OP2H21135.3°60.0°
OP2P2'OP1H22132.1°60.0°
N9AC8AN7AH29180.0°179.8°
C8AN9AC4AN3A179.8°179.7°
C8AN9AC4AC5A1.5°0.2°
N9AC8AN7AC5A0.4°0.4°
C8AN9AC1BH23178.7°146.5°
C4AN9AC8AN7A1.2°0.4°
N9AC4AN3AC5A178.2°179.9°
N9AC4AC5AN7A1.3°0.1°
N9AC4AN3AC2A179.0°179.9°
N9AC4AC5AC6A179.7°180.0°
C4AN9AC1BH234.8°33.2°
C4AN9AC8AH29178.8°179.8°
C8AN7AC5AC4A0.5°0.3°
C8AN7AC5AC6A179.2°179.7°
N3AC4AC5AN7A179.8°180.0°
N3AC4AC5AC6A1.2°0.1°
C4AN3AC2AN1A0.2°0.0°
C4AN3AC2AH26179.8°179.9°
C4AC5AN7AC6A178.7°180.0°
C5AC4AN3AC2A0.8°0.0°
C4AC5AC6AN1A0.6°0.0°
C4AC5AC6AN6A179.0°179.9°
N7AC5AC6AN1A179.2°180.0°
N7AC5AC6AN6A0.4°0.0°
C5AN7AC8AH29179.6°179.8°
N3AC2AN1AH26180.0°179.9°
N3AC2AN1AC6A0.8°0.1°
C5AC6AN1AC2A0.4°0.1°
C5AC6AN1AN6A179.6°180.0°
C5AC6AN6AH27179.6°0.0°
C5AC6AN6AH2860.4°179.9°
C2AN1AC6AN6A180.0°180.0°
C6AN1AC2AH26179.2°180.0°
N1AC6AN6AH270.0°180.0°
N1AC6AN6AH28120.0°0.1°
C6AN6AH27H28120.0°179.9°
H4C4NC5NH557.7°43.5°
H5C5NC6NH61.2°0.4°
H5C5NC4NH3059.9°75.8°
H7C1MC2MH8165.2°146.3°
H8C2MO2MH956.4°57.4°
H8C2MC3MH1036.1°0.1°
H10C3MO3MH1153.9°61.1°
H10C3MC4MH12106.0°146.5°
H12C4MC5MH1346.1°64.2°
H12C4MC5MH1474.4°175.8°
H17C5BC4BH1983.9°174.6°
H18C5BC4BH19156.3°65.4°
H19C4BC3BH20100.6°123.7°
H20C3BC2BH2450.2°21.4°
H23C1BC2BH24177.8°160.3°
H24C2BO2BH2556.7°56.3°

225681

PDB entries from 2024-10-02

PDB statisticsPDBj update infoContact PDBjnumon