0U1
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CSE | SE | sing | 1.96Å | 1.97Å | |
| O4' | C4' | sing | 1.44Å | 1.46Å | |
| O4' | C1' | sing | 1.44Å | 1.48Å | |
| C4' | C5' | sing | 1.53Å | 1.54Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| SE | C2' | sing | 1.96Å | 1.99Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| C1' | C2' | sing | 1.55Å | 1.54Å | |
| C1' | N1 | sing | 1.47Å | 1.50Å | |
| O3' | C3' | sing | 1.43Å | 1.46Å | |
| C2' | C3' | sing | 1.55Å | 1.55Å | |
| O2 | C2 | doub | 1.22Å | 1.23Å | |
| OP2 | P | sing | 1.61Å | 1.47Å | |
| O5' | P | sing | 1.61Å | 1.62Å | |
| N1 | C2 | sing | 1.35Å | 1.36Å | |
| N1 | C6 | sing | 1.37Å | 1.42Å | |
| P | OP1 | doub | 1.48Å | 1.47Å | |
| C2 | N3 | sing | 1.35Å | 1.41Å | |
| C6 | C5 | doub | 1.35Å | 1.40Å | |
| N3 | C4 | sing | 1.35Å | 1.42Å | |
| C5 | C4 | sing | 1.42Å | 1.40Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| CSE | HC1 | sing | 1.09Å | 1.10Å | |
| CSE | HC2 | sing | 1.09Å | 1.10Å | |
| CSE | HC3 | sing | 1.09Å | 1.10Å | |
| P | OP3 | sing | 1.61Å | 66.22Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CSE | SE | C2' | 100.4° | 101.0° |
| SE | CSE | HC1 | 109.5° | 109.5° |
| SE | CSE | HC2 | 109.5° | 109.5° |
| SE | CSE | HC3 | 109.4° | 109.5° |
| C4' | O4' | C1' | 110.4° | 107.0° |
| O4' | C4' | C5' | 107.4° | 109.9° |
| O4' | C4' | C3' | 105.1° | 107.3° |
| O4' | C4' | H4' | 112.1° | 110.0° |
| O4' | C1' | C2' | 106.6° | 103.5° |
| O4' | C1' | N1 | 116.7° | 110.6° |
| O4' | C1' | H1' | 107.7° | 110.6° |
| C5' | C4' | C3' | 110.2° | 109.9° |
| C4' | C5' | O5' | 109.1° | 109.5° |
| C4' | C5' | H5' | 109.5° | 109.5° |
| C4' | C5' | H5'' | 109.6° | 109.4° |
| C5' | C4' | H4' | 110.9° | 109.9° |
| C4' | C3' | O3' | 112.2° | 110.5° |
| C4' | C3' | C2' | 104.2° | 104.2° |
| C3' | C4' | H4' | 111.0° | 109.8° |
| C4' | C3' | H3' | 109.1° | 110.5° |
| SE | C2' | C1' | 107.9° | 110.9° |
| SE | C2' | C3' | 117.3° | 110.9° |
| SE | C2' | H2' | 106.2° | 110.8° |
| C5' | O5' | P | 124.7° | 123.0° |
| O5' | C5' | H5' | 109.5° | 109.5° |
| O5' | C5' | H5'' | 109.5° | 109.5° |
| C2' | C1' | N1 | 110.8° | 110.6° |
| C1' | C2' | C3' | 103.2° | 102.1° |
| C1' | C2' | H2' | 111.2° | 110.9° |
| C2' | C1' | H1' | 107.0° | 110.6° |
| C1' | N1 | C2 | 120.0° | 119.6° |
| C1' | N1 | C6 | 120.3° | 119.7° |
| N1 | C1' | H1' | 107.5° | 110.7° |
| O3' | C3' | C2' | 112.2° | 110.6° |
| O3' | C3' | H3' | 110.1° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C2' | C3' | H3' | 108.8° | 110.5° |
| C3' | C2' | H2' | 111.0° | 110.9° |
| O2 | C2 | N1 | 120.9° | 119.6° |
| O2 | C2 | N3 | 119.1° | 119.5° |
| OP2 | P | O5' | 110.4° | 109.5° |
| OP2 | P | OP1 | 120.6° | 109.4° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| OP2 | P | OP3 | 150.2° | 109.5° |
| O5' | P | OP1 | 108.6° | 109.5° |
| O5' | P | OP3 | 91.0° | 109.5° |
| C2 | N1 | C6 | 119.6° | 120.7° |
| N1 | C2 | N3 | 120.0° | 120.9° |
| N1 | C6 | C5 | 121.5° | 119.7° |
| N1 | C6 | H6 | 119.2° | 120.2° |
| OP1 | P | OP3 | 29.8° | 109.4° |
| C2 | N3 | C4 | 120.5° | 120.3° |
| C2 | N3 | H3 | 119.7° | 119.8° |
| C6 | C5 | C4 | 118.7° | 119.1° |
| C6 | C5 | H5 | 120.7° | 120.5° |
| C5 | C6 | H6 | 119.2° | 120.1° |
| N3 | C4 | C5 | 119.5° | 119.4° |
| N3 | C4 | O4 | 120.6° | 120.3° |
| C4 | N3 | H3 | 119.7° | 119.9° |
| C5 | C4 | O4 | 119.9° | 120.3° |
| C4 | C5 | H5 | 120.6° | 120.4° |
| H5' | C5' | H5'' | 109.5° | 109.4° |
| HC1 | CSE | HC2 | 109.4° | 109.5° |
| HC1 | CSE | HC3 | 109.5° | 109.5° |
| HC2 | CSE | HC3 | 109.5° | 109.5° |
| P | OP3 | HOP3 | 90.0° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CSE | SE | C2' | C1' | 29.5° | 174.2° |
| CSE | SE | C2' | C3' | 86.4° | 61.5° |
| CSE | SE | C2' | H2' | 148.9° | 62.2° |
| SE | CSE | HC1 | HC2 | 120.0° | 120.0° |
| SE | CSE | HC1 | HC3 | 120.0° | 120.0° |
| SE | CSE | HC2 | HC3 | 120.0° | 120.0° |
| O4' | C4' | C5' | C3' | 114.0° | 117.9° |
| O4' | C4' | C5' | H4' | 122.8° | 121.2° |
| O4' | C4' | C3' | H4' | 121.4° | 119.5° |
| O4' | C4' | C5' | O5' | 53.3° | 67.2° |
| C4' | O4' | C1' | C2' | 1.6° | 40.1° |
| C4' | O4' | C1' | N1 | 122.7° | 158.5° |
| O4' | C4' | C3' | O3' | 152.3° | 120.8° |
| O4' | C4' | C3' | C2' | 30.7° | 2.0° |
| O4' | C4' | C5' | H5' | 173.2° | 172.8° |
| O4' | C4' | C5' | H5'' | 66.7° | 52.9° |
| O4' | C4' | C3' | H3' | 85.4° | 116.6° |
| C4' | O4' | C1' | H1' | 116.2° | 78.4° |
| C1' | O4' | C4' | C5' | 135.7° | 146.0° |
| C1' | O4' | C4' | C3' | 18.3° | 26.5° |
| O4' | C1' | C2' | SE | 104.3° | 155.3° |
| O4' | C1' | C2' | N1 | 127.9° | 118.5° |
| O4' | C1' | C2' | H1' | 115.1° | 118.5° |
| O4' | C1' | N1 | H1' | 121.1° | 123.0° |
| O4' | C1' | C2' | C3' | 20.5° | 37.0° |
| O4' | C1' | N1 | C2 | 148.3° | 1.5° |
| O4' | C1' | N1 | C6 | 31.8° | 178.8° |
| C1' | O4' | C4' | H4' | 102.3° | 92.9° |
| O4' | C1' | C2' | H2' | 139.6° | 81.2° |
| C5' | C4' | C3' | H4' | 123.2° | 121.0° |
| C4' | C5' | O5' | H5' | 119.9° | 120.0° |
| C4' | C5' | O5' | H5'' | 120.0° | 120.0° |
| C5' | C4' | C3' | O3' | 92.3° | 119.7° |
| C5' | C4' | C3' | C2' | 146.1° | 121.5° |
| C4' | C5' | O5' | P | 166.4° | 180.0° |
| C4' | C5' | H5' | H5'' | 120.2° | 119.9° |
| C5' | C4' | C3' | H3' | 30.0° | 2.8° |
| C4' | C3' | C2' | SE | 87.3° | 139.1° |
| C3' | C4' | C5' | O5' | 60.7° | 175.0° |
| C4' | C3' | C2' | C1' | 31.2° | 20.9° |
| C4' | C3' | O3' | C2' | 116.9° | 114.9° |
| C4' | C3' | O3' | H3' | 121.7° | 122.6° |
| C4' | C3' | C2' | H3' | 116.3° | 118.6° |
| C3' | C4' | C5' | H5' | 59.2° | 55.0° |
| C3' | C4' | C5' | H5'' | 179.3° | 65.0° |
| C4' | C3' | O3' | HO3' | 180.0° | 61.4° |
| C4' | C3' | C2' | H2' | 150.4° | 97.3° |
| SE | C2' | C1' | C3' | 124.8° | 118.3° |
| SE | C2' | C1' | H2' | 116.1° | 123.6° |
| SE | C2' | C1' | N1 | 127.7° | 86.2° |
| SE | C2' | C3' | O3' | 34.3° | 20.4° |
| SE | C2' | C3' | H2' | 122.3° | 123.6° |
| SE | C2' | C3' | H3' | 156.4° | 102.2° |
| SE | C2' | C1' | H1' | 10.7° | 36.8° |
| C2' | SE | CSE | HC1 | 180.0° | 180.0° |
| C2' | SE | CSE | HC2 | 60.0° | 60.0° |
| C2' | SE | CSE | HC3 | 60.0° | 60.0° |
| C5' | O5' | P | OP2 | 27.8° | 175.0° |
| C5' | O5' | P | OP1 | 162.1° | 55.0° |
| O5' | C5' | H5' | H5'' | 120.1° | 120.0° |
| O5' | C5' | C4' | H4' | 176.0° | 54.0° |
| C5' | O5' | P | OP3 | 173.4° | 65.0° |
| C2' | C1' | N1 | H1' | 116.7° | 122.9° |
| C1' | C2' | C3' | O3' | 152.8° | 97.9° |
| C1' | C2' | C3' | H2' | 119.3° | 118.2° |
| C2' | C1' | N1 | C2 | 89.5° | 115.6° |
| C2' | C1' | N1 | C6 | 90.4° | 64.7° |
| C1' | C2' | C3' | H3' | 85.1° | 139.5° |
| N1 | C1' | C2' | C3' | 107.5° | 155.5° |
| C1' | N1 | C2 | O2 | 0.4° | 0.0° |
| C1' | N1 | C2 | C6 | 180.0° | 179.7° |
| C1' | N1 | C2 | N3 | 179.6° | 180.0° |
| C1' | N1 | C6 | C5 | 179.8° | 179.8° |
| N1 | C1' | C2' | H2' | 11.6° | 37.3° |
| C1' | N1 | C6 | H6 | 0.2° | 0.0° |
| O3' | C3' | C2' | H3' | 122.1° | 122.6° |
| O3' | C3' | C4' | H4' | 31.0° | 1.3° |
| O3' | C3' | C2' | H2' | 88.0° | 143.9° |
| C2' | C3' | C4' | H4' | 90.7° | 117.5° |
| C2' | C3' | O3' | HO3' | 63.1° | 176.3° |
| C3' | C2' | C1' | H1' | 135.6° | 81.5° |
| O2 | C2 | N1 | N3 | 179.9° | 180.0° |
| O2 | C2 | N1 | C6 | 179.7° | 179.7° |
| O2 | C2 | N3 | C4 | 179.4° | 180.0° |
| O2 | C2 | N3 | H3 | 0.5° | 0.0° |
| OP2 | P | O5' | OP1 | 134.3° | 120.0° |
| OP2 | P | O5' | OP3 | 158.8° | 120.0° |
| OP2 | P | OP1 | OP3 | 174.6° | 120.0° |
| OP2 | P | OP3 | HOP3 | 90.0° | 60.0° |
| O5' | P | OP1 | OP3 | 56.6° | 120.0° |
| P | O5' | C5' | H5' | 73.7° | 60.0° |
| P | O5' | C5' | H5'' | 46.5° | 60.0° |
| O5' | P | OP2 | HOP2 | 128.0° | 180.0° |
| O5' | P | OP3 | HOP3 | 90.0° | 60.0° |
| C2 | N1 | C6 | C5 | 0.2° | 0.5° |
| N1 | C2 | N3 | C4 | 0.6° | 0.1° |
| C2 | N1 | C1' | H1' | 27.1° | 121.5° |
| N1 | C2 | N3 | H3 | 179.4° | 179.9° |
| C2 | N1 | C6 | H6 | 179.8° | 179.7° |
| C6 | N1 | C2 | N3 | 0.4° | 0.3° |
| N1 | C6 | C5 | H6 | 180.0° | 179.8° |
| N1 | C6 | C5 | C4 | 0.2° | 0.5° |
| C6 | N1 | C1' | H1' | 152.9° | 58.2° |
| N1 | C6 | C5 | H5 | 179.8° | 179.7° |
| OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 90.0° | 179.9° |
| C2 | N3 | C4 | H3 | 180.0° | 180.0° |
| C2 | N3 | C4 | C5 | 0.6° | 0.0° |
| C2 | N3 | C4 | O4 | 179.9° | 180.0° |
| C6 | C5 | C4 | N3 | 0.4° | 0.3° |
| C6 | C5 | C4 | H5 | 180.0° | 179.8° |
| C6 | C5 | C4 | O4 | 179.9° | 179.8° |
| N3 | C4 | C5 | O4 | 179.5° | 180.0° |
| N3 | C4 | C5 | H5 | 179.6° | 179.9° |
| C5 | C4 | N3 | H3 | 179.4° | 180.0° |
| C4 | C5 | C6 | H6 | 179.8° | 179.7° |
| O4 | C4 | N3 | H3 | 0.1° | 0.0° |
| O4 | C4 | C5 | H5 | 0.1° | 0.0° |
| H5' | C5' | C4' | H4' | 64.0° | 66.0° |
| H5'' | C5' | C4' | H4' | 56.1° | 174.0° |
| H4' | C4' | C3' | H3' | 153.2° | 123.8° |
| H3' | C3' | O3' | HO3' | 58.3° | 61.1° |
| H3' | C3' | C2' | H2' | 34.1° | 21.4° |
| H2' | C2' | C1' | H1' | 105.3° | 160.3° |
| H5 | C5 | C6 | H6 | 0.2° | 0.1° |
| HOP2 | OP2 | P | OP3 | 5.4° | 59.9° |
| HC1 | CSE | HC2 | HC3 | 120.0° | 120.0° |
