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0L5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1GPGdoub1.48Å1.51Å
O2GPGsing1.61Å1.52Å
PGO3Gsing1.61Å1.51Å
PGO3Bsing1.61Å1.62Å
O1BPBdoub1.48Å1.52Å
O2APAdoub1.48Å1.51Å
O3BPBsing1.61Å1.62Å
PBO2Bsing1.61Å1.51Å
PBO3Asing1.61Å1.62Å
PAO3Asing1.61Å1.62Å
PAO5'sing1.61Å1.61Å
PAO1Asing1.61Å1.51Å
C5'O5'sing1.43Å1.43Å
C5'C4'sing1.53Å1.53Å
O3'C3'sing1.43Å1.44Å
C4'C3'sing1.54Å1.52Å
C4'O4'sing1.44Å1.44Å
C3'C2'sing1.55Å1.52Å
O4'C1'sing1.44Å1.43Å
C2'C1'sing1.54Å1.53Å
C1'N1sing1.46Å1.48Å
C6N1sing1.36Å1.34Å
C6C5doub1.37Å1.39Å
C31C30sing1.47Å1.48Å
C31C32sing1.53Å1.53Å
N1C2sing1.34Å1.41Å
C30C29trip1.17Å1.19Å
C29C5sing1.43Å1.30Å
C5C4sing1.47Å1.48Å
C32C33sing1.53Å1.53Å
C2O2doub1.22Å1.26Å
C2N3sing1.34Å1.34Å
C33N34sing1.46Å1.46Å
C4N3sing1.35Å1.34Å
C4O4doub1.22Å1.25Å
O36C35doub1.21Å1.22Å
N34C35sing1.35Å1.33Å
C35C37sing1.51Å1.52Å
C38C37sing1.53Å1.53Å
C38C39sing1.53Å1.54Å
O46C45sing1.43Å1.43Å
C39C40sing1.53Å1.52Å
C45C44sing1.53Å1.52Å
C44C43sing1.53Å1.52Å
C43C42sing1.53Å1.53Å
C42C41sing1.53Å1.53Å
C40C41sing1.53Å1.53Å
C37H1sing1.09Å1.10Å
C37H2sing1.09Å1.10Å
C38H3sing1.09Å1.10Å
C38H4sing1.09Å1.10Å
C39H5sing1.09Å1.10Å
C39H6sing1.09Å1.10Å
C40H7sing1.09Å1.10Å
C40H8sing1.09Å1.10Å
C41H9sing1.09Å1.10Å
C41H10sing1.09Å1.10Å
C42H11sing1.09Å1.10Å
C42H12sing1.09Å1.10Å
C43H13sing1.09Å1.10Å
C43H14sing1.09Å1.10Å
C44H15sing1.09Å1.10Å
C44H16sing1.09Å1.10Å
C45H17sing1.09Å1.10Å
C45H18sing1.09Å1.10Å
O46H19sing0.97Å0.95Å
N34H20sing0.97Å1.00Å
C33H21sing1.09Å1.10Å
C33H22sing1.09Å1.10Å
C32H23sing1.09Å1.10Å
C32H24sing1.09Å1.10Å
C31H25sing1.09Å1.10Å
C31H26sing1.09Å1.10Å
C6H27sing1.08Å1.08Å
N3H28sing0.97Å1.00Å
C1'H29sing1.09Å1.10Å
C4'H30sing1.09Å1.10Å
C3'H31sing1.09Å1.10Å
O3'H32sing0.97Å0.95Å
C2'H33sing1.09Å1.10Å
C2'H34sing1.09Å1.10Å
C5'H35sing1.09Å1.10Å
C5'H36sing1.09Å1.10Å
O1AH37sing0.97Å0.95Å
O2BH38sing0.97Å0.95Å
O3GH39sing0.97Å0.95Å
O2GH40sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1GPGO2G114.8°109.5°
O1GPGO3G113.0°109.5°
O1GPGO3B104.2°109.5°
O2GPGO3G112.8°109.5°
O2GPGO3B107.2°109.5°
PGO2GH40109.5°114.0°
O3GPGO3B103.5°109.5°
PGO3GH39109.5°114.0°
PGO3BPB128.2°134.0°
O1BPBO3B114.3°109.5°
O1BPBO2B118.4°109.5°
O1BPBO3A111.6°109.4°
O2APAO3A110.2°109.5°
O2APAO5'111.5°109.5°
O2APAO1A119.1°109.5°
O3BPBO2B106.1°109.5°
O3BPBO3A100.3°109.5°
O2BPBO3A104.1°109.5°
PBO2BH38109.5°114.0°
PBO3APA127.0°134.0°
O3APAO5'98.2°109.5°
O3APAO1A105.6°109.5°
O5'PAO1A110.1°109.5°
PAO5'C5'120.7°123.0°
PAO1AH37109.5°114.0°
O5'C5'C4'110.1°109.5°
O5'C5'H35109.3°109.5°
O5'C5'H36109.3°109.5°
C5'C4'C3'113.2°110.3°
C5'C4'O4'111.7°110.3°
C5'C4'H30108.6°110.4°
C4'C5'H35109.3°109.5°
C4'C5'H36109.3°109.4°
O3'C3'C4'113.5°110.5°
O3'C3'C2'111.9°110.4°
O3'C3'H31110.2°110.6°
C3'O3'H32109.5°114.0°
C3'C4'O4'104.9°104.8°
C4'C3'C2'102.6°104.0°
C3'C4'H30108.6°110.4°
C4'C3'H31109.1°110.5°
C4'O4'C1'110.5°105.3°
O4'C4'H30109.8°110.5°
C3'C2'C1'103.9°104.0°
C2'C3'H31109.1°110.6°
C3'C2'H33110.9°110.5°
C3'C2'H34110.8°110.5°
O4'C1'C2'106.5°104.9°
O4'C1'N1109.8°110.3°
O4'C1'H29111.3°110.4°
C2'C1'N1108.5°110.4°
C2'C1'H29109.9°110.4°
C1'C2'H33110.8°110.6°
C1'C2'H34110.9°110.5°
C1'N1C6121.3°119.3°
C1'N1C2118.9°119.3°
N1C1'H29110.6°110.4°
N1C6C5121.0°119.5°
C6N1C2119.8°121.4°
N1C6H27119.5°120.3°
C6C5C29121.8°120.9°
C6C5C4117.6°118.2°
C5C6H27119.5°120.2°
C30C31C32111.5°109.5°
C31C30C29177.7°180.0°
C30C31H25109.0°109.5°
C30C31H26109.0°109.5°
C31C32C33112.0°109.4°
C31C32H23108.8°109.5°
C31C32H24108.8°109.5°
C32C31H25109.0°109.5°
C32C31H26109.0°109.5°
N1C2O2119.1°119.1°
N1C2N3121.1°121.9°
C30C29C5179.9°179.9°
C29C5C4120.6°120.9°
C5C4N3119.0°118.7°
C5C4O4120.6°120.6°
C32C33N34114.2°109.4°
C32C33H21108.3°109.4°
C32C33H22108.3°109.5°
C33C32H23108.8°109.5°
C33C32H24108.8°109.5°
O2C2N3119.7°119.0°
C2N3C4121.4°120.3°
C2N3H28119.3°119.8°
C33N34C35122.4°120.0°
C33N34H20118.8°120.1°
N34C33H21108.3°109.5°
N34C33H22108.3°109.5°
N3C4O4120.4°120.7°
C4N3H28119.3°119.9°
O36C35N34121.9°120.0°
O36C35C37120.6°120.0°
N34C35C37117.5°120.0°
C35N34H20118.8°120.0°
C35C37C38109.6°109.5°
C35C37H1109.4°109.4°
C35C37H2109.5°109.5°
C37C38C39114.0°109.5°
C38C37H1109.4°109.5°
C38C37H2109.4°109.4°
C37C38H3108.3°109.5°
C37C38H4108.3°109.4°
C38C39C40115.0°109.4°
C39C38H3108.3°109.5°
C39C38H4108.3°109.4°
C38C39H5108.1°109.5°
C38C39H6108.1°109.5°
O46C45C44109.8°109.4°
O46C45H17109.4°109.5°
O46C45H18109.4°109.4°
C45O46H19109.5°114.0°
C39C40C41112.1°109.4°
C40C39H5108.1°109.5°
C40C39H6108.1°109.4°
C39C40H7108.8°109.5°
C39C40H8108.8°109.4°
C45C44C43111.1°109.4°
C45C44H15109.0°109.5°
C45C44H16109.1°109.4°
C44C45H17109.4°109.5°
C44C45H18109.4°109.5°
C44C43C42112.1°109.4°
C44C43H13108.8°109.5°
C44C43H14108.8°109.5°
C43C44H15109.1°109.5°
C43C44H16109.1°109.5°
C43C42C41110.3°109.5°
C43C42H11109.3°109.5°
C43C42H12109.2°109.5°
C42C43H13108.8°109.5°
C42C43H14108.8°109.4°
C42C41C40113.5°109.5°
C42C41H9108.4°109.5°
C42C41H10108.4°109.5°
C41C42H11109.3°109.5°
C41C42H12109.3°109.4°
C41C40H7108.8°109.5°
C41C40H8108.8°109.5°
C40C41H9108.5°109.5°
C40C41H10108.4°109.5°
H1C37H2109.5°109.5°
H3C38H4109.5°109.5°
H5C39H6109.4°109.5°
H7C40H8109.5°109.5°
H9C41H10109.5°109.4°
H11C42H12109.5°109.5°
H13C43H14109.5°109.5°
H15C44H16109.5°109.5°
H17C45H18109.5°109.5°
H21C33H22109.5°109.5°
H23C32H24109.5°109.5°
H25C31H26109.5°109.4°
H33C2'H34109.4°110.5°
H35C5'H36109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1GPGO2GO3G131.5°120.0°
O1GPGO2GO3B115.2°120.0°
O1GPGO3GO3B112.1°120.0°
O1GPGO3BPB114.0°40.0°
O1GPGO3GH390.0°180.0°
O1GPGO2GH400.0°60.0°
O2GPGO3GO3B115.5°120.0°
O2GPGO3BPB8.1°160.0°
O2GPGO3GH39132.3°60.0°
O3GPGO3BPB127.5°80.0°
O3GPGO2GH40131.5°60.0°
PGO3BPBO1B24.5°45.0°
PGO3BPBO2B156.9°75.0°
PGO3BPBO3A95.1°165.0°
O3BPGO3GH39112.1°60.0°
O3BPGO2GH40115.2°180.0°
O1BPBO3BO2B132.4°120.1°
O1BPBO3BO3A119.6°119.9°
O1BPBO2BO3A124.6°120.0°
O1BPBO3APA16.6°40.1°
O1BPBO2BH380.0°180.0°
O2APAO3APB13.3°39.9°
O2APAO3AO5'116.6°120.0°
O2APAO3AO1A129.9°120.0°
O2APAO5'O1A134.5°120.0°
O2APAO5'C5'29.3°55.0°
O2APAO1AH370.0°179.9°
O3BPBO2BO3A105.4°120.0°
O3BPBO3APA104.9°160.0°
O3BPBO2BH38130.0°60.0°
O2BPBO3APA145.4°79.9°
PBO3APAO5'103.3°160.0°
PBO3APAO1A143.1°80.1°
O3APBO2BH38124.6°60.0°
O3APAO5'O1A110.0°120.0°
O3APAO5'C5'86.2°175.0°
O3APAO1AH37124.4°59.9°
PAO5'C5'C4'138.2°180.0°
PAO5'C5'H3518.1°60.0°
PAO5'C5'H36101.7°60.0°
O5'PAO1AH37130.6°60.1°
O1APAO5'C5'163.8°65.0°
O5'C5'C4'H35120.1°120.0°
O5'C5'C4'H36120.1°120.0°
O5'C5'C4'C3'57.4°175.0°
O5'C5'C4'O4'60.8°69.7°
O5'C5'C4'H30178.1°52.7°
O5'C5'H35H36119.7°120.1°
C5'C4'C3'O3'83.8°98.6°
C5'C4'C3'O4'122.0°118.7°
C5'C4'C3'H30120.7°122.3°
C5'C4'O4'H30120.4°122.3°
C5'C4'C3'C2'155.2°142.8°
C5'C4'O4'C1'145.6°159.3°
C5'C4'C3'H3139.5°24.1°
C4'C5'H35H36119.8°120.0°
O3'C3'C4'C2'121.0°118.5°
O3'C3'C4'H31123.3°122.7°
O3'C3'C4'O4'154.2°142.6°
O3'C3'C2'H31122.2°122.8°
O3'C3'C2'C1'153.4°118.7°
O3'C3'C4'H3036.9°23.6°
O3'C3'C2'H3387.4°0.1°
O3'C3'C2'H3434.3°122.7°
C3'C4'O4'H30116.6°118.9°
C4'C3'C2'H31115.7°118.7°
C3'C4'O4'C1'22.6°40.6°
C4'C3'C2'C1'31.4°0.1°
C4'C3'O3'H32180.0°179.9°
C4'C3'C2'H33150.5°118.7°
C4'C3'C2'H3487.7°118.7°
C3'C4'C5'H3562.7°55.0°
C3'C4'C5'H36177.4°65.0°
O4'C4'C3'C2'33.2°24.1°
C4'O4'C1'C2'2.3°40.5°
C4'O4'C1'N1119.6°159.3°
C4'O4'C1'H29117.5°78.4°
O4'C4'C3'H3182.5°94.6°
O4'C4'C5'H35179.2°170.3°
O4'C4'C5'H3659.3°50.3°
C3'C2'C1'O4'18.8°23.9°
C3'C2'C1'H33119.1°118.7°
C3'C2'C1'H34119.1°118.6°
C3'C2'C1'N199.4°142.7°
C3'C2'C1'H29139.5°95.0°
C2'C3'C4'H3084.1°94.9°
C2'C3'O3'H3264.4°65.4°
C3'C2'H33H34122.5°122.6°
O4'C1'C2'N1118.2°118.8°
O4'C1'C2'H29120.7°118.9°
O4'C1'N1H29123.3°122.3°
O4'C1'N1C628.8°128.0°
O4'C1'N1C2152.9°52.0°
C1'O4'C4'H3094.0°78.4°
O4'C1'C2'H33137.9°142.6°
O4'C1'C2'H34100.3°94.7°
C2'C1'N1H29120.7°122.3°
C2'C1'N1C687.3°116.6°
C2'C1'N1C291.0°63.4°
C1'C2'C3'H3184.3°118.5°
C1'C2'H33H34122.6°122.7°
C1'N1C6C2178.3°180.0°
C1'N1C6C5179.8°180.0°
C1'N1C2O21.4°0.0°
C1'N1C2N3179.2°180.0°
C1'N1C6H270.2°0.0°
N1C1'C2'H3319.7°98.6°
N1C1'C2'H34141.5°24.1°
N1C6C5H27180.0°180.0°
N1C6C5C29179.7°180.0°
N1C6C5C41.5°0.3°
C6N1C2O2179.7°180.0°
C6N1C2N30.9°0.0°
C6N1C1'H29152.0°5.7°
C5C6N1C21.5°0.0°
C6C5C29C30173.6°16.9°
C6C5C29C4178.1°179.7°
C6C5C4N30.9°0.5°
C6C5C4O4179.7°179.8°
C30C31C32H25120.3°120.0°
C30C31C32H26120.3°120.0°
C31C30C29C5149.2°176.0°
C30C31C32C3384.7°180.0°
C30C31C32H23154.9°60.0°
C30C31C32H2435.6°60.1°
C30C31H25H26119.1°120.0°
C32C31C30C29166.4°166.9°
C31C32C33H23120.4°120.0°
C31C32C33H24120.4°120.0°
C31C32C33N34175.9°180.0°
C31C32C33H2155.2°60.0°
C31C32C33H2263.4°60.0°
C31C32H23H24118.8°120.0°
C32C31H25H26119.1°120.0°
N1C2O2N3179.4°180.0°
N1C2N3C40.2°0.3°
C2N1C6H27178.5°180.0°
N1C2N3H28179.8°180.0°
C2N1C1'H2929.7°174.3°
C30C29C5C48.3°162.9°
C29C30C31H2573.3°73.1°
C29C30C31H2646.1°46.9°
C29C5C4N3179.0°179.7°
C29C5C4O41.5°0.0°
C29C5C6H270.4°0.0°
C5C4N3C20.2°0.5°
C5C4N3O4179.4°179.7°
C4C5C6H27178.5°179.8°
C5C4N3H28179.8°179.8°
C32C33N34H21120.7°119.9°
C32C33N34H22120.7°120.1°
C32C33N34C35113.8°180.0°
C32C33N34H2066.2°0.1°
C32C33H21H22117.8°120.0°
C33C32H23H24118.8°120.0°
C33C32C31H2535.6°60.0°
C33C32C31H26155.0°60.0°
O2C2N3C4179.7°179.7°
O2C2N3H280.4°0.0°
C2N3C4H28180.0°179.7°
C2N3C4O4179.7°179.8°
C33N34C35O3614.3°0.0°
C33N34C35H20180.0°179.9°
C33N34C35C37165.8°179.8°
N34C33H21H22117.8°120.0°
N34C33C32H2363.7°60.0°
N34C33C32H2455.5°60.0°
O4C4N3H280.4°0.1°
O36C35N34C37179.9°179.8°
O36C35C37C3859.7°0.0°
O36C35C37H1179.7°120.0°
O36C35C37H260.3°120.0°
O36C35N34H20165.6°179.9°
N34C35C37C38120.1°179.7°
N34C35C37H10.1°59.8°
N34C35C37H2119.8°60.2°
C35N34C33H21125.5°60.0°
C35N34C33H226.9°60.0°
C35C37C38H1120.0°120.0°
C35C37C38H2120.0°120.1°
C35C37C38C39146.4°179.9°
C35C37H1H2120.0°120.1°
C35C37C38H325.7°60.0°
C35C37C38H493.0°60.0°
C37C35N34H2014.2°0.3°
C37C38C39H3120.6°120.0°
C37C38C39H4120.7°120.0°
C37C38C39C4065.1°180.0°
C38C37H1H2119.9°120.0°
C37C38H3H4118.0°120.0°
C37C38C39H555.7°60.0°
C37C38C39H6174.1°60.1°
C38C39C40H5120.8°120.1°
C38C39C40H6120.8°119.9°
C38C39C40C41119.4°180.0°
C39C38C37H193.6°60.0°
C39C38C37H226.3°60.0°
C39C38H3H4117.9°120.0°
C38C39H5H6117.5°120.0°
C38C39C40H71.0°60.0°
C38C39C40H8120.2°60.1°
O46C45C44H17120.0°120.0°
O46C45C44H18120.0°120.0°
O46C45C44C43179.0°180.0°
O46C45C44H1558.8°60.0°
O46C45C44H1660.7°60.0°
O46C45H17H18119.8°120.0°
C39C40C41C4234.5°180.0°
C39C40C41H7120.4°120.0°
C39C40C41H8120.4°119.9°
C40C39C38H3174.3°59.9°
C40C39C38H455.6°60.1°
C40C39H5H6117.5°119.9°
C39C40H7H8118.8°120.0°
C39C40C41H9155.1°60.0°
C39C40C41H1086.1°60.0°
C45C44C43H15120.2°120.0°
C45C44C43H16120.3°120.0°
C45C44C43C42167.9°180.0°
C45C44C43H1371.7°60.0°
C45C44C43H1447.5°60.0°
C45C44H15H16119.3°120.0°
C44C45H17H18119.9°120.0°
C44C45O46H19180.0°180.0°
C44C43C42H13120.4°120.0°
C44C43C42H14120.4°120.0°
C44C43C42C41179.5°180.0°
C44C43C42H1160.4°60.0°
C44C43C42H1259.4°60.0°
C44C43H13H14118.8°120.1°
C43C44H15H16119.3°120.1°
C43C44C45H1760.9°60.0°
C43C44C45H1859.0°60.0°
C43C42C41H11120.1°120.0°
C43C42C41H12120.1°120.0°
C43C42C41C40164.1°180.0°
C43C42C41H975.2°60.0°
C43C42C41H1043.5°60.0°
C43C42H11H12119.6°120.0°
C42C43H13H14118.8°120.0°
C42C43C44H1547.7°60.0°
C42C43C44H1671.9°60.0°
C42C41C40H9120.6°120.0°
C42C41C40H10120.6°120.0°
C42C41C40H7154.9°60.0°
C42C41C40H885.9°60.1°
C42C41H9H10118.1°120.0°
C41C42H11H12119.6°119.9°
C41C42C43H1359.1°60.0°
C41C42C43H1460.1°60.0°
C41C40C39H5119.7°60.0°
C41C40C39H61.4°60.0°
C41C40H7H8118.8°120.0°
C40C41H9H10118.1°120.0°
C40C41C42H1144.0°60.0°
C40C41C42H1275.7°60.0°
H1C37C38H3145.8°179.9°
H1C37C38H427.0°60.0°
H2C37C38H394.3°60.1°
H2C37C38H4147.0°179.9°
H3C38C39H564.9°180.0°
H3C38C39H653.4°60.0°
H4C38C39H5176.4°60.0°
H4C38C39H665.3°180.0°
H5C39C40H7119.9°179.9°
H5C39C40H80.6°60.0°
H6C39C40H7121.8°60.0°
H6C39C40H8119.0°180.0°
H7C40C41H984.5°180.0°
H7C40C41H1034.3°60.0°
H8C40C41H934.7°59.9°
H8C40C41H10153.5°179.9°
H9C41C42H11164.6°179.9°
H9C41C42H1244.9°60.0°
H10C41C42H1176.6°60.1°
H10C41C42H12163.7°180.0°
H11C42C43H13179.2°180.0°
H11C42C43H1460.0°60.0°
H12C42C43H1361.0°59.9°
H12C42C43H14179.8°180.0°
H13C43C44H15168.1°180.0°
H13C43C44H1648.6°59.9°
H14C43C44H1572.7°59.9°
H14C43C44H16167.8°180.0°
H15C44C45H17178.8°180.0°
H15C44C45H1861.2°59.9°
H16C44C45H1759.3°60.0°
H16C44C45H18179.3°180.0°
H17C45O46H1960.0°60.0°
H18C45O46H1959.9°60.1°
H20N34C33H2154.6°120.0°
H20N34C33H22173.2°120.0°
H21C33C32H23175.6°180.0°
H21C33C32H2465.2°60.0°
H22C33C32H2357.0°60.0°
H22C33C32H24176.2°179.9°
H23C32C31H2584.8°180.0°
H23C32C31H2634.6°60.0°
H24C32C31H25155.9°59.9°
H24C32C31H2684.7°179.9°
H29C1'C2'H33101.3°23.7°
H29C1'C2'H3420.4°146.4°
H30C4'C3'H31160.2°146.4°
H30C4'C5'H3558.0°67.3°
H30C4'C5'H3661.9°172.7°
H31C3'O3'H3257.3°57.4°
H31C3'C2'H3334.8°122.7°
H31C3'C2'H34156.6°0.0°

222036

PDB entries from 2024-07-03

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