0KX
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O4' | C4' | sing | 1.44Å | 1.45Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C4' | C5' | sing | 1.53Å | 1.43Å | |
| C4' | C3' | sing | 1.55Å | 1.47Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| C1' | N1 | sing | 1.47Å | 1.44Å | |
| C1' | C2' | sing | 1.54Å | 1.49Å | |
| O5' | PA | sing | 1.61Å | 1.59Å | |
| O1A | PA | doub | 1.48Å | 1.63Å | |
| O2 | C2 | doub | 1.22Å | 1.16Å | |
| N1 | C2 | sing | 1.35Å | 1.34Å | |
| N1 | C6 | sing | 1.36Å | 1.34Å | |
| C3' | C2' | sing | 1.54Å | 1.47Å | |
| C3' | O3' | sing | 1.43Å | 1.34Å | |
| C2 | N3 | sing | 1.33Å | 1.33Å | |
| C6 | C5 | doub | 1.35Å | 1.39Å | |
| O2B | PB | doub | 1.48Å | 1.46Å | |
| PA | O2A | sing | 1.61Å | 1.57Å | |
| PA | N3A | sing | 1.68Å | 1.69Å | |
| N3 | C4 | doub | 1.33Å | 1.35Å | |
| C5 | C4 | sing | 1.41Å | 1.39Å | |
| C4 | N4 | sing | 1.37Å | 1.38Å | |
| O2G | PG | doub | 1.48Å | 1.48Å | |
| PB | N3A | sing | 1.68Å | 1.68Å | |
| PB | O1B | sing | 1.61Å | 1.51Å | |
| PB | O3B | sing | 1.61Å | 1.58Å | |
| PG | O3B | sing | 1.61Å | 1.57Å | |
| PG | O3G | sing | 1.61Å | 1.45Å | |
| PG | O1G | sing | 1.61Å | 1.50Å | |
| O1G | H1 | sing | 0.97Å | 0.95Å | |
| O3G | H2 | sing | 0.97Å | 0.95Å | |
| O1B | H3 | sing | 0.97Å | 0.95Å | |
| O2A | H4 | sing | 0.97Å | 0.95Å | |
| N3A | H5 | sing | 1.01Å | 1.00Å | |
| C5' | H6 | sing | 1.09Å | 1.10Å | |
| C5' | H7 | sing | 1.09Å | 1.10Å | |
| C4' | H8 | sing | 1.09Å | 1.10Å | |
| C3' | H9 | sing | 1.09Å | 1.10Å | |
| O3' | H10 | sing | 0.97Å | 0.95Å | |
| C2' | H11 | sing | 1.09Å | 1.10Å | |
| C2' | H12 | sing | 1.09Å | 1.10Å | |
| C1' | H13 | sing | 1.09Å | 1.10Å | |
| C5 | H14 | sing | 1.08Å | 1.08Å | |
| C6 | H15 | sing | 1.08Å | 1.08Å | |
| N4 | H16 | sing | 0.97Å | 1.00Å | |
| N4 | H17 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C4' | O4' | C1' | 108.2° | 105.2° |
| O4' | C4' | C5' | 107.9° | 110.4° |
| O4' | C4' | C3' | 105.2° | 104.8° |
| O4' | C4' | H8 | 111.8° | 110.5° |
| O4' | C1' | N1 | 114.0° | 110.4° |
| O4' | C1' | C2' | 107.7° | 104.8° |
| O4' | C1' | H13 | 109.4° | 110.4° |
| C5' | C4' | C3' | 108.0° | 110.4° |
| C4' | C5' | O5' | 115.2° | 109.5° |
| C4' | C5' | H6 | 108.0° | 109.5° |
| C4' | C5' | H7 | 108.0° | 109.5° |
| C5' | C4' | H8 | 112.0° | 110.3° |
| C4' | C3' | C2' | 104.2° | 104.1° |
| C4' | C3' | O3' | 111.0° | 110.5° |
| C3' | C4' | H8 | 111.5° | 110.3° |
| C4' | C3' | H9 | 109.4° | 110.5° |
| C5' | O5' | PA | 122.3° | 123.0° |
| O5' | C5' | H6 | 108.0° | 109.5° |
| O5' | C5' | H7 | 108.1° | 109.5° |
| N1 | C1' | C2' | 108.3° | 110.4° |
| C1' | N1 | C2 | 120.9° | 119.8° |
| C1' | N1 | C6 | 118.8° | 119.9° |
| N1 | C1' | H13 | 109.0° | 110.3° |
| C1' | C2' | C3' | 104.2° | 104.0° |
| C1' | C2' | H11 | 110.8° | 110.5° |
| C1' | C2' | H12 | 110.8° | 110.6° |
| C2' | C1' | H13 | 108.4° | 110.5° |
| O5' | PA | O1A | 108.8° | 109.5° |
| O5' | PA | O2A | 113.3° | 109.5° |
| O5' | PA | N3A | 111.5° | 109.5° |
| O1A | PA | O2A | 104.8° | 109.5° |
| O1A | PA | N3A | 109.2° | 109.5° |
| O2 | C2 | N1 | 119.8° | 119.5° |
| O2 | C2 | N3 | 118.8° | 119.4° |
| C2 | N1 | C6 | 120.3° | 120.4° |
| N1 | C2 | N3 | 121.4° | 121.1° |
| N1 | C6 | C5 | 119.3° | 119.2° |
| N1 | C6 | H15 | 120.4° | 120.3° |
| C2' | C3' | O3' | 111.2° | 110.5° |
| C2' | C3' | H9 | 109.3° | 110.5° |
| C3' | C2' | H11 | 110.8° | 110.5° |
| C3' | C2' | H12 | 110.8° | 110.5° |
| O3' | C3' | H9 | 111.4° | 110.6° |
| C3' | O3' | H10 | 109.5° | 114.0° |
| C2 | N3 | C4 | 121.0° | 120.7° |
| C6 | C5 | C4 | 119.5° | 119.0° |
| C6 | C5 | H14 | 120.2° | 120.5° |
| C5 | C6 | H15 | 120.4° | 120.4° |
| O2B | PB | N3A | 113.0° | 109.5° |
| O2B | PB | O1B | 106.9° | 109.5° |
| O2B | PB | O3B | 111.5° | 109.4° |
| O2A | PA | N3A | 109.1° | 109.5° |
| PA | O2A | H4 | 109.5° | 114.0° |
| PA | N3A | PB | 116.4° | 111.0° |
| PA | N3A | H5 | 107.7° | 111.0° |
| N3 | C4 | C5 | 118.4° | 119.6° |
| N3 | C4 | N4 | 121.2° | 120.2° |
| C5 | C4 | N4 | 120.4° | 120.2° |
| C4 | C5 | H14 | 120.2° | 120.5° |
| C4 | N4 | H16 | 120.0° | 120.0° |
| C4 | N4 | H17 | 120.0° | 120.0° |
| O2G | PG | O3B | 112.9° | 109.5° |
| O2G | PG | O3G | 109.1° | 109.5° |
| O2G | PG | O1G | 107.9° | 109.4° |
| N3A | PB | O1B | 109.1° | 109.5° |
| N3A | PB | O3B | 109.1° | 109.5° |
| PB | N3A | H5 | 107.7° | 111.0° |
| O1B | PB | O3B | 107.0° | 109.5° |
| PB | O1B | H3 | 109.5° | 114.0° |
| PB | O3B | PG | 126.3° | 134.1° |
| O3B | PG | O3G | 108.5° | 109.5° |
| O3B | PG | O1G | 110.1° | 109.5° |
| O3G | PG | O1G | 108.3° | 109.5° |
| PG | O3G | H2 | 109.5° | 114.0° |
| PG | O1G | H1 | 109.5° | 114.0° |
| H6 | C5' | H7 | 109.4° | 109.5° |
| H11 | C2' | H12 | 109.5° | 110.5° |
| H16 | N4 | H17 | 120.0° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O4' | C4' | C5' | C3' | 113.3° | 115.4° |
| O4' | C4' | C5' | H8 | 123.5° | 122.4° |
| O4' | C4' | C3' | H8 | 121.4° | 119.0° |
| O4' | C4' | C5' | O5' | 54.7° | 69.6° |
| C4' | O4' | C1' | N1 | 121.8° | 159.4° |
| C4' | O4' | C1' | C2' | 1.6° | 40.5° |
| O4' | C4' | C3' | C2' | 31.8° | 24.0° |
| O4' | C4' | C3' | O3' | 151.7° | 142.7° |
| O4' | C4' | C5' | H6 | 66.1° | 50.4° |
| O4' | C4' | C5' | H7 | 175.6° | 170.4° |
| O4' | C4' | C3' | H9 | 85.1° | 94.6° |
| C4' | O4' | C1' | H13 | 115.9° | 78.5° |
| C1' | O4' | C4' | C5' | 136.0° | 159.3° |
| C1' | O4' | C4' | C3' | 20.8° | 40.5° |
| O4' | C1' | N1 | C2' | 119.9° | 115.4° |
| O4' | C1' | N1 | H13 | 122.5° | 122.2° |
| O4' | C1' | C2' | H13 | 118.2° | 118.9° |
| O4' | C1' | N1 | C2 | 143.8° | 53.6° |
| O4' | C1' | N1 | C6 | 35.6° | 126.7° |
| O4' | C1' | C2' | C3' | 18.1° | 24.0° |
| C1' | O4' | C4' | H8 | 100.4° | 78.3° |
| O4' | C1' | C2' | H11 | 101.0° | 94.6° |
| O4' | C1' | C2' | H12 | 137.2° | 142.7° |
| C5' | C4' | C3' | H8 | 123.6° | 122.2° |
| C4' | C5' | O5' | H6 | 120.8° | 120.0° |
| C4' | C5' | O5' | H7 | 120.8° | 120.0° |
| C4' | C5' | O5' | PA | 139.7° | 180.0° |
| C5' | C4' | C3' | C2' | 146.8° | 142.8° |
| C5' | C4' | C3' | O3' | 93.3° | 98.5° |
| C4' | C5' | H6 | H7 | 117.4° | 120.0° |
| C5' | C4' | C3' | H9 | 30.0° | 24.2° |
| C3' | C4' | C5' | O5' | 58.5° | 175.0° |
| C4' | C3' | C2' | C1' | 30.4° | 0.0° |
| C4' | C3' | C2' | O3' | 119.7° | 118.7° |
| C4' | C3' | C2' | H9 | 116.8° | 118.6° |
| C4' | C3' | O3' | H9 | 122.1° | 122.6° |
| C3' | C4' | C5' | H6 | 179.4° | 65.0° |
| C3' | C4' | C5' | H7 | 62.3° | 55.0° |
| C4' | C3' | O3' | H10 | 180.0° | 180.0° |
| C4' | C3' | C2' | H11 | 88.8° | 118.6° |
| C4' | C3' | C2' | H12 | 149.5° | 118.8° |
| C5' | O5' | PA | O1A | 40.7° | 45.0° |
| C5' | O5' | PA | O2A | 156.8° | 165.0° |
| C5' | O5' | PA | N3A | 79.7° | 75.0° |
| O5' | C5' | H6 | H7 | 117.4° | 120.0° |
| O5' | C5' | C4' | H8 | 178.2° | 52.8° |
| N1 | C1' | C2' | H13 | 118.0° | 122.2° |
| C1' | N1 | C2 | O2 | 0.0° | 0.1° |
| C1' | N1 | C2 | C6 | 179.3° | 179.7° |
| N1 | C1' | C2' | C3' | 105.6° | 142.9° |
| C1' | N1 | C2 | N3 | 179.3° | 180.0° |
| C1' | N1 | C6 | C5 | 179.5° | 179.7° |
| N1 | C1' | C2' | H11 | 135.2° | 24.2° |
| N1 | C1' | C2' | H12 | 13.5° | 98.5° |
| C1' | N1 | C6 | H15 | 0.5° | 0.0° |
| C2' | C1' | N1 | C2 | 96.4° | 61.8° |
| C2' | C1' | N1 | C6 | 84.3° | 117.9° |
| C1' | C2' | C3' | H11 | 119.1° | 118.6° |
| C1' | C2' | C3' | H12 | 119.2° | 118.8° |
| C1' | C2' | C3' | O3' | 150.1° | 118.7° |
| C1' | C2' | C3' | H9 | 86.5° | 118.6° |
| C1' | C2' | H11 | H12 | 122.5° | 122.8° |
| O5' | PA | O1A | O2A | 121.4° | 120.0° |
| O5' | PA | O1A | N3A | 121.9° | 120.0° |
| O5' | PA | O2A | N3A | 124.8° | 120.0° |
| O5' | PA | N3A | PB | 78.0° | 180.0° |
| O5' | PA | O2A | H4 | 118.4° | 60.0° |
| O5' | PA | N3A | H5 | 43.0° | 56.0° |
| PA | O5' | C5' | H6 | 99.4° | 60.0° |
| PA | O5' | C5' | H7 | 18.9° | 60.0° |
| O1A | PA | O2A | N3A | 116.8° | 120.0° |
| O1A | PA | N3A | PB | 42.2° | 60.0° |
| O1A | PA | O2A | H4 | 0.0° | 180.0° |
| O1A | PA | N3A | H5 | 163.2° | 64.0° |
| O2 | C2 | N1 | N3 | 179.3° | 179.9° |
| O2 | C2 | N1 | C6 | 179.3° | 179.8° |
| O2 | C2 | N3 | C4 | 179.5° | 179.9° |
| C2 | N1 | C6 | C5 | 0.1° | 0.6° |
| N1 | C2 | N3 | C4 | 0.2° | 0.0° |
| C2 | N1 | C1' | H13 | 21.3° | 175.8° |
| C2 | N1 | C6 | H15 | 179.8° | 179.7° |
| C6 | N1 | C2 | N3 | 0.0° | 0.3° |
| N1 | C6 | C5 | H15 | 180.0° | 179.7° |
| N1 | C6 | C5 | C4 | 0.1° | 0.6° |
| C6 | N1 | C1' | H13 | 158.1° | 4.5° |
| N1 | C6 | C5 | H14 | 179.9° | 179.7° |
| C2' | C3' | O3' | H9 | 122.2° | 122.7° |
| C2' | C3' | C4' | H8 | 89.6° | 95.0° |
| C2' | C3' | O3' | H10 | 64.3° | 65.3° |
| C3' | C2' | H11 | H12 | 122.5° | 122.6° |
| C3' | C2' | C1' | H13 | 136.3° | 94.9° |
| O3' | C3' | C4' | H8 | 30.3° | 23.7° |
| O3' | C3' | C2' | H11 | 31.0° | 122.7° |
| O3' | C3' | C2' | H12 | 90.7° | 0.1° |
| C2 | N3 | C4 | C5 | 0.2° | 0.0° |
| C2 | N3 | C4 | N4 | 179.6° | 180.0° |
| C6 | C5 | C4 | N3 | 0.1° | 0.3° |
| C6 | C5 | C4 | H14 | 180.0° | 179.7° |
| C6 | C5 | C4 | N4 | 179.7° | 179.7° |
| O2B | PB | N3A | PA | 1.7° | 60.0° |
| O2B | PB | N3A | O1B | 118.8° | 120.0° |
| O2B | PB | N3A | O3B | 124.6° | 120.0° |
| O2B | PB | O1B | O3B | 119.5° | 120.0° |
| O2B | PB | O3B | PG | 63.9° | 60.0° |
| O2B | PB | O1B | H3 | 0.0° | 180.0° |
| O2B | PB | N3A | H5 | 119.3° | 176.0° |
| O2A | PA | N3A | PB | 156.2° | 60.0° |
| O2A | PA | N3A | H5 | 82.9° | 176.0° |
| PA | N3A | PB | H5 | 121.0° | 124.0° |
| PA | N3A | PB | O1B | 120.5° | 60.0° |
| PA | N3A | PB | O3B | 122.9° | 180.0° |
| N3A | PA | O2A | H4 | 116.8° | 60.0° |
| N3 | C4 | C5 | N4 | 179.8° | 180.0° |
| N3 | C4 | C5 | H14 | 179.9° | 180.0° |
| N3 | C4 | N4 | H16 | 0.0° | 0.1° |
| N3 | C4 | N4 | H17 | 180.0° | 180.0° |
| C4 | C5 | C6 | H15 | 179.9° | 179.7° |
| C5 | C4 | N4 | H16 | 179.9° | 179.9° |
| C5 | C4 | N4 | H17 | 0.2° | 0.0° |
| N4 | C4 | C5 | H14 | 0.3° | 0.0° |
| C4 | N4 | H16 | H17 | 180.0° | 179.9° |
| O2G | PG | O3B | PB | 10.8° | 40.0° |
| O2G | PG | O3B | O3G | 121.0° | 120.0° |
| O2G | PG | O3B | O1G | 120.6° | 119.9° |
| O2G | PG | O3G | O1G | 117.2° | 120.0° |
| O2G | PG | O1G | H1 | 0.0° | 179.9° |
| O2G | PG | O3G | H2 | 0.0° | 60.0° |
| N3A | PB | O1B | O3B | 118.0° | 120.1° |
| N3A | PB | O3B | PG | 61.6° | 180.0° |
| N3A | PB | O1B | H3 | 122.5° | 60.0° |
| O1B | PB | O3B | PG | 179.5° | 60.0° |
| O1B | PB | N3A | H5 | 0.5° | 64.0° |
| PB | O3B | PG | O3G | 131.8° | 160.0° |
| PB | O3B | PG | O1G | 109.9° | 80.0° |
| O3B | PB | O1B | H3 | 119.5° | 60.0° |
| O3B | PB | N3A | H5 | 116.1° | 56.0° |
| O3B | PG | O3G | O1G | 119.5° | 120.0° |
| O3B | PG | O1G | H1 | 123.6° | 60.1° |
| O3B | PG | O3G | H2 | 123.3° | 180.0° |
| O3G | PG | O1G | H1 | 118.0° | 59.9° |
| O1G | PG | O3G | H2 | 117.2° | 60.0° |
| H6 | C5' | C4' | H8 | 57.4° | 172.8° |
| H7 | C5' | C4' | H8 | 60.9° | 67.2° |
| H8 | C4' | C3' | H9 | 153.6° | 146.4° |
| H9 | C3' | O3' | H10 | 57.9° | 57.3° |
| H9 | C3' | C2' | H11 | 154.4° | 0.0° |
| H9 | C3' | C2' | H12 | 32.7° | 122.6° |
| H11 | C2' | C1' | H13 | 17.2° | 146.5° |
| H12 | C2' | C1' | H13 | 104.5° | 23.8° |
| H14 | C5 | C6 | H15 | 0.1° | 0.0° |
