0R5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3G | PG | doub | 1.48Å | 1.51Å | |
| O2G | PG | sing | 1.61Å | 1.49Å | |
| PG | O1G | sing | 1.61Å | 1.51Å | |
| PG | O3B | sing | 1.61Å | 1.64Å | |
| O2B | PB | doub | 1.48Å | 1.50Å | |
| O1A | PA | doub | 1.48Å | 1.47Å | |
| O3B | PB | sing | 1.61Å | 1.62Å | |
| PB | O1B | sing | 1.61Å | 1.51Å | |
| PB | O3A | sing | 1.61Å | 1.62Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| PA | O3A | sing | 1.61Å | 1.62Å | |
| PA | O5' | sing | 1.61Å | 1.60Å | |
| PA | O2A | sing | 1.61Å | 1.52Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C3' | C2' | sing | 1.54Å | 1.52Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C2' | C1' | sing | 1.54Å | 1.52Å | |
| C35 | C36 | doub | 1.37Å | 1.40Å | Aromatic |
| C35 | C34 | sing | 1.40Å | 1.39Å | Aromatic |
| C1' | N1 | sing | 1.46Å | 1.48Å | |
| C36 | C31 | sing | 1.40Å | 1.39Å | Aromatic |
| C38 | C37 | trip | 1.17Å | 1.28Å | |
| C37 | C34 | sing | 1.43Å | 1.29Å | |
| C34 | C33 | doub | 1.40Å | 1.40Å | Aromatic |
| C6 | N1 | sing | 1.36Å | 1.35Å | |
| C6 | C5 | doub | 1.37Å | 1.37Å | |
| N1 | C2 | sing | 1.34Å | 1.42Å | |
| C31 | C30 | sing | 1.43Å | 1.30Å | |
| C31 | C32 | doub | 1.40Å | 1.40Å | Aromatic |
| C30 | C5M | trip | 1.17Å | 1.19Å | |
| C5M | C5 | sing | 1.43Å | 1.30Å | |
| C5 | C4 | sing | 1.47Å | 1.50Å | |
| C33 | C32 | sing | 1.37Å | 1.39Å | Aromatic |
| C2 | O2 | doub | 1.22Å | 1.26Å | |
| C2 | N3 | sing | 1.34Å | 1.35Å | |
| C4 | N3 | sing | 1.35Å | 1.35Å | |
| C4 | O4 | doub | 1.22Å | 1.25Å | |
| O2G | H1 | sing | 0.97Å | 0.95Å | |
| O1G | H2 | sing | 0.97Å | 0.95Å | |
| O1B | H3 | sing | 0.97Å | 0.95Å | |
| O2A | H4 | sing | 0.97Å | 0.95Å | |
| C5' | H5 | sing | 1.09Å | 1.10Å | |
| C5' | H6 | sing | 1.09Å | 1.10Å | |
| C4' | H7 | sing | 1.09Å | 1.10Å | |
| C3' | H8 | sing | 1.09Å | 1.10Å | |
| O3' | H9 | sing | 0.97Å | 0.95Å | |
| C2' | H10 | sing | 1.09Å | 1.10Å | |
| C2' | H11 | sing | 1.09Å | 1.10Å | |
| C1' | H12 | sing | 1.09Å | 1.10Å | |
| N3 | H13 | sing | 0.97Å | 1.00Å | |
| C6 | H14 | sing | 1.08Å | 1.08Å | |
| C36 | H15 | sing | 1.08Å | 1.08Å | |
| C35 | H16 | sing | 1.08Å | 1.08Å | |
| C38 | H17 | sing | 1.05Å | 1.06Å | |
| C33 | H18 | sing | 1.08Å | 1.08Å | |
| C32 | H19 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3G | PG | O2G | 116.7° | 109.5° |
| O3G | PG | O1G | 115.8° | 109.5° |
| O3G | PG | O3B | 100.7° | 109.5° |
| O2G | PG | O1G | 102.9° | 109.4° |
| O2G | PG | O3B | 114.9° | 109.5° |
| PG | O2G | H1 | 109.5° | 114.0° |
| O1G | PG | O3B | 105.7° | 109.5° |
| PG | O1G | H2 | 109.5° | 114.0° |
| PG | O3B | PB | 133.5° | 134.0° |
| O2B | PB | O3B | 117.7° | 109.5° |
| O2B | PB | O1B | 110.6° | 109.5° |
| O2B | PB | O3A | 114.3° | 109.4° |
| O1A | PA | O3A | 115.5° | 109.5° |
| O1A | PA | O5' | 107.6° | 109.4° |
| O1A | PA | O2A | 113.4° | 109.5° |
| O3B | PB | O1B | 105.9° | 109.5° |
| O3B | PB | O3A | 99.7° | 109.5° |
| O1B | PB | O3A | 107.5° | 109.5° |
| PB | O1B | H3 | 109.5° | 114.0° |
| PB | O3A | PA | 129.9° | 134.0° |
| O5' | C5' | C4' | 105.2° | 109.4° |
| C5' | O5' | PA | 124.3° | 123.0° |
| O5' | C5' | H5 | 110.5° | 109.5° |
| O5' | C5' | H6 | 110.5° | 109.5° |
| C5' | C4' | C3' | 110.2° | 110.4° |
| C5' | C4' | O4' | 112.5° | 110.4° |
| C4' | C5' | H5 | 110.5° | 109.5° |
| C4' | C5' | H6 | 110.5° | 109.5° |
| C5' | C4' | H7 | 109.7° | 110.3° |
| O3A | PA | O5' | 101.4° | 109.5° |
| O3A | PA | O2A | 107.5° | 109.5° |
| O5' | PA | O2A | 110.6° | 109.4° |
| PA | O2A | H4 | 109.5° | 114.0° |
| O3' | C3' | C4' | 114.5° | 110.5° |
| O3' | C3' | C2' | 112.9° | 110.5° |
| O3' | C3' | H8 | 109.6° | 110.6° |
| C3' | O3' | H9 | 109.5° | 114.0° |
| C3' | C4' | O4' | 103.7° | 104.8° |
| C4' | C3' | C2' | 102.8° | 104.0° |
| C3' | C4' | H7 | 109.7° | 110.3° |
| C4' | C3' | H8 | 108.3° | 110.5° |
| C4' | O4' | C1' | 110.1° | 105.3° |
| O4' | C4' | H7 | 111.0° | 110.5° |
| C3' | C2' | C1' | 102.4° | 104.1° |
| C2' | C3' | H8 | 108.4° | 110.5° |
| C3' | C2' | H10 | 111.2° | 110.5° |
| C3' | C2' | H11 | 111.2° | 110.5° |
| O4' | C1' | C2' | 107.2° | 104.8° |
| O4' | C1' | N1 | 111.5° | 110.4° |
| O4' | C1' | H12 | 110.7° | 110.3° |
| C2' | C1' | N1 | 107.7° | 110.4° |
| C1' | C2' | H10 | 111.2° | 110.5° |
| C1' | C2' | H11 | 111.2° | 110.5° |
| C2' | C1' | H12 | 109.6° | 110.4° |
| C36 | C35 | C34 | 119.0° | 120.1° |
| C35 | C36 | C31 | 121.2° | 120.0° |
| C35 | C36 | H15 | 119.4° | 120.0° |
| C36 | C35 | H16 | 120.5° | 120.0° |
| C35 | C34 | C37 | 117.9° | 120.0° |
| C35 | C34 | C33 | 120.2° | 120.0° |
| C34 | C35 | H16 | 120.5° | 119.9° |
| C1' | N1 | C6 | 121.7° | 119.3° |
| C1' | N1 | C2 | 118.1° | 119.3° |
| N1 | C1' | H12 | 110.1° | 110.4° |
| C36 | C31 | C30 | 119.4° | 120.1° |
| C36 | C31 | C32 | 119.3° | 119.9° |
| C31 | C36 | H15 | 119.4° | 120.0° |
| C38 | C37 | C34 | 173.8° | 180.0° |
| C37 | C38 | H17 | 180.0° | 179.9° |
| C37 | C34 | C33 | 121.8° | 120.0° |
| C34 | C33 | C32 | 120.4° | 120.1° |
| C34 | C33 | H18 | 119.8° | 119.9° |
| N1 | C6 | C5 | 121.5° | 119.4° |
| C6 | N1 | C2 | 120.2° | 121.4° |
| N1 | C6 | H14 | 119.3° | 120.3° |
| C6 | C5 | C5M | 122.1° | 120.9° |
| C6 | C5 | C4 | 117.5° | 118.2° |
| C5 | C6 | H14 | 119.3° | 120.3° |
| N1 | C2 | O2 | 119.4° | 119.0° |
| N1 | C2 | N3 | 120.7° | 122.0° |
| C30 | C31 | C32 | 121.3° | 120.0° |
| C31 | C30 | C5M | 177.7° | 180.0° |
| C31 | C32 | C33 | 119.9° | 120.0° |
| C31 | C32 | H19 | 120.0° | 120.0° |
| C30 | C5M | C5 | 180.0° | 180.0° |
| C5M | C5 | C4 | 120.3° | 120.9° |
| C5 | C4 | N3 | 118.8° | 118.7° |
| C5 | C4 | O4 | 119.7° | 120.7° |
| C32 | C33 | H18 | 119.8° | 120.0° |
| C33 | C32 | H19 | 120.1° | 120.0° |
| O2 | C2 | N3 | 119.8° | 119.0° |
| C2 | N3 | C4 | 121.2° | 120.3° |
| C2 | N3 | H13 | 119.4° | 119.8° |
| N3 | C4 | O4 | 121.5° | 120.6° |
| C4 | N3 | H13 | 119.4° | 119.9° |
| H5 | C5' | H6 | 109.5° | 109.5° |
| H10 | C2' | H11 | 109.5° | 110.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3G | PG | O2G | O1G | 128.0° | 120.0° |
| O3G | PG | O2G | O3B | 117.6° | 120.0° |
| O3G | PG | O1G | O3B | 110.5° | 120.0° |
| O3G | PG | O3B | PB | 106.0° | 40.0° |
| O3G | PG | O2G | H1 | 0.0° | 60.0° |
| O3G | PG | O1G | H2 | 0.0° | 180.0° |
| O2G | PG | O1G | O3B | 120.9° | 120.0° |
| O2G | PG | O3B | PB | 20.4° | 160.0° |
| O2G | PG | O1G | H2 | 128.6° | 60.0° |
| O1G | PG | O3B | PB | 133.1° | 80.0° |
| O1G | PG | O2G | H1 | 128.0° | 60.0° |
| PG | O3B | PB | O2B | 44.5° | 45.0° |
| PG | O3B | PB | O1B | 168.8° | 75.0° |
| PG | O3B | PB | O3A | 79.7° | 165.0° |
| O3B | PG | O2G | H1 | 117.6° | 180.0° |
| O3B | PG | O1G | H2 | 110.5° | 59.9° |
| O2B | PB | O3B | O1B | 124.3° | 120.0° |
| O2B | PB | O3B | O3A | 124.2° | 120.0° |
| O2B | PB | O1B | O3A | 125.5° | 120.0° |
| O2B | PB | O3A | PA | 15.2° | 40.0° |
| O2B | PB | O1B | H3 | 0.0° | 180.0° |
| O1A | PA | O3A | PB | 27.9° | 40.0° |
| O1A | PA | O5' | C5' | 26.2° | 55.0° |
| O1A | PA | O3A | O5' | 116.1° | 120.0° |
| O1A | PA | O3A | O2A | 127.8° | 120.0° |
| O1A | PA | O5' | O2A | 124.4° | 120.0° |
| O1A | PA | O2A | H4 | 0.0° | 180.0° |
| O3B | PB | O1B | O3A | 105.9° | 120.0° |
| O3B | PB | O3A | PA | 111.3° | 160.0° |
| O3B | PB | O1B | H3 | 128.6° | 60.0° |
| O1B | PB | O3A | PA | 138.5° | 80.0° |
| PB | O3A | PA | O5' | 88.1° | 160.0° |
| PB | O3A | PA | O2A | 155.7° | 80.0° |
| O3A | PB | O1B | H3 | 125.5° | 60.0° |
| O5' | C5' | C4' | H5 | 119.3° | 120.0° |
| O5' | C5' | C4' | H6 | 119.3° | 120.0° |
| C5' | O5' | PA | O3A | 95.5° | 175.0° |
| C5' | O5' | PA | O2A | 150.6° | 65.0° |
| O5' | C5' | C4' | C3' | 51.4° | 175.0° |
| O5' | C5' | C4' | O4' | 63.7° | 69.6° |
| O5' | C5' | H5 | H6 | 122.0° | 120.0° |
| O5' | C5' | C4' | H7 | 172.2° | 52.8° |
| C4' | C5' | O5' | PA | 145.2° | 180.0° |
| C5' | C4' | C3' | O3' | 80.5° | 98.6° |
| C5' | C4' | C3' | O4' | 120.6° | 118.8° |
| C5' | C4' | C3' | H7 | 120.8° | 122.2° |
| C5' | C4' | O4' | H7 | 123.4° | 122.3° |
| C5' | C4' | C3' | C2' | 156.7° | 142.8° |
| C5' | C4' | O4' | C1' | 142.5° | 159.3° |
| C4' | C5' | H5 | H6 | 122.0° | 120.0° |
| C5' | C4' | C3' | H8 | 42.1° | 24.2° |
| O3A | PA | O5' | O2A | 113.9° | 120.0° |
| O3A | PA | O2A | H4 | 129.0° | 60.0° |
| O5' | PA | O2A | H4 | 121.1° | 60.0° |
| PA | O5' | C5' | H5 | 25.9° | 60.0° |
| PA | O5' | C5' | H6 | 95.5° | 60.0° |
| O3' | C3' | C4' | C2' | 122.8° | 118.6° |
| O3' | C3' | C4' | H8 | 122.6° | 122.8° |
| O3' | C3' | C4' | O4' | 158.9° | 142.6° |
| O3' | C3' | C2' | H8 | 121.6° | 122.8° |
| O3' | C3' | C2' | C1' | 158.5° | 118.6° |
| O3' | C3' | C4' | H7 | 40.4° | 23.7° |
| O3' | C3' | C2' | H10 | 82.6° | 122.7° |
| O3' | C3' | C2' | H11 | 39.6° | 0.0° |
| C3' | C4' | O4' | H7 | 117.7° | 118.9° |
| C4' | C3' | C2' | H8 | 114.5° | 118.6° |
| C3' | C4' | O4' | C1' | 23.5° | 40.5° |
| C4' | C3' | C2' | C1' | 34.6° | 0.0° |
| C3' | C4' | C5' | H5 | 67.9° | 65.0° |
| C3' | C4' | C5' | H6 | 170.7° | 55.0° |
| C4' | C3' | O3' | H9 | 180.0° | 180.0° |
| C4' | C3' | C2' | H10 | 153.5° | 118.6° |
| C4' | C3' | C2' | H11 | 84.3° | 118.7° |
| O4' | C4' | C3' | C2' | 36.1° | 23.9° |
| C4' | O4' | C1' | C2' | 1.4° | 40.5° |
| C4' | O4' | C1' | N1 | 119.0° | 159.3° |
| O4' | C4' | C5' | H5 | 177.0° | 50.4° |
| O4' | C4' | C5' | H6 | 55.6° | 170.4° |
| O4' | C4' | C3' | H8 | 78.5° | 94.6° |
| C4' | O4' | C1' | H12 | 118.0° | 78.3° |
| C3' | C2' | C1' | O4' | 21.3° | 24.0° |
| C3' | C2' | C1' | H10 | 118.8° | 118.7° |
| C3' | C2' | C1' | H11 | 118.8° | 118.7° |
| C3' | C2' | C1' | N1 | 98.9° | 142.8° |
| C2' | C3' | C4' | H7 | 82.5° | 95.0° |
| C2' | C3' | O3' | H9 | 62.8° | 65.4° |
| C3' | C2' | H10 | H11 | 123.3° | 122.7° |
| C3' | C2' | C1' | H12 | 141.4° | 94.8° |
| O4' | C1' | C2' | N1 | 120.1° | 118.9° |
| O4' | C1' | C2' | H12 | 120.2° | 118.7° |
| O4' | C1' | N1 | H12 | 123.3° | 122.3° |
| O4' | C1' | N1 | C6 | 34.5° | 129.9° |
| O4' | C1' | N1 | C2 | 147.9° | 50.4° |
| C1' | O4' | C4' | H7 | 94.1° | 78.4° |
| O4' | C1' | C2' | H10 | 140.1° | 94.7° |
| O4' | C1' | C2' | H11 | 97.6° | 142.6° |
| C2' | C1' | N1 | H12 | 119.4° | 122.4° |
| C2' | C1' | N1 | C6 | 82.8° | 114.8° |
| C2' | C1' | N1 | C2 | 94.8° | 65.0° |
| C1' | C2' | C3' | H8 | 80.0° | 118.6° |
| C1' | C2' | H10 | H11 | 123.3° | 122.6° |
| C36 | C35 | C34 | H16 | 180.0° | 179.9° |
| C35 | C36 | C31 | H15 | 180.0° | 180.0° |
| C36 | C35 | C34 | C37 | 177.9° | 180.0° |
| C36 | C35 | C34 | C33 | 0.7° | 0.0° |
| C35 | C36 | C31 | C30 | 178.8° | 180.0° |
| C35 | C36 | C31 | C32 | 1.8° | 0.3° |
| C34 | C35 | C36 | C31 | 0.9° | 0.0° |
| C35 | C34 | C37 | C38 | 176.2° | 172.8° |
| C35 | C34 | C37 | C33 | 177.2° | 180.0° |
| C35 | C34 | C33 | C32 | 1.3° | 0.2° |
| C34 | C35 | C36 | H15 | 179.1° | 180.0° |
| C35 | C34 | C33 | H18 | 178.7° | 180.0° |
| C1' | N1 | C6 | C2 | 177.5° | 179.8° |
| C1' | N1 | C6 | C5 | 178.7° | 179.7° |
| C1' | N1 | C2 | O2 | 1.3° | 0.0° |
| C1' | N1 | C2 | N3 | 179.5° | 179.9° |
| N1 | C1' | C2' | H10 | 20.0° | 24.1° |
| N1 | C1' | C2' | H11 | 142.3° | 98.5° |
| C1' | N1 | C6 | H14 | 1.3° | 0.0° |
| C36 | C31 | C30 | C32 | 176.9° | 179.7° |
| C36 | C31 | C30 | C5M | 134.2° | 121.6° |
| C36 | C31 | C32 | C33 | 1.2° | 0.5° |
| C31 | C36 | C35 | H16 | 179.1° | 179.9° |
| C36 | C31 | C32 | H19 | 178.8° | 179.8° |
| C38 | C37 | C34 | C33 | 6.7° | 7.2° |
| C37 | C34 | C33 | C32 | 178.4° | 179.8° |
| C37 | C34 | C35 | H16 | 2.1° | 0.1° |
| C34 | C37 | C38 | H17 | 101.6° | 173.2° |
| C37 | C34 | C33 | H18 | 1.6° | 0.0° |
| C34 | C33 | C32 | C31 | 0.4° | 0.5° |
| C34 | C33 | C32 | H18 | 180.0° | 179.8° |
| C33 | C34 | C35 | H16 | 179.3° | 179.9° |
| C34 | C33 | C32 | H19 | 179.7° | 179.8° |
| N1 | C6 | C5 | H14 | 180.0° | 179.7° |
| N1 | C6 | C5 | C5M | 178.2° | 180.0° |
| N1 | C6 | C5 | C4 | 0.3° | 0.5° |
| C6 | N1 | C2 | O2 | 178.9° | 179.7° |
| C6 | N1 | C2 | N3 | 1.9° | 0.2° |
| C6 | N1 | C1' | H12 | 157.8° | 7.6° |
| C5 | C6 | N1 | C2 | 1.2° | 0.5° |
| C6 | C5 | C5M | C30 | 92.3° | 58.1° |
| C6 | C5 | C5M | C4 | 177.9° | 179.5° |
| C6 | C5 | C4 | N3 | 1.2° | 0.2° |
| C6 | C5 | C4 | O4 | 179.2° | 179.7° |
| N1 | C2 | O2 | N3 | 179.2° | 179.9° |
| N1 | C2 | N3 | C4 | 1.0° | 0.1° |
| C2 | N1 | C1' | H12 | 24.6° | 172.6° |
| N1 | C2 | N3 | H13 | 179.0° | 179.9° |
| C2 | N1 | C6 | H14 | 178.8° | 179.8° |
| C31 | C30 | C5M | C5 | 165.2° | 180.0° |
| C30 | C31 | C32 | C33 | 178.1° | 179.8° |
| C30 | C31 | C36 | H15 | 1.2° | 0.0° |
| C30 | C31 | C32 | H19 | 1.9° | 0.0° |
| C32 | C31 | C30 | C5M | 49.0° | 58.1° |
| C31 | C32 | C33 | H19 | 180.0° | 179.7° |
| C32 | C31 | C36 | H15 | 178.2° | 179.8° |
| C31 | C32 | C33 | H18 | 179.6° | 179.7° |
| C30 | C5M | C5 | C4 | 85.5° | 121.4° |
| C5M | C5 | C4 | N3 | 179.2° | 179.7° |
| C5M | C5 | C4 | O4 | 1.3° | 0.2° |
| C5M | C5 | C6 | H14 | 1.8° | 0.3° |
| C5 | C4 | N3 | C2 | 0.6° | 0.1° |
| C5 | C4 | N3 | O4 | 179.5° | 179.9° |
| C5 | C4 | N3 | H13 | 179.5° | 179.9° |
| C4 | C5 | C6 | H14 | 179.7° | 179.8° |
| O2 | C2 | N3 | C4 | 179.9° | 180.0° |
| O2 | C2 | N3 | H13 | 0.2° | 0.0° |
| C2 | N3 | C4 | H13 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 179.9° | 180.0° |
| O4 | C4 | N3 | H13 | 0.1° | 0.0° |
| H5 | C5' | C4' | H7 | 52.9° | 172.8° |
| H6 | C5' | C4' | H7 | 68.5° | 67.2° |
| H7 | C4' | C3' | H8 | 162.9° | 146.4° |
| H8 | C3' | O3' | H9 | 58.1° | 57.3° |
| H8 | C3' | C2' | H10 | 38.9° | 0.1° |
| H8 | C3' | C2' | H11 | 161.2° | 122.8° |
| H10 | C2' | C1' | H12 | 99.7° | 146.5° |
| H11 | C2' | C1' | H12 | 22.6° | 23.9° |
| H15 | C36 | C35 | H16 | 0.9° | 0.1° |
| H18 | C33 | C32 | H19 | 0.4° | 0.0° |
