0U8
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O4' | C4' | sing | 1.43Å | 1.37Å | |
| O3' | C3' | sing | 1.43Å | 1.40Å | |
| C3' | C4' | sing | 1.55Å | 1.47Å | |
| C3' | C2' | sing | 1.55Å | 1.48Å | |
| C4' | C5' | sing | 1.60Å | 1.58Å | |
| C5' | C6' | sing | 1.58Å | 1.49Å | |
| C5' | O5' | sing | 1.44Å | 1.39Å | |
| O1' | C1' | sing | 1.43Å | 1.43Å | |
| C1' | C2' | sing | 1.55Å | 1.60Å | |
| C2' | O5' | sing | 1.31Å | 1.50Å | |
| C2' | O6 | sing | 1.45Å | 1.50Å | |
| C6' | O2 | sing | 1.43Å | 1.44Å | |
| O2 | C2 | sing | 1.41Å | 1.39Å | |
| O6 | C6 | sing | 1.46Å | 1.42Å | |
| O3 | C3 | sing | 1.43Å | 1.36Å | |
| C2 | O5 | sing | 1.48Å | 1.41Å | |
| C2 | C3 | sing | 1.56Å | 1.47Å | |
| C2 | C1 | sing | 1.49Å | 1.56Å | |
| C6 | C5 | sing | 1.54Å | 1.51Å | |
| C4 | C3 | sing | 1.49Å | 1.46Å | |
| C4 | C5 | sing | 1.49Å | 1.49Å | |
| C4 | O4 | sing | 1.43Å | 1.43Å | |
| O1 | C1 | sing | 1.43Å | 1.40Å | |
| O5 | C5 | sing | 1.50Å | 1.48Å | |
| O1' | H1 | sing | 0.97Å | 0.95Å | |
| C1' | H2 | sing | 1.09Å | 1.10Å | |
| C1' | H3 | sing | 1.09Å | 1.10Å | |
| C6 | H4 | sing | 1.09Å | 1.10Å | |
| C6 | H5 | sing | 1.09Å | 1.10Å | |
| C5 | H6 | sing | 1.09Å | 1.10Å | |
| C1 | H7 | sing | 1.09Å | 1.10Å | |
| C1 | H8 | sing | 1.09Å | 1.10Å | |
| O1 | H9 | sing | 0.97Å | 0.95Å | |
| C6' | H10 | sing | 1.09Å | 1.10Å | |
| C6' | H11 | sing | 1.09Å | 1.10Å | |
| C5' | H12 | sing | 1.11Å | 1.10Å | |
| C4' | H13 | sing | 1.09Å | 1.10Å | |
| O4' | H14 | sing | 0.97Å | 0.95Å | |
| C3' | H15 | sing | 1.09Å | 1.10Å | |
| O3' | H16 | sing | 0.97Å | 0.95Å | |
| C3 | H17 | sing | 1.09Å | 1.10Å | |
| O3 | H18 | sing | 0.97Å | 0.95Å | |
| C4 | H19 | sing | 1.09Å | 1.10Å | |
| O4 | H20 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O4' | C4' | C3' | 113.7° | 111.3° |
| O4' | C4' | C5' | 117.2° | 111.2° |
| O4' | C4' | H13 | 109.1° | 111.1° |
| C4' | O4' | H14 | 109.5° | 114.0° |
| O3' | C3' | C4' | 113.9° | 110.4° |
| O3' | C3' | C2' | 111.1° | 110.3° |
| O3' | C3' | H15 | 113.1° | 110.3° |
| C3' | O3' | H16 | 109.5° | 114.0° |
| C4' | C3' | C2' | 93.9° | 105.2° |
| C3' | C4' | C5' | 102.1° | 100.4° |
| C3' | C4' | H13 | 107.7° | 111.2° |
| C4' | C3' | H15 | 111.8° | 110.3° |
| C3' | C2' | C1' | 97.6° | 109.7° |
| C3' | C2' | O5' | 110.1° | 111.6° |
| C3' | C2' | O6 | 123.4° | 106.5° |
| C2' | C3' | H15 | 111.7° | 110.3° |
| C4' | C5' | C6' | 120.1° | 106.8° |
| C4' | C5' | O5' | 105.3° | 107.5° |
| C4' | C5' | H12 | 106.2° | 109.5° |
| C5' | C4' | H13 | 106.5° | 111.2° |
| C6' | C5' | O5' | 109.2° | 110.9° |
| C5' | C6' | O2 | 112.4° | 109.7° |
| C5' | C6' | H10 | 108.7° | 109.4° |
| C5' | C6' | H11 | 108.7° | 109.4° |
| C6' | C5' | H12 | 107.1° | 108.3° |
| C5' | O5' | C2' | 102.9° | 110.9° |
| O5' | C5' | H12 | 108.5° | 113.7° |
| O1' | C1' | C2' | 119.7° | 109.5° |
| C1' | O1' | H1 | 109.5° | 114.0° |
| O1' | C1' | H2 | 106.9° | 109.4° |
| O1' | C1' | H3 | 106.9° | 109.5° |
| C1' | C2' | O5' | 116.7° | 110.0° |
| C1' | C2' | O6 | 98.4° | 106.7° |
| C2' | C1' | H2 | 106.9° | 109.5° |
| C2' | C1' | H3 | 106.8° | 109.5° |
| O5' | C2' | O6 | 109.8° | 112.2° |
| C2' | O6 | C6 | 114.1° | 111.0° |
| C6' | O2 | C2 | 113.8° | 112.3° |
| O2 | C6' | H10 | 108.7° | 109.4° |
| O2 | C6' | H11 | 108.7° | 109.4° |
| O2 | C2 | O5 | 112.9° | 110.5° |
| O2 | C2 | C3 | 108.4° | 110.4° |
| O2 | C2 | C1 | 113.3° | 112.0° |
| O6 | C6 | C5 | 113.3° | 109.7° |
| O6 | C6 | H4 | 108.5° | 109.5° |
| O6 | C6 | H5 | 108.5° | 109.4° |
| O3 | C3 | C2 | 110.8° | 110.0° |
| O3 | C3 | C4 | 112.8° | 110.0° |
| O3 | C3 | H17 | 111.0° | 110.0° |
| C3 | O3 | H18 | 109.5° | 114.0° |
| O5 | C2 | C3 | 104.1° | 103.6° |
| O5 | C2 | C1 | 107.6° | 108.5° |
| C2 | O5 | C5 | 107.3° | 107.4° |
| C3 | C2 | C1 | 110.0° | 111.4° |
| C2 | C3 | C4 | 103.1° | 106.7° |
| C2 | C3 | H17 | 109.4° | 110.1° |
| C2 | C1 | O1 | 116.4° | 109.5° |
| C2 | C1 | H7 | 107.7° | 109.5° |
| C2 | C1 | H8 | 107.7° | 109.4° |
| C6 | C5 | C4 | 120.2° | 110.8° |
| C6 | C5 | O5 | 114.3° | 110.5° |
| C5 | C6 | H4 | 108.5° | 109.4° |
| C5 | C6 | H5 | 108.5° | 109.4° |
| C6 | C5 | H6 | 105.1° | 115.1° |
| C3 | C4 | C5 | 100.9° | 108.1° |
| C3 | C4 | O4 | 109.2° | 109.7° |
| C4 | C3 | H17 | 109.5° | 110.0° |
| C3 | C4 | H19 | 111.6° | 109.8° |
| C5 | C4 | O4 | 111.3° | 109.7° |
| C4 | C5 | O5 | 105.3° | 105.2° |
| C4 | C5 | H6 | 105.3° | 108.6° |
| C5 | C4 | H19 | 111.2° | 109.8° |
| O4 | C4 | H19 | 112.1° | 109.7° |
| C4 | O4 | H20 | 109.5° | 114.0° |
| O1 | C1 | H7 | 107.7° | 109.5° |
| O1 | C1 | H8 | 107.7° | 109.5° |
| C1 | O1 | H9 | 109.5° | 114.1° |
| O5 | C5 | H6 | 105.3° | 106.1° |
| H2 | C1' | H3 | 109.5° | 109.4° |
| H4 | C6 | H5 | 109.5° | 109.4° |
| H7 | C1 | H8 | 109.5° | 109.5° |
| H10 | C6' | H11 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O4' | C4' | C3' | O3' | 70.4° | 111.9° |
| O4' | C4' | C3' | C5' | 127.2° | 117.8° |
| O4' | C4' | C3' | H13 | 120.9° | 124.5° |
| O4' | C4' | C3' | C2' | 174.5° | 129.1° |
| O4' | C4' | C5' | H13 | 122.4° | 124.4° |
| O4' | C4' | C5' | C6' | 72.4° | 103.4° |
| O4' | C4' | C5' | O5' | 164.0° | 137.5° |
| O4' | C4' | C5' | H12 | 49.1° | 13.6° |
| O4' | C4' | C3' | H15 | 59.3° | 10.2° |
| O3' | C3' | C4' | C2' | 115.1° | 118.9° |
| O3' | C3' | C4' | H15 | 129.7° | 122.1° |
| O3' | C3' | C2' | H15 | 127.2° | 122.0° |
| O3' | C3' | C4' | C5' | 162.4° | 130.3° |
| O3' | C3' | C2' | C1' | 75.9° | 119.6° |
| O3' | C3' | C2' | O5' | 162.0° | 118.3° |
| O3' | C3' | C2' | O6 | 29.5° | 4.4° |
| O3' | C3' | C4' | H13 | 50.5° | 12.5° |
| C4' | C3' | C2' | H15 | 115.3° | 119.0° |
| C3' | C4' | C5' | H13 | 112.8° | 117.7° |
| C3' | C4' | C5' | C6' | 162.7° | 138.7° |
| C3' | C4' | C5' | O5' | 39.2° | 19.6° |
| C4' | C3' | C2' | C1' | 166.7° | 121.4° |
| C4' | C3' | C2' | O5' | 44.5° | 0.7° |
| C4' | C3' | C2' | O6 | 88.0° | 123.4° |
| C3' | C4' | C5' | H12 | 75.8° | 104.3° |
| C3' | C4' | O4' | H14 | 180.0° | 69.0° |
| C4' | C3' | O3' | H16 | 180.0° | 61.4° |
| C2' | C3' | C4' | C5' | 47.3° | 11.3° |
| C3' | C2' | O5' | C5' | 21.7° | 14.4° |
| C3' | C2' | C1' | O1' | 82.3° | 175.5° |
| C3' | C2' | C1' | O5' | 117.2° | 123.1° |
| C3' | C2' | C1' | O6 | 125.6° | 115.0° |
| C3' | C2' | O5' | O6 | 139.1° | 119.4° |
| C3' | C2' | O6 | C6 | 168.8° | 65.1° |
| C3' | C2' | C1' | H2 | 156.2° | 64.5° |
| C3' | C2' | C1' | H3 | 39.1° | 55.5° |
| C2' | C3' | C4' | H13 | 64.6° | 106.4° |
| C2' | C3' | O3' | H16 | 75.6° | 177.2° |
| C4' | C5' | C6' | O5' | 121.6° | 116.8° |
| C4' | C5' | C6' | H12 | 121.1° | 117.8° |
| C4' | C5' | O5' | H12 | 113.4° | 121.3° |
| C4' | C5' | O5' | C2' | 10.4° | 22.0° |
| C4' | C5' | C6' | O2 | 49.7° | 59.6° |
| C4' | C5' | C6' | H10 | 170.2° | 60.5° |
| C4' | C5' | C6' | H11 | 70.7° | 179.6° |
| C5' | C4' | O4' | H14 | 61.2° | 179.9° |
| C5' | C4' | C3' | H15 | 67.9° | 107.6° |
| C6' | C5' | O5' | H12 | 116.4° | 122.3° |
| C6' | C5' | O5' | C2' | 140.6° | 138.4° |
| C5' | C6' | O2 | H10 | 120.4° | 120.1° |
| C5' | C6' | O2 | H11 | 120.4° | 120.0° |
| C5' | C6' | O2 | C2 | 101.7° | 101.1° |
| C5' | C6' | H10 | H11 | 118.7° | 119.9° |
| C6' | C5' | C4' | H13 | 49.9° | 21.0° |
| C5' | O5' | C2' | C1' | 131.8° | 107.6° |
| C5' | O5' | C2' | O6 | 117.4° | 133.8° |
| O5' | C5' | C6' | O2 | 71.9° | 57.2° |
| O5' | C5' | C6' | H10 | 48.5° | 177.3° |
| O5' | C5' | C6' | H11 | 167.7° | 62.8° |
| O5' | C5' | C4' | H13 | 73.6° | 98.1° |
| O1' | C1' | C2' | H2 | 121.5° | 120.0° |
| O1' | C1' | C2' | H3 | 121.4° | 120.0° |
| O1' | C1' | C2' | O5' | 160.5° | 61.4° |
| O1' | C1' | C2' | O6 | 43.2° | 60.5° |
| O1' | C1' | H2 | H3 | 115.4° | 120.0° |
| C1' | C2' | O5' | O6 | 110.8° | 118.6° |
| C1' | C2' | O6 | C6 | 86.2° | 177.8° |
| C2' | C1' | O1' | H1 | 180.0° | 180.0° |
| C2' | C1' | H2 | H3 | 115.4° | 120.0° |
| C1' | C2' | C3' | H15 | 51.4° | 2.5° |
| O5' | C2' | O6 | C6 | 36.2° | 57.2° |
| O5' | C2' | C1' | H2 | 39.0° | 58.6° |
| O5' | C2' | C1' | H3 | 78.1° | 178.6° |
| C2' | O5' | C5' | H12 | 103.0° | 99.3° |
| O5' | C2' | C3' | H15 | 70.8° | 119.7° |
| C2' | O6 | C6 | C5 | 92.8° | 98.9° |
| O6 | C2' | C1' | H2 | 78.2° | 179.5° |
| O6 | C2' | C1' | H3 | 164.7° | 59.5° |
| C2' | O6 | C6 | H4 | 146.6° | 21.2° |
| C2' | O6 | C6 | H5 | 27.7° | 141.1° |
| O6 | C2' | C3' | H15 | 156.7° | 117.6° |
| C6' | O2 | C2 | O5 | 51.7° | 71.0° |
| C6' | O2 | C2 | C3 | 166.5° | 175.0° |
| C6' | O2 | C2 | C1 | 71.0° | 50.2° |
| O2 | C6' | H10 | H11 | 118.7° | 119.9° |
| O2 | C6' | C5' | H12 | 170.8° | 177.4° |
| O2 | C2 | C3 | O3 | 41.6° | 19.1° |
| O2 | C2 | O5 | C3 | 117.4° | 118.3° |
| O2 | C2 | O5 | C1 | 125.8° | 123.2° |
| O2 | C2 | C3 | C1 | 124.5° | 125.2° |
| O2 | C2 | C3 | C4 | 79.3° | 100.1° |
| O2 | C2 | C1 | O1 | 60.1° | 172.1° |
| O2 | C2 | O5 | C5 | 95.3° | 89.1° |
| O2 | C2 | C1 | H7 | 60.9° | 67.9° |
| O2 | C2 | C1 | H8 | 178.9° | 52.1° |
| C2 | O2 | C6' | H10 | 18.8° | 138.9° |
| C2 | O2 | C6' | H11 | 137.9° | 18.9° |
| O2 | C2 | C3 | H17 | 164.3° | 140.5° |
| O6 | C6 | C5 | H4 | 120.5° | 120.1° |
| O6 | C6 | C5 | H5 | 120.6° | 120.1° |
| O6 | C6 | C5 | C4 | 41.0° | 173.6° |
| O6 | C6 | C5 | O5 | 85.8° | 70.2° |
| O6 | C6 | H4 | H5 | 118.3° | 119.9° |
| O6 | C6 | C5 | H6 | 159.2° | 49.9° |
| O3 | C3 | C2 | O5 | 162.0° | 137.4° |
| O3 | C3 | C2 | C4 | 120.9° | 119.2° |
| O3 | C3 | C2 | H17 | 122.7° | 121.4° |
| O3 | C3 | C2 | C1 | 82.9° | 106.1° |
| O3 | C3 | C4 | H17 | 124.1° | 121.4° |
| O3 | C3 | C4 | C5 | 162.2° | 119.8° |
| O3 | C3 | C4 | O4 | 80.5° | 120.6° |
| O3 | C3 | C4 | H19 | 44.0° | 0.0° |
| O5 | C2 | C3 | C1 | 115.1° | 116.5° |
| C2 | O5 | C5 | C6 | 138.6° | 90.1° |
| O5 | C2 | C3 | C4 | 41.1° | 18.2° |
| C2 | O5 | C5 | C4 | 4.5° | 29.6° |
| O5 | C2 | C1 | O1 | 65.4° | 65.6° |
| C2 | O5 | C5 | H6 | 106.6° | 144.6° |
| O5 | C2 | C1 | H7 | 173.5° | 54.4° |
| O5 | C2 | C1 | H8 | 55.6° | 174.4° |
| O5 | C2 | C3 | H17 | 75.3° | 101.1° |
| C2 | C3 | C4 | H17 | 116.4° | 119.4° |
| C2 | C3 | C4 | C5 | 42.6° | 0.5° |
| C2 | C3 | C4 | O4 | 160.0° | 120.1° |
| C3 | C2 | C1 | O1 | 178.3° | 47.8° |
| C3 | C2 | O5 | C5 | 22.1° | 29.2° |
| C3 | C2 | C1 | H7 | 60.7° | 167.9° |
| C3 | C2 | C1 | H8 | 57.3° | 72.2° |
| C2 | C3 | O3 | H18 | 180.0° | 179.9° |
| C2 | C3 | C4 | H19 | 75.6° | 119.3° |
| C1 | C2 | C3 | C4 | 156.2° | 134.7° |
| C2 | C1 | O1 | H7 | 121.0° | 120.1° |
| C2 | C1 | O1 | H8 | 121.0° | 120.0° |
| C1 | C2 | O5 | C5 | 138.9° | 147.7° |
| C2 | C1 | H7 | H8 | 116.8° | 119.9° |
| C2 | C1 | O1 | H9 | 180.0° | 180.0° |
| C1 | C2 | C3 | H17 | 39.8° | 15.4° |
| C6 | C5 | C4 | C3 | 159.9° | 102.2° |
| C6 | C5 | C4 | O5 | 130.8° | 119.4° |
| C6 | C5 | C4 | H6 | 118.1° | 127.4° |
| C6 | C5 | C4 | O4 | 84.3° | 138.2° |
| C6 | C5 | O5 | H6 | 114.9° | 125.4° |
| C5 | C6 | H4 | H5 | 118.3° | 119.9° |
| C6 | C5 | C4 | H19 | 41.4° | 17.6° |
| C3 | C4 | C5 | O4 | 115.8° | 119.7° |
| C3 | C4 | C5 | H19 | 118.4° | 119.7° |
| C3 | C4 | O4 | H19 | 124.2° | 120.6° |
| C3 | C4 | C5 | O5 | 29.0° | 17.2° |
| C3 | C4 | C5 | H6 | 82.0° | 130.5° |
| C4 | C3 | O3 | H18 | 65.0° | 62.9° |
| C3 | C4 | O4 | H20 | 180.0° | 61.5° |
| C5 | C4 | O4 | H19 | 125.3° | 120.7° |
| C4 | C5 | O5 | H6 | 111.0° | 115.0° |
| C4 | C5 | C6 | H4 | 79.6° | 66.3° |
| C4 | C5 | C6 | H5 | 161.6° | 53.5° |
| C5 | C4 | C3 | H17 | 73.7° | 118.9° |
| C5 | C4 | O4 | H20 | 69.5° | 179.8° |
| O4 | C4 | C5 | O5 | 144.8° | 102.4° |
| O4 | C4 | C5 | H6 | 33.8° | 10.8° |
| O4 | C4 | C3 | H17 | 43.6° | 0.8° |
| O1 | C1 | H7 | H8 | 116.9° | 120.0° |
| O5 | C5 | C6 | H4 | 153.6° | 49.9° |
| O5 | C5 | C6 | H5 | 34.8° | 169.7° |
| O5 | C5 | C4 | H19 | 89.4° | 137.0° |
| H1 | O1' | C1' | H2 | 58.6° | 60.0° |
| H1 | O1' | C1' | H3 | 58.6° | 60.0° |
| H4 | C6 | C5 | H6 | 38.6° | 170.0° |
| H5 | C6 | C5 | H6 | 80.2° | 70.2° |
| H6 | C5 | C4 | H19 | 159.5° | 109.8° |
| H7 | C1 | O1 | H9 | 59.0° | 59.9° |
| H8 | C1 | O1 | H9 | 59.0° | 60.1° |
| H10 | C6' | C5' | H12 | 68.7° | 57.3° |
| H11 | C6' | C5' | H12 | 50.4° | 62.6° |
| H12 | C5' | C4' | H13 | 171.5° | 138.0° |
| H13 | C4' | O4' | H14 | 59.8° | 55.5° |
| H13 | C4' | C3' | H15 | 179.8° | 134.6° |
| H15 | C3' | O3' | H16 | 50.9° | 60.7° |
| H17 | C3 | O3 | H18 | 58.2° | 58.5° |
| H17 | C3 | C4 | H19 | 168.1° | 121.4° |
| H19 | C4 | O4 | H20 | 55.8° | 59.1° |
