0U
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.61Å | 1.61Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| P | OP1 | doub | 1.48Å | 1.49Å | |
| P | OP2 | sing | 1.61Å | 1.49Å | |
| P | O5' | sing | 1.61Å | 1.55Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.41Å | |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.40Å | |
| C2' | C1' | sing | 1.54Å | 1.54Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.46Å | 1.51Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.35Å | 1.38Å | |
| N1 | C6 | sing | 1.37Å | 1.38Å | |
| C2 | O2 | doub | 1.22Å | 1.22Å | |
| C2 | N3 | sing | 1.35Å | 1.38Å | |
| N3 | C4 | sing | 1.35Å | 1.38Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C4 | C5 | sing | 1.42Å | 1.44Å | |
| C5 | C6 | doub | 1.35Å | 1.34Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| OP3 | P | OP1 | 107.5° | 109.4° |
| OP3 | P | OP2 | 106.0° | 109.5° |
| OP3 | P | O5' | 103.7° | 109.5° |
| OP1 | P | OP2 | 121.9° | 109.5° |
| OP1 | P | O5' | 106.4° | 109.5° |
| OP2 | P | O5' | 109.8° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| P | O5' | C5' | 119.0° | 123.0° |
| O5' | C5' | C4' | 108.3° | 109.5° |
| O5' | C5' | H5' | 109.9° | 109.5° |
| O5' | C5' | H5'' | 109.9° | 109.5° |
| C4' | C5' | H5' | 109.8° | 109.5° |
| C4' | C5' | H5'' | 109.9° | 109.4° |
| C5' | C4' | O4' | 111.3° | 110.4° |
| C5' | C4' | C3' | 114.8° | 110.4° |
| C5' | C4' | H4' | 103.0° | 110.3° |
| H5' | C5' | H5'' | 109.1° | 109.4° |
| O4' | C4' | C3' | 104.7° | 104.8° |
| O4' | C4' | H4' | 113.4° | 110.4° |
| C4' | O4' | C1' | 109.2° | 105.3° |
| C3' | C4' | H4' | 109.9° | 110.5° |
| C4' | C3' | O3' | 111.2° | 110.5° |
| C4' | C3' | C2' | 100.1° | 104.0° |
| C4' | C3' | H3' | 114.5° | 110.5° |
| O4' | C1' | C2' | 106.1° | 104.8° |
| O4' | C1' | N1 | 111.4° | 110.4° |
| O4' | C1' | H1' | 111.3° | 110.3° |
| O3' | C3' | C2' | 109.8° | 110.6° |
| O3' | C3' | H3' | 105.6° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C2' | C3' | H3' | 115.8° | 110.7° |
| C3' | C2' | O2' | 110.0° | 110.5° |
| C3' | C2' | C1' | 102.4° | 104.1° |
| C3' | C2' | H2' | 114.5° | 110.5° |
| O2' | C2' | C1' | 111.7° | 110.5° |
| O2' | C2' | H2' | 105.6° | 110.4° |
| C2' | O2' | HO2' | 109.5° | 114.1° |
| C1' | C2' | H2' | 112.8° | 110.6° |
| C2' | C1' | N1 | 111.8° | 110.4° |
| C2' | C1' | H1' | 110.8° | 110.4° |
| N1 | C1' | H1' | 105.5° | 110.4° |
| C1' | N1 | C2 | 120.4° | 119.7° |
| C1' | N1 | C6 | 119.3° | 119.7° |
| C2 | N1 | C6 | 120.3° | 120.6° |
| N1 | C2 | O2 | 122.8° | 119.5° |
| N1 | C2 | N3 | 114.9° | 121.0° |
| N1 | C6 | C5 | 124.1° | 119.7° |
| N1 | C6 | H6 | 117.9° | 120.2° |
| O2 | C2 | N3 | 122.3° | 119.5° |
| C2 | N3 | C4 | 127.1° | 120.3° |
| C2 | N3 | H3 | 116.4° | 119.9° |
| C4 | N3 | H3 | 116.5° | 119.8° |
| N3 | C4 | O4 | 121.3° | 120.3° |
| N3 | C4 | C5 | 115.0° | 119.4° |
| O4 | C4 | C5 | 123.7° | 120.3° |
| C4 | C5 | C6 | 118.6° | 119.1° |
| C4 | C5 | H5 | 120.7° | 120.5° |
| C6 | C5 | H5 | 120.7° | 120.4° |
| C5 | C6 | H6 | 118.0° | 120.2° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 122.5° | 120.0° |
| OP3 | P | OP1 | O5' | 110.7° | 120.0° |
| OP3 | P | OP2 | O5' | 111.4° | 120.0° |
| OP3 | P | OP2 | HOP2 | 123.2° | 60.0° |
| OP3 | P | O5' | C5' | 70.4° | 65.0° |
| HOP3 | OP3 | P | OP1 | 0.0° | 180.0° |
| HOP3 | OP3 | P | OP2 | 131.9° | 60.0° |
| HOP3 | OP3 | P | O5' | 112.5° | 60.0° |
| OP1 | P | OP2 | O5' | 125.3° | 120.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
| OP1 | P | O5' | C5' | 42.9° | 55.0° |
| OP2 | P | O5' | C5' | 176.7° | 175.0° |
| O5' | P | OP2 | HOP2 | 125.4° | 180.0° |
| P | O5' | C5' | C4' | 174.5° | 180.0° |
| P | O5' | C5' | H5' | 54.5° | 60.0° |
| P | O5' | C5' | H5'' | 65.5° | 60.0° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'' | 120.0° | 120.0° |
| O5' | C5' | H5' | H5'' | 120.5° | 120.0° |
| O5' | C5' | C4' | O4' | 62.6° | 66.4° |
| O5' | C5' | C4' | C3' | 56.1° | 178.2° |
| O5' | C5' | C4' | H4' | 175.5° | 55.8° |
| C4' | C5' | H5' | H5'' | 120.5° | 119.9° |
| C5' | C4' | O4' | C3' | 124.6° | 118.9° |
| C5' | C4' | O4' | H4' | 115.6° | 122.2° |
| C5' | C4' | C3' | H4' | 115.5° | 122.3° |
| C5' | C4' | O4' | C1' | 146.5° | 159.4° |
| C5' | C4' | C3' | O3' | 83.1° | 98.5° |
| C5' | C4' | C3' | C2' | 160.9° | 142.8° |
| C5' | C4' | C3' | H3' | 36.4° | 24.0° |
| H5' | C5' | C4' | O4' | 57.4° | 173.5° |
| H5' | C5' | C4' | C3' | 176.1° | 58.1° |
| H5' | C5' | C4' | H4' | 64.5° | 64.2° |
| H5'' | C5' | C4' | O4' | 177.4° | 53.6° |
| H5'' | C5' | C4' | C3' | 63.9° | 61.8° |
| H5'' | C5' | C4' | H4' | 55.5° | 175.8° |
| O4' | C4' | C3' | H4' | 122.1° | 118.9° |
| O4' | C4' | C3' | O3' | 154.5° | 142.6° |
| O4' | C4' | C3' | C2' | 38.5° | 24.0° |
| O4' | C4' | C3' | H3' | 86.0° | 94.8° |
| C4' | O4' | C1' | C2' | 4.0° | 40.5° |
| C4' | O4' | C1' | N1 | 118.0° | 159.3° |
| C4' | O4' | C1' | H1' | 124.6° | 78.3° |
| C3' | C4' | O4' | C1' | 21.9° | 40.5° |
| C4' | C3' | O3' | C2' | 109.8° | 114.6° |
| C4' | C3' | O3' | H3' | 124.7° | 122.5° |
| C4' | C3' | C2' | H3' | 123.6° | 118.7° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C4' | C3' | C2' | O2' | 79.0° | 118.7° |
| C4' | C3' | C2' | C1' | 39.9° | 0.0° |
| C4' | C3' | C2' | H2' | 162.3° | 118.8° |
| H4' | C4' | O4' | C1' | 97.8° | 78.4° |
| H4' | C4' | C3' | O3' | 32.4° | 23.8° |
| H4' | C4' | C3' | C2' | 83.6° | 94.9° |
| H4' | C4' | C3' | H3' | 151.9° | 146.3° |
| O4' | C1' | C2' | C3' | 28.4° | 23.9° |
| O4' | C1' | C2' | O2' | 89.3° | 142.6° |
| O4' | C1' | C2' | N1 | 121.6° | 118.9° |
| O4' | C1' | C2' | H1' | 121.0° | 118.7° |
| O4' | C1' | C2' | H2' | 151.9° | 94.8° |
| O4' | C1' | N1 | H1' | 120.9° | 122.3° |
| O4' | C1' | N1 | C2 | 158.5° | 1.4° |
| O4' | C1' | N1 | C6 | 23.8° | 178.8° |
| O3' | C3' | C2' | H3' | 119.4° | 122.7° |
| O3' | C3' | C2' | O2' | 38.0° | 0.1° |
| O3' | C3' | C2' | C1' | 156.9° | 118.6° |
| O3' | C3' | C2' | H2' | 80.7° | 122.6° |
| C2' | C3' | O3' | HO3' | 70.1° | 65.4° |
| C3' | C2' | O2' | C1' | 113.0° | 114.7° |
| C3' | C2' | O2' | H2' | 124.0° | 122.5° |
| C3' | C2' | C1' | H2' | 123.6° | 118.7° |
| C3' | C2' | O2' | HO2' | 180.0° | 61.4° |
| C3' | C2' | C1' | N1 | 93.3° | 142.8° |
| C3' | C2' | C1' | H1' | 149.3° | 94.8° |
| H3' | C3' | O3' | HO3' | 55.3° | 57.5° |
| H3' | C3' | C2' | O2' | 157.3° | 122.6° |
| H3' | C3' | C2' | C1' | 83.7° | 118.7° |
| H3' | C3' | C2' | H2' | 38.7° | 0.1° |
| O2' | C2' | C1' | H2' | 118.7° | 122.6° |
| O2' | C2' | C1' | N1 | 149.1° | 98.5° |
| O2' | C2' | C1' | H1' | 31.7° | 23.9° |
| C1' | C2' | O2' | HO2' | 67.0° | 176.1° |
| C2' | C1' | N1 | H1' | 120.5° | 122.3° |
| C2' | C1' | N1 | C2 | 82.9° | 116.8° |
| C2' | C1' | N1 | C6 | 94.7° | 63.4° |
| H2' | C2' | O2' | HO2' | 56.0° | 61.2° |
| H2' | C2' | C1' | N1 | 30.3° | 24.1° |
| H2' | C2' | C1' | H1' | 87.1° | 146.5° |
| C1' | N1 | C2 | C6 | 177.6° | 179.8° |
| C1' | N1 | C2 | O2 | 2.2° | 0.1° |
| C1' | N1 | C2 | N3 | 179.6° | 180.0° |
| C1' | N1 | C6 | C5 | 178.9° | 179.7° |
| C1' | N1 | C6 | H6 | 1.0° | 0.0° |
| H1' | C1' | N1 | C2 | 37.6° | 120.9° |
| H1' | C1' | N1 | C6 | 144.7° | 58.9° |
| N1 | C2 | O2 | N3 | 178.1° | 179.9° |
| N1 | C2 | N3 | C4 | 1.7° | 0.1° |
| N1 | C2 | N3 | H3 | 178.3° | 180.0° |
| C2 | N1 | C6 | C5 | 1.3° | 0.5° |
| C2 | N1 | C6 | H6 | 178.7° | 179.8° |
| C6 | N1 | C2 | O2 | 179.8° | 179.7° |
| C6 | N1 | C2 | N3 | 1.9° | 0.2° |
| N1 | C6 | C5 | C4 | 0.1° | 0.6° |
| N1 | C6 | C5 | H6 | 180.0° | 179.7° |
| N1 | C6 | C5 | H5 | 179.9° | 179.7° |
| O2 | C2 | N3 | C4 | 180.0° | 180.0° |
| O2 | C2 | N3 | H3 | 0.0° | 0.1° |
| C2 | N3 | C4 | H3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 179.4° | 180.0° |
| C2 | N3 | C4 | C5 | 0.7° | 0.1° |
| N3 | C4 | O4 | C5 | 179.9° | 179.9° |
| N3 | C4 | C5 | C6 | 0.2° | 0.3° |
| N3 | C4 | C5 | H5 | 179.8° | 180.0° |
| H3 | N3 | C4 | O4 | 0.6° | 0.1° |
| H3 | N3 | C4 | C5 | 179.3° | 180.0° |
| O4 | C4 | C5 | C6 | 179.7° | 179.7° |
| O4 | C4 | C5 | H5 | 0.3° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 179.7° |
| C4 | C5 | C6 | H6 | 179.8° | 179.8° |
| H5 | C5 | C6 | H6 | 0.2° | 0.0° |
