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0L4

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1GPGdoub1.48Å1.51Å
O2GPGsing1.61Å1.51Å
PGO3Tsing1.61Å1.51Å
PGO3Bsing1.61Å1.61Å
O2BPBdoub1.48Å1.51Å
O2APAdoub1.48Å1.51Å
O3BPBsing1.61Å1.61Å
PBO1Bsing1.61Å1.51Å
PBO3Asing1.61Å1.61Å
C5'O5'sing1.43Å1.42Å
C5'C4'sing1.53Å1.53Å
PAO3Asing1.61Å1.61Å
PAO5'sing1.61Å1.61Å
PAO1Asing1.61Å1.51Å
O3'C3'sing1.43Å1.43Å
C4'C3'sing1.55Å1.52Å
C4'O4'sing1.44Å1.43Å
C3'C2'sing1.55Å1.52Å
O4'C1'sing1.44Å1.43Å
N47C46sing1.47Å1.45Å
C2'C1'sing1.54Å1.52Å
C1'N9sing1.46Å1.49Å
C46C45sing1.53Å1.52Å
C8N9sing1.37Å1.35ÅAromatic
C8C7doub1.36Å1.37ÅAromatic
N9C4sing1.37Å1.36ÅAromatic
C45C44sing1.53Å1.53Å
C7C42sing1.43Å1.34Å
C7C5sing1.47Å1.47ÅAromatic
C4N3doub1.33Å1.36ÅAromatic
C4C5sing1.41Å1.47ÅAromatic
C42C43trip1.17Å1.18Å
C43C44sing1.47Å1.47Å
N3C2sing1.32Å1.35ÅAromatic
C5C6doub1.40Å1.48ÅAromatic
C2N1doub1.32Å1.35ÅAromatic
C6N1sing1.33Å1.35ÅAromatic
C6N6sing1.38Å1.35Å
O1AH1sing0.97Å0.95Å
O2GH2sing0.97Å0.95Å
O3TH3sing0.97Å0.95Å
O1BH4sing0.97Å0.95Å
C5'H5sing1.09Å1.10Å
C5'H6sing1.09Å1.10Å
C4'H7sing1.09Å1.10Å
C1'H8sing1.09Å1.10Å
C2'H9sing1.09Å1.10Å
C2'H10sing1.09Å1.10Å
C3'H11sing1.09Å1.10Å
O3'H12sing0.97Å0.95Å
C8H13sing1.08Å1.08Å
N6H14sing0.97Å1.00Å
N6H15sing0.97Å1.00Å
C2H16sing1.08Å1.08Å
C44H17sing1.09Å1.10Å
C44H18sing1.09Å1.10Å
C45H19sing1.09Å1.10Å
C45H20sing1.09Å1.10Å
C46H21sing1.09Å1.10Å
C46H22sing1.09Å1.10Å
N47H23sing1.01Å1.00Å
N47H24sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1GPGO2G116.1°109.5°
O1GPGO3T112.9°109.5°
O1GPGO3B103.1°109.5°
O2GPGO3T114.1°109.5°
O2GPGO3B105.4°109.4°
PGO2GH2109.5°114.0°
O3TPGO3B103.4°109.5°
PGO3TH3109.5°114.0°
PGO3BPB124.2°134.0°
O2BPBO3B111.5°109.4°
O2BPBO1B119.2°109.5°
O2BPBO3A110.1°109.5°
O2APAO3A111.7°109.5°
O2APAO5'110.9°109.4°
O2APAO1A117.3°109.5°
O3BPBO1B106.7°109.5°
O3BPBO3A101.9°109.4°
O1BPBO3A106.0°109.5°
PBO1BH4109.5°114.0°
PBO3APA124.4°134.0°
O5'C5'C4'112.2°109.5°
C5'O5'PA120.2°123.0°
O5'C5'H5108.8°109.5°
O5'C5'H6108.8°109.5°
C5'C4'C3'112.5°110.4°
C5'C4'O4'112.7°110.4°
C4'C5'H5108.8°109.5°
C4'C5'H6108.8°109.5°
C5'C4'H7108.3°110.4°
O3APAO5'100.3°109.5°
O3APAO1A107.7°109.5°
O5'PAO1A107.6°109.5°
PAO1AH1109.5°114.0°
O3'C3'C4'112.2°110.6°
O3'C3'C2'110.9°110.5°
O3'C3'H11111.1°110.6°
C3'O3'H12109.5°114.0°
C3'C4'O4'105.1°104.8°
C4'C3'C2'102.9°104.1°
C3'C4'H7108.5°110.3°
C4'C3'H11109.7°110.5°
C4'O4'C1'109.3°105.3°
O4'C4'H7109.6°110.5°
C3'C2'C1'104.2°104.1°
C3'C2'H9110.8°110.5°
C3'C2'H10110.8°110.7°
C2'C3'H11109.8°110.5°
O4'C1'C2'107.5°104.8°
O4'C1'N9110.0°110.4°
O4'C1'H8112.2°110.4°
N47C46C45110.1°109.5°
N47C46H21109.3°109.5°
N47C46H22109.3°109.5°
C46N47H23109.5°111.0°
C46N47H24109.5°111.0°
C2'C1'N9104.6°110.4°
C2'C1'H8110.8°110.5°
C1'C2'H9110.8°110.5°
C1'C2'H10110.8°110.5°
C1'N9C8123.7°124.8°
C1'N9C4124.0°124.8°
N9C1'H8111.4°110.3°
C46C45C44111.5°109.5°
C46C45H19109.0°109.5°
C46C45H20109.0°109.5°
C45C46H21109.3°109.4°
C45C46H22109.3°109.5°
N9C8C7107.1°109.6°
C8N9C4112.2°110.3°
N9C8H13126.4°125.2°
C8C7C42125.1°126.7°
C8C7C5111.0°106.5°
C7C8H13126.4°125.2°
N9C4N3134.5°134.1°
N9C4C5108.3°107.4°
C45C44C43109.7°109.5°
C45C44H17109.4°109.5°
C45C44H18109.4°109.5°
C44C45H19109.0°109.5°
C44C45H20109.0°109.5°
C42C7C5123.9°126.8°
C7C42C43178.0°180.0°
C7C5C4101.3°106.2°
C7C5C6139.3°135.1°
N3C4C5117.2°118.5°
C4N3C2121.0°120.7°
C4C5C6119.3°118.7°
C42C43C44180.0°180.0°
C43C44H17109.4°109.5°
C43C44H18109.4°109.5°
N3C2N1124.1°122.7°
N3C2H16117.9°118.7°
C5C6N1116.7°118.4°
C5C6N6120.4°120.8°
C2N1C6121.8°121.0°
N1C2H16117.9°118.7°
N1C6N6122.9°120.8°
C6N6H14109.5°120.0°
C6N6H15109.5°120.0°
H5C5'H6109.5°109.5°
H9C2'H10109.5°110.4°
H14N6H15109.4°120.0°
H17C44H18109.5°109.4°
H19C45H20109.5°109.5°
H21C46H22109.5°109.5°
H23N47H24109.5°111.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1GPGO2GO3T133.9°120.0°
O1GPGO2GO3B113.3°120.0°
O1GPGO3TO3B110.7°120.0°
O1GPGO3BPB108.6°45.0°
O1GPGO2GH292.5°60.0°
O1GPGO3TH30.0°180.0°
O2GPGO3TO3B113.9°119.9°
O2GPGO3BPB13.5°165.0°
O2GPGO3TH3135.3°60.0°
O3TPGO3BPB133.6°75.0°
O3TPGO2GH2133.6°60.1°
PGO3BPBO2B11.3°45.0°
PGO3BPBO1B143.1°75.0°
PGO3BPBO3A106.1°165.0°
O3BPGO2GH220.9°180.0°
O3BPGO3TH3110.7°60.0°
O2BPBO3BO1B131.7°120.0°
O2BPBO3BO3A117.4°120.0°
O2BPBO1BO3A124.7°120.0°
O2BPBO3APA25.8°40.1°
O2BPBO1BH40.0°179.9°
O2APAO3APB10.3°40.0°
O2APAO5'C5'51.8°55.0°
O2APAO3AO5'117.5°120.0°
O2APAO3AO1A130.1°120.0°
O2APAO5'O1A129.4°120.0°
O2APAO1AH10.0°180.0°
O3BPBO1BO3A108.0°120.0°
O3BPBO3APA92.7°160.0°
O3BPBO1BH4127.3°60.0°
O1BPBO3APA155.9°80.0°
PBO3APAO5'107.2°159.9°
PBO3APAO1A140.4°80.1°
O3APBO1BH4124.7°60.0°
O5'C5'C4'H5120.4°120.0°
O5'C5'C4'H6120.4°120.0°
C5'O5'PAO3A66.3°175.0°
C5'O5'PAO1A178.7°65.0°
O5'C5'C4'C3'75.6°175.0°
O5'C5'C4'O4'43.0°69.7°
O5'C5'H5H6118.8°120.0°
O5'C5'C4'H7164.5°52.8°
C4'C5'O5'PA130.2°180.0°
C5'C4'C3'O3'84.2°98.6°
C5'C4'C3'O4'123.0°118.8°
C5'C4'C3'H7119.8°122.3°
C5'C4'O4'H7120.8°122.4°
C5'C4'C3'C2'156.6°142.8°
C5'C4'O4'C1'150.1°159.3°
C4'C5'H5H6118.8°120.0°
C5'C4'C3'H1139.8°24.2°
O3APAO5'O1A112.4°120.0°
O3APAO1AH1127.0°59.9°
O5'PAO1AH1125.7°60.1°
PAO5'C5'H59.8°60.0°
PAO5'C5'H6109.4°60.0°
O3'C3'C4'C2'119.2°118.7°
O3'C3'C4'H11124.0°122.7°
O3'C3'C4'O4'152.8°142.6°
O3'C3'C2'H11123.1°122.7°
O3'C3'C2'C1'147.5°118.7°
O3'C3'C4'H735.7°23.7°
O3'C3'C2'H993.4°0.1°
O3'C3'C2'H1028.3°122.6°
C3'C4'O4'H7116.4°118.8°
C4'C3'C2'H11116.8°118.6°
C3'C4'O4'C1'27.2°40.5°
C4'C3'C2'C1'27.3°0.0°
C3'C4'C5'H544.8°65.0°
C3'C4'C5'H6164.0°55.0°
C4'C3'C2'H9146.4°118.6°
C4'C3'C2'H1091.8°118.7°
C4'C3'O3'H12180.0°180.0°
O4'C4'C3'C2'33.6°23.9°
C4'O4'C1'C2'9.5°40.5°
C4'O4'C1'N9122.8°159.4°
O4'C4'C5'H5163.4°50.3°
O4'C4'C5'H677.4°170.4°
C4'O4'C1'H8112.6°78.4°
O4'C4'C3'H1183.2°94.7°
C3'C2'C1'O4'12.0°24.0°
C3'C2'C1'H9119.1°118.6°
C3'C2'C1'H10119.1°118.8°
C3'C2'C1'N9104.9°142.8°
C2'C3'C4'H783.6°95.0°
C3'C2'C1'H8135.0°94.9°
C3'C2'H9H10122.5°122.8°
C2'C3'O3'H1265.6°65.3°
O4'C1'C2'N9116.9°118.9°
O4'C1'C2'H8123.0°118.9°
O4'C1'N9H8125.1°122.3°
O4'C1'N9C823.4°23.9°
O4'C1'N9C4159.4°156.5°
C1'O4'C4'H789.2°78.3°
O4'C1'C2'H9131.2°142.6°
O4'C1'C2'H10107.1°94.8°
N47C46C45H21120.1°120.0°
N47C46C45H22120.1°120.0°
N47C46C45C44175.7°180.0°
N47C46C45H1964.0°60.1°
N47C46C45H2055.4°60.0°
N47C46H21H22119.7°120.0°
C46N47H23H24120.0°124.0°
C2'C1'N9H8119.8°122.4°
C2'C1'N9C891.7°91.5°
C2'C1'N9C485.4°88.1°
C1'C2'H9H10122.4°122.6°
C1'C2'C3'H1189.5°118.6°
C1'N9C8C4177.4°179.7°
C1'N9C8C7178.2°180.0°
C1'N9C4N32.3°0.8°
C1'N9C4C5178.3°179.8°
N9C1'C2'H914.3°98.5°
N9C1'C2'H10136.0°24.0°
C1'N9C8H131.8°0.0°
C46C45C44H19120.3°120.0°
C46C45C44H20120.3°120.0°
C46C45C44C4338.0°180.0°
C46C45C44H17158.0°60.0°
C46C45C44H1882.1°60.0°
C46C45H19H20119.1°120.0°
C45C46H21H22119.7°120.0°
C45C46N47H23180.0°56.0°
C45C46N47H2460.0°180.0°
N9C8C7H13180.0°180.0°
N9C8C7C42179.1°180.0°
N9C8C7C50.4°0.0°
C8N9C4N3179.7°179.5°
C8N9C4C50.9°0.4°
C8N9C1'H8148.6°146.1°
C7C8N9C40.8°0.3°
C8C7C42C5179.4°180.0°
C8C7C5C40.2°0.3°
C8C7C42C43119.2°133.7°
C8C7C5C6179.7°180.0°
N9C4C5C70.6°0.4°
N9C4N3C5179.3°179.0°
N9C4N3C2179.3°179.5°
N9C4C5C6179.2°179.8°
C4N9C1'H834.3°34.2°
C4N9C8H13179.2°179.7°
C45C44C43C4299.4°24.5°
C45C44C43H17120.0°120.1°
C45C44C43H18120.0°120.0°
C45C44H17H18119.9°120.0°
C44C45H19H20119.1°120.0°
C44C45C46H2155.6°60.0°
C44C45C46H2264.2°60.0°
C42C7C5C4179.6°179.7°
C7C42C43C4444.4°141.8°
C42C7C5C60.2°0.0°
C42C7C8H130.9°0.0°
C7C5C4N3179.9°179.7°
C7C5C4C6179.9°179.8°
C5C7C42C4361.4°46.3°
C7C5C6N1179.9°180.0°
C7C5C6N60.0°0.0°
C5C7C8H13179.6°180.0°
N3C4C5C60.2°0.6°
C4N3C2N10.2°0.3°
C4N3C2H16179.8°179.7°
C5C4N3C20.0°0.6°
C4C5C6N10.3°0.3°
C4C5C6N6179.8°179.7°
C42C43C44H17140.6°95.6°
C42C43C44H1820.7°144.5°
C43C44H17H18119.9°120.0°
C43C44C45H1982.3°60.0°
C43C44C45H20158.3°60.0°
N3C2N1H16180.0°180.0°
N3C2N1C60.1°0.0°
C5C6N1C20.2°0.0°
C5C6N1N6179.9°180.0°
C5C6N6H14179.9°0.0°
C5C6N6H1560.2°180.0°
C2N1C6N6180.0°179.9°
N1C6N6H140.0°180.0°
N1C6N6H15120.0°0.0°
C6N1C2H16179.9°180.0°
C6N6H14H15120.0°180.0°
H5C5'C4'H775.1°172.7°
H6C5'C4'H744.1°67.2°
H7C4'C3'H11159.6°146.4°
H8C1'C2'H9105.9°23.7°
H8C1'C2'H1015.8°146.3°
H9C2'C3'H1129.7°122.8°
H10C2'C3'H11151.4°0.1°
H11C3'O3'H1256.7°57.3°
H17C44C45H1937.7°180.0°
H17C44C45H2081.7°60.0°
H18C44C45H19157.6°60.0°
H18C44C45H2038.2°180.0°
H19C45C46H21175.9°180.0°
H19C45C46H2256.1°60.0°
H20C45C46H2164.7°60.0°
H20C45C46H22175.5°180.0°
H21C46N47H2359.9°64.0°
H21C46N47H2460.1°60.0°
H22C46N47H2359.9°176.0°
H22C46N47H24179.9°60.0°

224931

PDB entries from 2024-09-11

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