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Summary Geometry Related PDB entries

0PZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C2	C3	sing	1.53Å	1.49Å
C2	C1	sing	1.53Å	1.49Å
C3	C4	sing	1.53Å	1.49Å
C4	C5	sing	1.53Å	1.50Å
C5	O	sing	1.43Å	1.41Å
C5	C6	sing	1.53Å	1.42Å
O	C6	sing	1.43Å	1.42Å
C1	H1	sing	1.09Å	1.10Å
C1	H2	sing	1.09Å	1.10Å
C1	H3	sing	1.09Å	1.10Å
C2	H4	sing	1.09Å	1.10Å
C2	H5	sing	1.09Å	1.10Å
C3	H6	sing	1.09Å	1.10Å
C3	H7	sing	1.09Å	1.10Å
C4	H8	sing	1.09Å	1.10Å
C4	H9	sing	1.09Å	1.10Å
C5	H10	sing	1.09Å	1.10Å
C6	H11	sing	1.09Å	1.10Å
C6	H12	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C3	C2	C1	117.1°	109.5°
C2	C3	C4	117.7°	109.5°
C3	C2	H4	107.5°	109.5°
C3	C2	H5	107.5°	109.5°
C2	C3	H6	107.4°	109.5°
C2	C3	H7	107.4°	109.5°
C2	C1	H1	109.5°	109.5°
C2	C1	H2	109.5°	109.5°
C2	C1	H3	109.5°	109.5°
C1	C2	H4	107.6°	109.5°
C1	C2	H5	107.6°	109.5°
C3	C4	C5	118.5°	109.5°
C4	C3	H6	107.4°	109.5°
C4	C3	H7	107.4°	109.5°
C3	C4	H8	107.2°	109.5°
C3	C4	H9	107.2°	109.4°
C4	C5	O	117.8°	117.7°
C4	C5	C6	110.3°	117.8°
C5	C4	H8	107.2°	109.5°
C5	C4	H9	107.2°	109.5°
C4	C5	H10	117.4°	115.7°
O	C5	C6	60.0°	57.7°
C5	O	C6	60.2°	64.7°
O	C5	H10	119.2°	117.8°
C5	C6	O	59.8°	57.6°
C6	C5	H10	119.0°	117.9°
C5	C6	H11	120.1°	117.8°
C5	C6	H12	120.0°	117.7°
O	C6	H11	120.0°	117.8°
O	C6	H12	120.0°	117.8°
H1	C1	H2	109.4°	109.4°
H1	C1	H3	109.5°	109.5°
H2	C1	H3	109.5°	109.5°
H4	C2	H5	109.5°	109.5°
H6	C3	H7	109.5°	109.5°
H8	C4	H9	109.5°	109.5°
H11	C6	H12	109.5°	115.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C3	C2	C1	H4	121.1°	120.0°
C3	C2	C1	H5	121.1°	120.0°
C2	C3	C4	H6	121.2°	120.0°
C2	C3	C4	H7	121.2°	120.0°
C2	C3	C4	C5	157.9°	180.0°
C3	C2	C1	H1	180.0°	60.0°
C3	C2	C1	H2	60.0°	60.0°
C3	C2	C1	H3	60.0°	180.0°
C3	C2	H4	H5	116.5°	120.0°
C2	C3	H6	H7	116.3°	120.0°
C2	C3	C4	H8	36.6°	60.0°
C2	C3	C4	H9	80.9°	60.0°
C1	C2	C3	C4	127.0°	180.0°
C2	C1	H1	H2	120.0°	120.0°
C2	C1	H1	H3	120.0°	120.0°
C2	C1	H2	H3	120.0°	120.0°
C1	C2	H4	H5	116.6°	120.0°
C1	C2	C3	H6	111.8°	60.0°
C1	C2	C3	H7	5.8°	60.0°
C3	C4	C5	H8	121.3°	120.0°
C3	C4	C5	H9	121.3°	120.0°
C3	C4	C5	O	28.9°	116.3°
C3	C4	C5	C6	94.8°	177.6°
C4	C3	C2	H4	111.9°	60.0°
C4	C3	C2	H5	5.9°	60.0°
C4	C3	H6	H7	116.3°	120.0°
C3	C4	H8	H9	115.9°	120.0°
C3	C4	C5	H10	124.4°	30.5°
C4	C5	O	C6	98.6°	106.8°
C4	C5	O	H10	152.8°	146.1°
C4	C5	C6	H10	140.1°	146.4°
C5	C4	C3	H6	80.9°	60.0°
C5	C4	C3	H7	36.7°	60.0°
C5	C4	H8	H9	115.9°	120.1°
C4	C5	C6	H11	1.7°	0.0°
C4	C5	C6	H12	139.5°	146.3°
O	C5	C6	H10	108.8°	106.8°
O	C5	C4	H8	92.4°	3.6°
O	C5	C4	H9	150.2°	123.7°
O	C5	C6	H11	109.4°	106.8°
O	C5	C6	H12	109.4°	106.8°
C6	C5	C4	H8	26.5°	62.4°
C6	C5	C4	H9	143.9°	57.6°
C5	C6	H11	H12	144.8°	147.0°
O	C6	H11	H12	144.8°	147.0°
H1	C1	H2	H3	120.0°	120.0°
H1	C1	C2	H4	58.9°	60.0°
H1	C1	C2	H5	58.9°	180.0°
H2	C1	C2	H4	178.9°	NaN°
H2	C1	C2	H5	61.1°	60.0°
H3	C1	C2	H4	61.1°	60.0°
H3	C1	C2	H5	178.9°	60.0°
H4	C2	C3	H6	9.3°	180.0°
H4	C2	C3	H7	126.9°	60.0°
H5	C2	C3	H6	127.1°	60.0°
H5	C2	C3	H7	115.3°	180.0°
H6	C3	C4	H8	157.8°	180.0°
H6	C3	C4	H9	40.3°	60.0°
H7	C3	C4	H8	84.6°	60.0°
H7	C3	C4	H9	157.9°	180.0°
H8	C4	C5	H10	114.3°	150.5°
H9	C4	C5	H10	3.1°	89.5°
H10	C5	C6	H11	141.8°	146.4°
H10	C5	C6	H12	0.6°	0.1°

246905

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