0KZ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.44Å | |
| C7' | C4' | sing | 1.53Å | 1.51Å | |
| C7' | C6' | sing | 1.55Å | 1.56Å | |
| C4' | C5' | sing | 1.53Å | 1.58Å | |
| C4' | C3' | sing | 1.54Å | 1.58Å | |
| C4' | C6' | sing | 1.54Å | 1.55Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| C3' | C2' | sing | 1.54Å | 1.54Å | |
| OP1 | P | doub | 1.48Å | 1.48Å | |
| C6' | C1' | sing | 1.54Å | 1.58Å | |
| C2' | C1' | sing | 1.55Å | 1.57Å | |
| O5' | P | sing | 1.61Å | 1.60Å | |
| C1' | N1 | sing | 1.47Å | 1.54Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| N1 | C6 | sing | 1.37Å | 1.43Å | |
| N1 | C2 | sing | 1.34Å | 1.43Å | |
| O2 | C2 | doub | 1.22Å | 1.22Å | |
| C6 | C5 | doub | 1.35Å | 1.34Å | |
| C2 | N3 | sing | 1.35Å | 1.42Å | |
| C5 | C7 | sing | 1.51Å | 1.49Å | |
| C5 | C4 | sing | 1.42Å | 1.46Å | |
| N3 | C4 | sing | 1.35Å | 1.41Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| N3 | H1 | sing | 0.97Å | 1.00Å | |
| C6 | H2 | sing | 1.08Å | 1.08Å | |
| C7 | H3 | sing | 1.09Å | 1.10Å | |
| C7 | H4 | sing | 1.09Å | 1.10Å | |
| C7 | H5 | sing | 1.09Å | 1.10Å | |
| OP2 | H7 | sing | 0.97Å | 0.95Å | |
| C5' | H8 | sing | 1.09Å | 1.10Å | |
| C5' | H9 | sing | 1.09Å | 1.10Å | |
| C6' | H10 | sing | 1.09Å | 1.10Å | |
| C7' | H11 | sing | 1.09Å | 1.10Å | |
| C7' | H12 | sing | 1.09Å | 1.10Å | |
| C1' | H13 | sing | 1.09Å | 1.10Å | |
| C2' | H14 | sing | 1.09Å | 1.10Å | |
| C2' | H15 | sing | 1.09Å | 1.10Å | |
| C3' | H16 | sing | 1.09Å | 1.10Å | |
| O3' | H17 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 13.99Å | |
| OP3 | H19 | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 104.5° | 110.5° |
| O3' | C3' | C2' | 116.5° | 109.6° |
| O3' | C3' | H16 | 111.3° | 110.6° |
| C3' | O3' | H17 | 109.5° | 114.0° |
| C4' | C7' | C6' | 60.6° | 59.9° |
| C7' | C4' | C5' | 134.9° | 119.3° |
| C7' | C4' | C3' | 130.7° | 118.2° |
| C7' | C4' | C6' | 61.4° | 60.8° |
| C4' | C7' | H11 | 119.9° | 117.5° |
| C4' | C7' | H12 | 119.9° | 117.5° |
| C7' | C6' | C4' | 58.0° | 59.3° |
| C7' | C6' | C1' | 103.3° | 117.8° |
| C7' | C6' | H10 | 124.7° | 120.4° |
| C6' | C7' | H11 | 119.9° | 117.3° |
| C6' | C7' | H12 | 119.9° | 118.0° |
| C5' | C4' | C3' | 94.3° | 117.4° |
| C5' | C4' | C6' | 109.3° | 121.4° |
| C4' | C5' | O5' | 122.2° | 109.5° |
| C4' | C5' | H8 | 106.2° | 109.4° |
| C4' | C5' | H9 | 106.2° | 109.5° |
| C3' | C4' | C6' | 107.2° | 106.6° |
| C4' | C3' | C2' | 104.7° | 104.4° |
| C4' | C3' | H16 | 109.4° | 110.5° |
| C4' | C6' | C1' | 102.8° | 106.6° |
| C4' | C6' | H10 | 125.0° | 121.3° |
| C5' | O5' | P | 121.5° | 123.0° |
| O5' | C5' | H8 | 106.2° | 109.5° |
| O5' | C5' | H9 | 106.2° | 109.5° |
| C3' | C2' | C1' | 106.5° | 103.0° |
| C3' | C2' | H14 | 110.2° | 111.0° |
| C3' | C2' | H15 | 110.2° | 110.4° |
| C2' | C3' | H16 | 109.9° | 111.0° |
| OP1 | P | O5' | 112.5° | 109.5° |
| OP1 | P | OP2 | 122.6° | 109.5° |
| OP1 | P | OP3 | 53.8° | 109.5° |
| C6' | C1' | C2' | 108.8° | 104.2° |
| C6' | C1' | N1 | 107.0° | 110.5° |
| C1' | C6' | H10 | 124.3° | 117.4° |
| C6' | C1' | H13 | 112.5° | 110.5° |
| C2' | C1' | N1 | 102.4° | 110.5° |
| C2' | C1' | H13 | 112.5° | 110.6° |
| C1' | C2' | H14 | 110.2° | 110.8° |
| C1' | C2' | H15 | 110.2° | 110.8° |
| O5' | P | OP2 | 105.9° | 109.5° |
| O5' | P | OP3 | 91.5° | 109.5° |
| C1' | N1 | C6 | 121.7° | 119.7° |
| C1' | N1 | C2 | 119.3° | 119.7° |
| N1 | C1' | H13 | 113.0° | 110.4° |
| P | OP2 | H7 | 109.5° | 114.0° |
| OP2 | P | OP3 | 85.1° | 109.4° |
| C6 | N1 | C2 | 119.0° | 120.7° |
| N1 | C6 | C5 | 126.3° | 119.6° |
| N1 | C6 | H2 | 116.9° | 120.2° |
| N1 | C2 | O2 | 124.6° | 119.5° |
| N1 | C2 | N3 | 114.0° | 120.9° |
| O2 | C2 | N3 | 121.4° | 119.5° |
| C6 | C5 | C7 | 120.9° | 120.4° |
| C6 | C5 | C4 | 117.4° | 119.1° |
| C5 | C6 | H2 | 116.8° | 120.2° |
| C2 | N3 | C4 | 127.3° | 120.3° |
| C2 | N3 | H1 | 116.3° | 119.8° |
| C7 | C5 | C4 | 121.7° | 120.5° |
| C5 | C7 | H3 | 109.5° | 109.5° |
| C5 | C7 | H4 | 109.5° | 109.5° |
| C5 | C7 | H5 | 109.5° | 109.5° |
| C5 | C4 | N3 | 116.0° | 119.4° |
| C5 | C4 | O4 | 124.6° | 120.3° |
| N3 | C4 | O4 | 119.4° | 120.3° |
| C4 | N3 | H1 | 116.3° | 119.9° |
| H3 | C7 | H4 | 109.5° | 109.4° |
| H3 | C7 | H5 | 109.5° | 109.5° |
| H4 | C7 | H5 | 109.4° | 109.5° |
| H8 | C5' | H9 | 109.5° | 109.5° |
| H11 | C7' | H12 | 109.5° | 115.5° |
| H14 | C2' | H15 | 109.4° | 110.7° |
| P | OP3 | H19 | 90.0° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C4' | C7' | 87.9° | 29.7° |
| O3' | C3' | C4' | C5' | 93.6° | 125.0° |
| O3' | C3' | C4' | C2' | 122.9° | 117.8° |
| O3' | C3' | C4' | H16 | 119.3° | 122.7° |
| O3' | C3' | C4' | C6' | 154.7° | 95.0° |
| O3' | C3' | C2' | H16 | 127.7° | 122.5° |
| O3' | C3' | C2' | C1' | 134.7° | 81.2° |
| O3' | C3' | C2' | H14 | 105.7° | 37.4° |
| O3' | C3' | C2' | H15 | 15.2° | 160.4° |
| C4' | C7' | C6' | H11 | 109.6° | 107.5° |
| C4' | C7' | C6' | H12 | 109.7° | 107.2° |
| C7' | C4' | C5' | C3' | 178.4° | 154.3° |
| C7' | C4' | C5' | C6' | 68.5° | 71.8° |
| C7' | C4' | C3' | C6' | 66.8° | 65.3° |
| C7' | C4' | C5' | O5' | 115.2° | 109.1° |
| C7' | C4' | C3' | C2' | 35.1° | 88.2° |
| C4' | C7' | C6' | C1' | 97.0° | 93.6° |
| C7' | C4' | C5' | H8 | 6.6° | 11.0° |
| C7' | C4' | C5' | H9 | 123.1° | 130.9° |
| C4' | C7' | C6' | H10 | 112.9° | 110.6° |
| C4' | C7' | H11 | H12 | 144.4° | 145.4° |
| C7' | C4' | C3' | H16 | 152.9° | 152.4° |
| C7' | C6' | C1' | H10 | 150.3° | 156.5° |
| C7' | C6' | C1' | C2' | 76.9° | 87.1° |
| C7' | C6' | C1' | N1 | 173.1° | 154.2° |
| C6' | C7' | H11 | H12 | 144.4° | 146.2° |
| C7' | C6' | C1' | H13 | 48.5° | 31.7° |
| C5' | C4' | C3' | C6' | 111.8° | 140.0° |
| C4' | C5' | O5' | H8 | 121.8° | 120.0° |
| C4' | C5' | O5' | H9 | 121.8° | 120.0° |
| C5' | C4' | C3' | C2' | 143.5° | 117.2° |
| C5' | C4' | C6' | C1' | 130.9° | 138.6° |
| C4' | C5' | O5' | P | 179.4° | 180.0° |
| C4' | C5' | H8 | H9 | 114.3° | 120.0° |
| C5' | C4' | C6' | H10 | 18.9° | 0.7° |
| C5' | C4' | C7' | H11 | 161.0° | 141.1° |
| C5' | C4' | C7' | H12 | 20.3° | 3.7° |
| C5' | C4' | C3' | H16 | 25.7° | 2.3° |
| C3' | C4' | C5' | O5' | 63.3° | 45.3° |
| C4' | C3' | C2' | H16 | 117.4° | 119.1° |
| C3' | C4' | C6' | C1' | 29.8° | 0.5° |
| C4' | C3' | C2' | C1' | 19.9° | 37.2° |
| C3' | C4' | C5' | H8 | 175.0° | 165.3° |
| C3' | C4' | C5' | H9 | 58.5° | 74.7° |
| C3' | C4' | C6' | H10 | 120.1° | 137.4° |
| C3' | C4' | C7' | H11 | 21.0° | 13.1° |
| C3' | C4' | C7' | H12 | 161.8° | 157.8° |
| C4' | C3' | C2' | H14 | 139.5° | 155.8° |
| C4' | C3' | C2' | H15 | 99.6° | 81.1° |
| C4' | C3' | O3' | H17 | 180.0° | 180.0° |
| C6' | C4' | C5' | O5' | 46.7° | 179.1° |
| C6' | C4' | C3' | C2' | 31.7° | 22.8° |
| C4' | C6' | C1' | H10 | 150.1° | 139.9° |
| C4' | C6' | C1' | C2' | 17.2° | 23.6° |
| C4' | C6' | C1' | N1 | 127.2° | 142.3° |
| C6' | C4' | C5' | H8 | 75.0° | 60.8° |
| C6' | C4' | C5' | H9 | 168.4° | 59.1° |
| C4' | C6' | C1' | H13 | 108.2° | 95.3° |
| C6' | C4' | C3' | H16 | 86.1° | 142.3° |
| C5' | O5' | P | OP1 | 31.6° | 55.0° |
| C5' | O5' | P | OP2 | 168.1° | 65.0° |
| O5' | C5' | H8 | H9 | 114.2° | 120.0° |
| C5' | O5' | P | OP3 | 82.7° | 175.0° |
| C3' | C2' | C1' | C6' | 1.8° | 37.5° |
| C3' | C2' | C1' | H14 | 119.5° | 118.7° |
| C3' | C2' | C1' | H15 | 119.6° | 118.1° |
| C3' | C2' | C1' | N1 | 111.3° | 156.2° |
| C3' | C2' | C1' | H13 | 127.1° | 81.3° |
| C3' | C2' | H14 | H15 | 121.4° | 123.0° |
| C2' | C3' | O3' | H17 | 65.0° | 65.4° |
| OP1 | P | O5' | OP2 | 136.4° | 120.0° |
| OP1 | P | O5' | OP3 | 51.1° | 120.0° |
| OP1 | P | OP2 | OP3 | 40.7° | 120.0° |
| OP1 | P | OP2 | H7 | 0.0° | 180.0° |
| OP1 | P | OP3 | H19 | 90.0° | 60.0° |
| C6' | C1' | C2' | N1 | 113.1° | 118.7° |
| C6' | C1' | C2' | H13 | 125.3° | 118.8° |
| C6' | C1' | N1 | H13 | 124.3° | 122.5° |
| C6' | C1' | N1 | C6 | 43.6° | 119.9° |
| C6' | C1' | N1 | C2 | 136.4° | 60.0° |
| C1' | C6' | C7' | H11 | 12.7° | 13.9° |
| C1' | C6' | C7' | H12 | 153.4° | 159.3° |
| C6' | C1' | C2' | H14 | 121.3° | 156.2° |
| C6' | C1' | C2' | H15 | 117.7° | 80.6° |
| C2' | C1' | N1 | H13 | 121.3° | 122.7° |
| C2' | C1' | N1 | C6 | 70.7° | 125.2° |
| C2' | C1' | N1 | C2 | 109.3° | 54.8° |
| C2' | C1' | C6' | H10 | 132.9° | 116.3° |
| C1' | C2' | H14 | H15 | 121.3° | 123.3° |
| C1' | C2' | C3' | H16 | 97.5° | 156.3° |
| O5' | P | OP2 | OP3 | 90.2° | 120.0° |
| O5' | P | OP2 | H7 | 130.9° | 59.9° |
| P | O5' | C5' | H8 | 57.7° | 60.0° |
| P | O5' | C5' | H9 | 58.8° | 60.0° |
| O5' | P | OP3 | H19 | 90.0° | 180.0° |
| C1' | N1 | C6 | C2 | 180.0° | 180.0° |
| C1' | N1 | C2 | O2 | 0.1° | 0.2° |
| C1' | N1 | C6 | C5 | 179.8° | 180.0° |
| C1' | N1 | C2 | N3 | 179.7° | 179.9° |
| C1' | N1 | C6 | H2 | 0.2° | 0.0° |
| N1 | C1' | C6' | H10 | 22.9° | 2.4° |
| N1 | C1' | C2' | H14 | 8.3° | 85.1° |
| N1 | C1' | C2' | H15 | 129.2° | 38.1° |
| OP2 | P | OP3 | H19 | 90.0° | 60.0° |
| C6 | N1 | C2 | O2 | 179.9° | 179.8° |
| N1 | C6 | C5 | H2 | 180.0° | 180.0° |
| C6 | N1 | C2 | N3 | 0.3° | 0.0° |
| N1 | C6 | C5 | C7 | 179.9° | 180.0° |
| N1 | C6 | C5 | C4 | 0.1° | 0.0° |
| C6 | N1 | C1' | H13 | 167.9° | 2.6° |
| N1 | C2 | O2 | N3 | 179.8° | 179.8° |
| C2 | N1 | C6 | C5 | 0.2° | 0.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.0° |
| N1 | C2 | N3 | H1 | 179.9° | 180.0° |
| C2 | N1 | C6 | H2 | 179.8° | 180.0° |
| C2 | N1 | C1' | H13 | 12.0° | 177.5° |
| O2 | C2 | N3 | C4 | 180.0° | 179.8° |
| O2 | C2 | N3 | H1 | 0.0° | 0.2° |
| C6 | C5 | C7 | C4 | 180.0° | 179.9° |
| C6 | C5 | C4 | N3 | 0.2° | 0.0° |
| C6 | C5 | C4 | O4 | 179.8° | 180.0° |
| C6 | C5 | C7 | H3 | 180.0° | 180.0° |
| C6 | C5 | C7 | H4 | 60.0° | 60.1° |
| C6 | C5 | C7 | H5 | 60.0° | 59.9° |
| C2 | N3 | C4 | C5 | 0.1° | 0.0° |
| C2 | N3 | C4 | H1 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 179.9° | 180.0° |
| C7 | C5 | C4 | N3 | 179.8° | 180.0° |
| C7 | C5 | C4 | O4 | 0.2° | 0.1° |
| C7 | C5 | C6 | H2 | 0.1° | 0.0° |
| C5 | C7 | H3 | H4 | 120.0° | 120.0° |
| C5 | C7 | H3 | H5 | 120.0° | 120.1° |
| C5 | C7 | H4 | H5 | 120.0° | 120.1° |
| C5 | C4 | N3 | O4 | 180.0° | 180.0° |
| C5 | C4 | N3 | H1 | 179.9° | 180.0° |
| C4 | C5 | C6 | H2 | 179.9° | 180.0° |
| C4 | C5 | C7 | H3 | 0.0° | 0.1° |
| C4 | C5 | C7 | H4 | 120.0° | 120.0° |
| C4 | C5 | C7 | H5 | 120.0° | 120.0° |
| O4 | C4 | N3 | H1 | 0.1° | 0.0° |
| H3 | C7 | H4 | H5 | 120.0° | 120.0° |
| H7 | OP2 | P | OP3 | 40.7° | 60.1° |
| H10 | C6' | C7' | H11 | 137.4° | 141.9° |
| H10 | C6' | C7' | H12 | 3.3° | 3.5° |
| H10 | C6' | C1' | H13 | 101.8° | 124.8° |
| H13 | C1' | C2' | H14 | 113.3° | 37.4° |
| H13 | C1' | C2' | H15 | 7.6° | 160.6° |
| H14 | C2' | C3' | H16 | 22.0° | 85.1° |
| H15 | C2' | C3' | H16 | 142.9° | 37.9° |
| H16 | C3' | O3' | H17 | 62.0° | 57.4° |
