0L6
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O3G | PG | doub | 1.48Å | 1.51Å | |
O2G | PG | sing | 1.61Å | 1.51Å | |
PG | O1G | sing | 1.61Å | 1.51Å | |
PG | O3B | sing | 1.61Å | 1.62Å | |
O1B | PB | doub | 1.48Å | 1.52Å | |
O2A | PA | doub | 1.48Å | 1.52Å | |
O3B | PB | sing | 1.61Å | 1.62Å | |
PB | O2B | sing | 1.61Å | 1.51Å | |
PB | O3A | sing | 1.61Å | 1.61Å | |
PA | O3A | sing | 1.61Å | 1.62Å | |
PA | O5' | sing | 1.61Å | 1.61Å | |
PA | O1A | sing | 1.61Å | 1.51Å | |
C5' | O5' | sing | 1.43Å | 1.42Å | |
C5' | C4' | sing | 1.53Å | 1.53Å | |
O3' | C3' | sing | 1.43Å | 1.43Å | |
C4' | C3' | sing | 1.55Å | 1.52Å | |
C4' | O4' | sing | 1.44Å | 1.43Å | |
C3' | C2' | sing | 1.55Å | 1.52Å | |
O4' | C1' | sing | 1.44Å | 1.44Å | |
C2' | C1' | sing | 1.54Å | 1.52Å | |
C1' | N1 | sing | 1.46Å | 1.47Å | |
C6 | N1 | sing | 1.47Å | 1.35Å | |
C6 | C5 | sing | 1.51Å | 1.41Å | |
N1 | C2 | sing | 1.35Å | 1.41Å | |
C31 | C30 | sing | 1.47Å | 1.48Å | |
C31 | C32 | sing | 1.53Å | 1.54Å | |
C30 | C29 | trip | 1.17Å | 1.17Å | |
C29 | C5 | sing | 1.43Å | 1.29Å | |
C5 | C4 | doub | 1.36Å | 1.36Å | |
C2 | O2 | doub | 1.22Å | 1.25Å | |
C2 | N3 | sing | 1.34Å | 1.34Å | |
C33 | C32 | sing | 1.53Å | 1.53Å | |
C33 | N34 | sing | 1.47Å | 1.45Å | |
C4 | N3 | sing | 1.38Å | 1.33Å | |
C4 | N4 | sing | 1.38Å | 1.36Å | |
N3 | H1 | sing | 0.97Å | 1.00Å | |
N4 | H2 | sing | 0.97Å | 1.00Å | |
N4 | H3 | sing | 0.97Å | 1.00Å | |
C31 | H4 | sing | 1.09Å | 1.10Å | |
C31 | H5 | sing | 1.09Å | 1.10Å | |
C32 | H6 | sing | 1.09Å | 1.10Å | |
C32 | H7 | sing | 1.09Å | 1.10Å | |
C33 | H8 | sing | 1.09Å | 1.10Å | |
C33 | H9 | sing | 1.09Å | 1.10Å | |
N34 | H10 | sing | 1.01Å | 1.00Å | |
N34 | H11 | sing | 1.01Å | 1.00Å | |
C6 | H13 | sing | 1.09Å | 1.10Å | |
C6 | H14 | sing | 1.09Å | 1.10Å | |
C1' | H15 | sing | 1.09Å | 1.10Å | |
C2' | H16 | sing | 1.09Å | 1.10Å | |
C2' | H17 | sing | 1.09Å | 1.10Å | |
C3' | H18 | sing | 1.09Å | 1.10Å | |
O3' | H19 | sing | 0.97Å | 0.95Å | |
C4' | H20 | sing | 1.09Å | 1.10Å | |
C5' | H21 | sing | 1.09Å | 1.10Å | |
C5' | H22 | sing | 1.09Å | 1.10Å | |
O1A | H23 | sing | 0.97Å | 0.95Å | |
O2B | H24 | sing | 0.97Å | 0.95Å | |
O1G | H25 | sing | 0.97Å | 0.95Å | |
O2G | H26 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O3G | PG | O2G | 115.6° | 109.5° |
O3G | PG | O1G | 112.4° | 109.5° |
O3G | PG | O3B | 104.1° | 109.4° |
O2G | PG | O1G | 113.5° | 109.5° |
O2G | PG | O3B | 106.0° | 109.5° |
PG | O2G | H26 | 109.5° | 113.9° |
O1G | PG | O3B | 103.7° | 109.5° |
PG | O1G | H25 | 109.5° | 114.0° |
PG | O3B | PB | 125.8° | 134.0° |
O1B | PB | O3B | 112.1° | 109.5° |
O1B | PB | O2B | 117.7° | 109.5° |
O1B | PB | O3A | 111.0° | 109.5° |
O2A | PA | O3A | 112.1° | 109.5° |
O2A | PA | O5' | 111.7° | 109.5° |
O2A | PA | O1A | 117.9° | 109.5° |
O3B | PB | O2B | 106.1° | 109.5° |
O3B | PB | O3A | 102.4° | 109.5° |
O2B | PB | O3A | 106.2° | 109.5° |
PB | O2B | H24 | 109.5° | 114.0° |
PB | O3A | PA | 125.2° | 134.0° |
O3A | PA | O5' | 98.6° | 109.5° |
O3A | PA | O1A | 106.9° | 109.5° |
O5' | PA | O1A | 107.8° | 109.5° |
PA | O5' | C5' | 119.6° | 123.0° |
PA | O1A | H23 | 109.5° | 114.0° |
O5' | C5' | C4' | 110.3° | 109.5° |
O5' | C5' | H21 | 109.3° | 109.5° |
O5' | C5' | H22 | 109.3° | 109.5° |
C5' | C4' | C3' | 113.7° | 110.4° |
C5' | C4' | O4' | 112.4° | 110.4° |
C5' | C4' | H20 | 108.4° | 110.4° |
C4' | C5' | H21 | 109.3° | 109.5° |
C4' | C5' | H22 | 109.3° | 109.4° |
O3' | C3' | C4' | 112.9° | 110.7° |
O3' | C3' | C2' | 112.1° | 110.5° |
O3' | C3' | H18 | 110.6° | 110.4° |
C3' | O3' | H19 | 109.5° | 114.0° |
C3' | C4' | O4' | 103.9° | 104.8° |
C4' | C3' | C2' | 102.3° | 104.0° |
C4' | C3' | H18 | 109.3° | 110.5° |
C3' | C4' | H20 | 108.6° | 110.4° |
C4' | O4' | C1' | 110.3° | 105.3° |
O4' | C4' | H20 | 109.7° | 110.4° |
C3' | C2' | C1' | 102.8° | 104.0° |
C3' | C2' | H16 | 111.1° | 110.5° |
C3' | C2' | H17 | 111.1° | 110.7° |
C2' | C3' | H18 | 109.3° | 110.5° |
O4' | C1' | C2' | 106.5° | 104.9° |
O4' | C1' | N1 | 112.6° | 110.4° |
O4' | C1' | H15 | 111.1° | 110.4° |
C2' | C1' | N1 | 105.9° | 110.3° |
C2' | C1' | H15 | 109.9° | 110.4° |
C1' | C2' | H16 | 111.1° | 110.5° |
C1' | C2' | H17 | 111.1° | 110.5° |
C1' | N1 | C6 | 121.3° | 120.7° |
C1' | N1 | C2 | 118.3° | 120.7° |
N1 | C1' | H15 | 110.7° | 110.3° |
N1 | C6 | C5 | 117.9° | 117.1° |
C6 | N1 | C2 | 120.4° | 118.7° |
N1 | C6 | H13 | 107.4° | 108.0° |
N1 | C6 | H14 | 107.3° | 107.9° |
C6 | C5 | C29 | 122.6° | 121.2° |
C6 | C5 | C4 | 120.3° | 117.7° |
C5 | C6 | H13 | 107.3° | 108.3° |
C5 | C6 | H14 | 107.3° | 107.5° |
N1 | C2 | O2 | 119.6° | 118.9° |
N1 | C2 | N3 | 119.8° | 122.2° |
C30 | C31 | C32 | 108.2° | 109.5° |
C31 | C30 | C29 | 177.2° | 180.0° |
C30 | C31 | H4 | 109.8° | 109.5° |
C30 | C31 | H5 | 109.8° | 109.5° |
C31 | C32 | C33 | 111.0° | 109.5° |
C32 | C31 | H4 | 109.8° | 109.4° |
C32 | C31 | H5 | 109.8° | 109.4° |
C31 | C32 | H6 | 109.1° | 109.4° |
C31 | C32 | H7 | 109.1° | 109.4° |
C30 | C29 | C5 | 180.0° | 179.9° |
C29 | C5 | C4 | 117.1° | 121.1° |
C5 | C4 | N3 | 120.7° | 120.8° |
C5 | C4 | N4 | 119.4° | 119.6° |
O2 | C2 | N3 | 120.6° | 118.9° |
C2 | N3 | C4 | 121.0° | 123.4° |
C2 | N3 | H1 | 119.5° | 118.3° |
C32 | C33 | N34 | 109.9° | 109.4° |
C33 | C32 | H6 | 109.1° | 109.5° |
C33 | C32 | H7 | 109.1° | 109.5° |
C32 | C33 | H8 | 109.4° | 109.5° |
C32 | C33 | H9 | 109.4° | 109.5° |
N34 | C33 | H8 | 109.4° | 109.5° |
N34 | C33 | H9 | 109.3° | 109.5° |
C33 | N34 | H10 | 109.5° | 111.0° |
C33 | N34 | H11 | 109.5° | 111.0° |
N3 | C4 | N4 | 119.8° | 119.6° |
C4 | N3 | H1 | 119.5° | 118.3° |
C4 | N4 | H2 | 109.5° | 120.0° |
C4 | N4 | H3 | 109.5° | 120.0° |
H2 | N4 | H3 | 109.5° | 120.0° |
H4 | C31 | H5 | 109.5° | 109.5° |
H6 | C32 | H7 | 109.5° | 109.5° |
H8 | C33 | H9 | 109.5° | 109.5° |
H10 | N34 | H11 | 109.5° | 111.0° |
H13 | C6 | H14 | 109.5° | 107.7° |
H16 | C2' | H17 | 109.5° | 110.4° |
H21 | C5' | H22 | 109.5° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O3G | PG | O2G | O1G | 132.1° | 120.0° |
O3G | PG | O2G | O3B | 114.8° | 120.0° |
O3G | PG | O1G | O3B | 111.8° | 120.0° |
O3G | PG | O3B | PB | 121.2° | 40.0° |
O3G | PG | O1G | H25 | 0.0° | 180.0° |
O3G | PG | O2G | H26 | 0.0° | 60.1° |
O2G | PG | O1G | O3B | 114.6° | 120.0° |
O2G | PG | O3B | PB | 1.2° | 160.0° |
O2G | PG | O1G | H25 | 133.6° | 60.0° |
O1G | PG | O3B | PB | 121.0° | 80.0° |
O1G | PG | O2G | H26 | 132.1° | 59.9° |
PG | O3B | PB | O1B | 27.8° | 45.0° |
PG | O3B | PB | O2B | 157.6° | 75.0° |
PG | O3B | PB | O3A | 91.3° | 165.0° |
O3B | PG | O1G | H25 | 111.8° | 60.0° |
O3B | PG | O2G | H26 | 114.8° | 179.9° |
O1B | PB | O3B | O2B | 129.8° | 120.0° |
O1B | PB | O3B | O3A | 119.1° | 120.0° |
O1B | PB | O2B | O3A | 125.0° | 120.0° |
O1B | PB | O3A | PA | 13.1° | 40.0° |
O1B | PB | O2B | H24 | 0.0° | 180.0° |
O2A | PA | O3A | PB | 15.7° | 40.0° |
O2A | PA | O3A | O5' | 117.7° | 120.0° |
O2A | PA | O3A | O1A | 130.7° | 120.0° |
O2A | PA | O5' | O1A | 131.1° | 120.0° |
O2A | PA | O5' | C5' | 33.5° | 55.0° |
O2A | PA | O1A | H23 | 0.0° | 180.0° |
O3B | PB | O2B | O3A | 108.5° | 120.0° |
O3B | PB | O3A | PA | 106.7° | 160.0° |
O3B | PB | O2B | H24 | 126.5° | 60.0° |
O2B | PB | O3A | PA | 142.2° | 80.0° |
PB | O3A | PA | O5' | 102.0° | 160.0° |
PB | O3A | PA | O1A | 146.4° | 80.0° |
O3A | PB | O2B | H24 | 125.0° | 60.0° |
O3A | PA | O5' | O1A | 110.9° | 120.0° |
O3A | PA | O5' | C5' | 84.5° | 175.0° |
O3A | PA | O1A | H23 | 127.3° | 60.0° |
PA | O5' | C5' | C4' | 139.9° | 180.0° |
PA | O5' | C5' | H21 | 19.8° | 60.0° |
PA | O5' | C5' | H22 | 99.9° | 60.0° |
O5' | PA | O1A | H23 | 127.6° | 60.0° |
O1A | PA | O5' | C5' | 164.6° | 65.0° |
O5' | C5' | C4' | H21 | 120.1° | 120.1° |
O5' | C5' | C4' | H22 | 120.1° | 120.0° |
O5' | C5' | C4' | C3' | 62.7° | 175.0° |
O5' | C5' | C4' | O4' | 55.0° | 69.6° |
O5' | C5' | C4' | H20 | 176.5° | 52.7° |
O5' | C5' | H21 | H22 | 119.6° | 120.0° |
C5' | C4' | C3' | O3' | 79.9° | 98.5° |
C5' | C4' | C3' | O4' | 122.5° | 118.9° |
C5' | C4' | C3' | H20 | 120.7° | 122.3° |
C5' | C4' | O4' | H20 | 120.8° | 122.3° |
C5' | C4' | C3' | C2' | 159.4° | 142.8° |
C5' | C4' | O4' | C1' | 148.6° | 159.3° |
C5' | C4' | C3' | H18 | 43.7° | 24.2° |
C4' | C5' | H21 | H22 | 119.6° | 120.0° |
O3' | C3' | C4' | C2' | 120.6° | 118.7° |
O3' | C3' | C4' | H18 | 123.6° | 122.7° |
O3' | C3' | C4' | O4' | 157.6° | 142.6° |
O3' | C3' | C2' | H18 | 122.9° | 122.6° |
O3' | C3' | C2' | C1' | 155.7° | 118.8° |
O3' | C3' | C2' | H16 | 85.3° | 0.2° |
O3' | C3' | C2' | H17 | 36.8° | 122.5° |
O3' | C3' | C4' | H20 | 40.8° | 23.8° |
C3' | C4' | O4' | H20 | 115.9° | 118.8° |
C4' | C3' | C2' | H18 | 115.8° | 118.6° |
C3' | C4' | O4' | C1' | 25.3° | 40.4° |
C4' | C3' | C2' | C1' | 34.5° | 0.0° |
C4' | C3' | C2' | H16 | 153.4° | 118.7° |
C4' | C3' | C2' | H17 | 84.4° | 118.7° |
C4' | C3' | O3' | H19 | 180.0° | 176.1° |
C3' | C4' | C5' | H21 | 57.4° | 54.9° |
C3' | C4' | C5' | H22 | 177.1° | 65.0° |
O4' | C4' | C3' | C2' | 36.9° | 23.9° |
C4' | O4' | C1' | C2' | 3.1° | 40.5° |
C4' | O4' | C1' | N1 | 118.7° | 159.3° |
C4' | O4' | C1' | H15 | 116.5° | 78.5° |
O4' | C4' | C3' | H18 | 78.9° | 94.7° |
O4' | C4' | C5' | H21 | 175.1° | 170.4° |
O4' | C4' | C5' | H22 | 65.2° | 50.4° |
C3' | C2' | C1' | O4' | 20.3° | 24.0° |
C3' | C2' | C1' | H16 | 118.9° | 118.6° |
C3' | C2' | C1' | H17 | 118.9° | 118.8° |
C3' | C2' | C1' | N1 | 99.8° | 142.9° |
C3' | C2' | C1' | H15 | 140.7° | 94.9° |
C3' | C2' | H16 | H17 | 123.1° | 122.8° |
C2' | C3' | O3' | H19 | 65.1° | 61.4° |
C2' | C3' | C4' | H20 | 79.8° | 94.9° |
O4' | C1' | C2' | N1 | 120.0° | 118.9° |
O4' | C1' | C2' | H15 | 120.4° | 118.9° |
O4' | C1' | N1 | H15 | 125.0° | 122.3° |
O4' | C1' | N1 | C6 | 25.5° | 127.9° |
O4' | C1' | N1 | C2 | 155.0° | 51.5° |
O4' | C1' | C2' | H16 | 139.2° | 142.6° |
O4' | C1' | C2' | H17 | 98.7° | 94.9° |
C1' | O4' | C4' | H20 | 90.7° | 78.4° |
C2' | C1' | N1 | H15 | 119.0° | 122.2° |
C2' | C1' | N1 | C6 | 90.4° | 116.6° |
C2' | C1' | N1 | C2 | 89.1° | 64.0° |
C1' | C2' | H16 | H17 | 123.1° | 122.6° |
C1' | C2' | C3' | H18 | 81.3° | 118.7° |
C1' | N1 | C6 | C2 | 179.5° | 179.4° |
C1' | N1 | C6 | C5 | 179.0° | 180.0° |
C1' | N1 | C2 | O2 | 0.7° | 0.3° |
C1' | N1 | C2 | N3 | 179.4° | 180.0° |
C1' | N1 | C6 | H13 | 59.8° | 57.6° |
C1' | N1 | C6 | H14 | 57.8° | 58.6° |
N1 | C1' | C2' | H16 | 19.1° | 98.5° |
N1 | C1' | C2' | H17 | 141.3° | 24.0° |
N1 | C6 | C5 | H13 | 121.2° | 122.3° |
N1 | C6 | C5 | H14 | 121.2° | 121.6° |
N1 | C6 | C5 | C29 | 179.2° | 179.7° |
N1 | C6 | C5 | C4 | 1.0° | 0.3° |
C6 | N1 | C2 | O2 | 179.8° | 179.7° |
C6 | N1 | C2 | N3 | 0.1° | 0.5° |
N1 | C6 | H13 | H14 | 116.2° | 116.3° |
C6 | N1 | C1' | H15 | 150.6° | 5.6° |
C5 | C6 | N1 | C2 | 0.5° | 0.6° |
C6 | C5 | C29 | C30 | 26.0° | 30.4° |
C6 | C5 | C29 | C4 | 178.3° | 180.0° |
C6 | C5 | C4 | N3 | 1.0° | 0.0° |
C6 | C5 | C4 | N4 | 179.5° | 180.0° |
C5 | C6 | H13 | H14 | 116.2° | 116.0° |
N1 | C2 | O2 | N3 | 179.8° | 179.8° |
N1 | C2 | N3 | C4 | 0.1° | 0.2° |
N1 | C2 | N3 | H1 | 180.0° | 179.7° |
C2 | N1 | C6 | H13 | 120.7° | 121.9° |
C2 | N1 | C6 | H14 | 121.7° | 122.0° |
C2 | N1 | C1' | H15 | 29.9° | 173.8° |
C30 | C31 | C32 | H4 | 119.8° | 120.0° |
C30 | C31 | C32 | H5 | 119.8° | 120.0° |
C31 | C30 | C29 | C5 | 89.0° | 159.3° |
C30 | C31 | C32 | C33 | 56.6° | 180.0° |
C30 | C31 | H4 | H5 | 120.6° | 120.0° |
C30 | C31 | C32 | H6 | 176.9° | 60.0° |
C30 | C31 | C32 | H7 | 63.6° | 60.0° |
C32 | C31 | C30 | C29 | 108.4° | 129.0° |
C31 | C32 | C33 | H6 | 120.2° | 120.0° |
C31 | C32 | C33 | H7 | 120.2° | 120.0° |
C31 | C32 | C33 | N34 | 151.3° | 180.0° |
C32 | C31 | H4 | H5 | 120.6° | 120.0° |
C31 | C32 | H6 | H7 | 119.3° | 120.0° |
C31 | C32 | C33 | H8 | 31.2° | 60.0° |
C31 | C32 | C33 | H9 | 88.7° | 60.0° |
C30 | C29 | C5 | C4 | 155.7° | 149.6° |
C29 | C30 | C31 | H4 | 131.9° | 111.1° |
C29 | C30 | C31 | H5 | 11.4° | 9.0° |
C29 | C5 | C4 | N3 | 179.3° | 180.0° |
C29 | C5 | C4 | N4 | 1.1° | 0.1° |
C29 | C5 | C6 | H13 | 58.0° | 58.0° |
C29 | C5 | C6 | H14 | 59.6° | 58.1° |
C5 | C4 | N3 | C2 | 0.5° | 0.1° |
C5 | C4 | N3 | N4 | 179.6° | 179.9° |
C5 | C4 | N3 | H1 | 179.5° | 180.0° |
C5 | C4 | N4 | H2 | 180.0° | 180.0° |
C5 | C4 | N4 | H3 | 60.0° | 0.1° |
C4 | C5 | C6 | H13 | 120.3° | 122.0° |
C4 | C5 | C6 | H14 | 122.2° | 121.9° |
O2 | C2 | N3 | C4 | 179.8° | 180.0° |
O2 | C2 | N3 | H1 | 0.2° | 0.1° |
C2 | N3 | C4 | H1 | 180.0° | 179.9° |
C2 | N3 | C4 | N4 | 179.9° | 180.0° |
C32 | C33 | N34 | H8 | 120.1° | 120.0° |
C32 | C33 | N34 | H9 | 120.0° | 120.0° |
C33 | C32 | C31 | H4 | 63.2° | 60.0° |
C33 | C32 | C31 | H5 | 176.4° | 60.0° |
C33 | C32 | H6 | H7 | 119.3° | 120.0° |
C32 | C33 | H8 | H9 | 119.8° | 120.0° |
C32 | C33 | N34 | H10 | 180.0° | 56.1° |
C32 | C33 | N34 | H11 | 60.0° | 180.0° |
N34 | C33 | C32 | H6 | 88.4° | 60.0° |
N34 | C33 | C32 | H7 | 31.1° | 60.0° |
N34 | C33 | H8 | H9 | 119.8° | 120.0° |
C33 | N34 | H10 | H11 | 120.0° | 123.9° |
N3 | C4 | N4 | H2 | 0.4° | 0.1° |
N3 | C4 | N4 | H3 | 120.5° | 180.0° |
N4 | C4 | N3 | H1 | 0.1° | 0.1° |
C4 | N4 | H2 | H3 | 120.0° | 179.9° |
H4 | C31 | C32 | H6 | 57.0° | 180.0° |
H4 | C31 | C32 | H7 | 176.6° | 60.0° |
H5 | C31 | C32 | H6 | 63.3° | 60.0° |
H5 | C31 | C32 | H7 | 56.2° | 180.0° |
H6 | C32 | C33 | H8 | 151.5° | 180.0° |
H6 | C32 | C33 | H9 | 31.6° | 59.9° |
H7 | C32 | C33 | H8 | 89.0° | 60.0° |
H7 | C32 | C33 | H9 | 151.1° | 180.0° |
H8 | C33 | N34 | H10 | 59.9° | 63.9° |
H8 | C33 | N34 | H11 | 179.9° | 60.0° |
H9 | C33 | N34 | H10 | 60.0° | 176.1° |
H9 | C33 | N34 | H11 | 60.0° | 60.0° |
H15 | C1' | C2' | H16 | 100.4° | 23.7° |
H15 | C1' | C2' | H17 | 21.7° | 146.2° |
H16 | C2' | C3' | H18 | 37.6° | 122.7° |
H17 | C2' | C3' | H18 | 159.8° | 0.1° |
H18 | C3' | O3' | H19 | 57.1° | 61.2° |
H18 | C3' | C4' | H20 | 164.4° | 146.5° |
H20 | C4' | C5' | H21 | 63.4° | 67.4° |
H20 | C4' | C5' | H22 | 56.3° | 172.7° |